Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014647.1 Kokia drynarioides strain JFW-HI SEQ_129686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3667
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36


Found at i:875 original size:14 final size:14

Alignment explanation


    Indices: 830--878  Score: 53
    Period size: 14  Copynumber: 3.4  Consensus size: 14

        820 ATTTAAAGAA

                  *        
        830 TTTTTTCTATTAAAT
          1 TTTTTTATATT-AAT

                          
        845 TTTTTTATATTAAT
          1 TTTTTTATATTAAT

                  * *   * 
        859 TTTTTTTTTTTACT
          1 TTTTTTATATTAAT

                  
        873 TTTTTT
          1 TTTTTT

        879 GGTGATAAAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  14   20  0.67
  15   10  0.33

ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78


Consensus pattern (14 bp):   
TTTTTTATATTAAT
Done.