genome.fa.s14649.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014649.1 Kokia drynarioides strain JFW-HI SEQ_129688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113840

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9723--9748	6	4.3	6	100	0	52	50	15	34	0	1.45
13851--13875	2	12.5	2	100	0	50	48	0	0	52	1.00
14473--14520	21	2.4	21	80	10	57	16	45	14	22	1.84
15375--15413	20	2.0	20	85	10	53	23	10	0	66	1.22
15495--15545	24	2.2	24	86	10	70	19	9	3	66	1.36
15649--15705	13	4.3	12	77	16	51	14	1	7	77	1.06
19905--19953	24	2.0	24	92	0	80	38	22	8	30	1.83
28049--28104	24	2.3	24	96	0	103	35	26	7	30	1.83
43393--43443	24	2.1	24	88	0	75	56	7	7	27	1.55
45373--45447	24	3.1	24	94	0	123	54	9	10	25	1.64
51159--51214	24	2.3	24	87	0	85	37	25	5	32	1.78
58822--59178	59	6.1	56	76	12	206	37	3	22	36	1.72
58792--59178	30	13.1	30	74	14	281	36	4	23	35	1.74
58943--59178	59	4.0	60	80	7	232	38	2	21	36	1.69
60930--60996	34	2.0	34	82	5	82	50	7	5	35	1.55
61770--61869	37	2.7	37	92	3	166	24	24	21	31	1.98
62000--62456	209	2.2	207	88	1	664	21	21	20	36	1.95
70729--70836	17	6.4	17	74	8	94	39	1	6	51	1.38
71590--71630	18	2.2	19	86	4	57	51	2	2	43	1.28
72590--72831	30	8.2	30	75	13	182	32	25	2	39	1.69
72578--72856	30	9.4	30	71	13	166	33	25	2	38	1.71
72573--72832	59	4.4	59	81	12	246	33	25	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84502--84779	49	5.7	48	72	12	188	39	19	25	16	1.91
84514--84828	98	3.2	98	89	2	463	38	19	25	17	1.93
84566--84808	49	4.9	50	75	10	257	36	20	26	16	1.94
85089--85174	39	2.2	39	87	0	127	19	31	20	27	1.97
86494--86541	22	2.2	22	81	7	53	52	2	2	43	1.24
103729--103797	9	7.0	9	77	18	66	53	1	1	43	1.18
104807--104930	29	4.2	29	76	11	110	34	32	5	27	1.80
104807--104941	59	2.3	59	84	2	182	34	31	5	29	1.79
108924--110841	964	2.0	954	100	0	3746	33	20	22	22	1.97

Tables:   1

The End!