Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014645.1 Kokia drynarioides strain JFW-HI SEQ_129684, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4934
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:3654 original size:20 final size:20

Alignment explanation


    Indices: 3631--3670  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       3621 TTCACTGCAA

                                
       3631 TAATGAGCTTAGTAAAAGAG
          1 TAATGAGCTTAGTAAAAGAG

                                
       3651 TAATGAGCTTAGTAAAAGAG
          1 TAATGAGCTTAGTAAAAGAG

       3671 ACAATCAGAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25


Consensus pattern (20 bp):   
TAATGAGCTTAGTAAAAGAG
Done.