genome.fa.s14644.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014644.1 Kokia drynarioides strain JFW-HI SEQ_129683, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126177

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10844--10889	24	2.0	23	86	4	65	65	0	2	32	1.05
12964--12990	10	2.7	10	100	0	54	40	0	0	59	0.98
22535--22576	14	3.3	13	84	12	52	61	0	0	38	0.96
26593--26618	5	5.2	5	100	0	52	38	61	0	0	0.96
34266--34389	63	2.0	63	87	3	178	12	16	28	41	1.86
34407--34569	66	2.5	66	86	2	211	11	21	20	47	1.81
34538--34995	54	8.7	53	84	6	448	13	24	20	41	1.88
34620--34711	27	3.4	27	65	11	71	14	26	22	36	1.92
34647--34734	27	3.3	27	65	6	70	14	27	18	39	1.90
34778--34920	27	5.3	27	65	9	94	12	23	19	44	1.85
34765--34835	21	3.2	21	67	18	54	11	25	18	45	1.82
34686--34996	99	3.1	98	76	9	334	13	24	20	41	1.88
34595--34996	207	1.9	207	88	0	597	13	24	20	41	1.88
34520--35019	162	3.1	157	81	6	499	12	24	21	41	1.88
34524--35021	261	1.9	261	83	1	640	12	24	21	41	1.87
43719--43745	3	9.0	3	100	0	54	33	0	0	66	0.92
53562--53586	2	12.5	2	100	0	50	48	0	0	52	1.00
58437--58480	19	2.4	19	85	14	65	34	0	0	65	0.93
71902--71962	31	2.0	31	90	0	95	40	13	6	39	1.70
72801--72893	31	3.1	30	76	17	104	56	13	1	27	1.44
74911--74970	22	2.8	22	85	9	72	73	1	10	15	1.17
74936--74965	15	1.9	16	93	6	53	70	0	13	16	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75775--75817	19	2.3	19	84	8	52	58	4	0	37	1.19
77137--77188	21	2.5	21	80	0	59	32	26	13	26	1.94
77947--78301	194	1.8	197	83	1	482	27	24	17	30	1.97
80869--80903	18	1.9	18	94	0	61	40	22	8	28	1.84
84353--84421	29	2.4	29	97	0	129	42	4	13	40	1.63
94142--94211	27	2.5	28	95	2	124	52	4	0	42	1.20
101889--101937	23	2.3	20	83	13	62	36	2	2	59	1.21
101900--101937	20	1.9	20	89	10	60	34	0	2	63	1.09
108598--108640	22	1.9	23	86	13	63	25	4	4	65	1.32
108598--108648	23	2.3	22	83	10	59	25	3	5	64	1.33
108705--108748	17	2.6	17	85	7	54	22	4	4	68	1.27
109008--109064	27	2.1	28	93	3	98	43	3	7	45	1.48
113591--113661	37	1.9	37	97	0	133	39	11	18	30	1.86
118292--118351	29	2.1	27	81	6	66	20	5	6	68	1.32
119289--119329	22	1.9	22	95	5	75	53	14	4	26	1.61
123607--123646	2	20.0	2	100	0	80	50	0	0	50	1.00

Tables:   1

The End!