Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001465.1 Kokia drynarioides strain JFW-HI SEQ_112989, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7068
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36


Found at i:4455 original size:57 final size:57

Alignment explanation


    Indices: 4387--4500  Score: 228
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       4377 TAGTCTAAGA

                                                                     
       4387 ATGTTTTATTGGTTAATTGGAATGTTGATGAACTGATAGTAATGTATGCCTTTGTGT
          1 ATGTTTTATTGGTTAATTGGAATGTTGATGAACTGATAGTAATGTATGCCTTTGTGT

                                                                     
       4444 ATGTTTTATTGGTTAATTGGAATGTTGATGAACTGATAGTAATGTATGCCTTTGTGT
          1 ATGTTTTATTGGTTAATTGGAATGTTGATGAACTGATAGTAATGTATGCCTTTGTGT

       4501 TAGGGTGTGT


Statistics
Matches: 57,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  57   57  1.00

ACGTcount: A:0.25, C:0.05, G:0.25, T:0.46


Consensus pattern (57 bp):   
ATGTTTTATTGGTTAATTGGAATGTTGATGAACTGATAGTAATGTATGCCTTTGTGT

Found at i:6338 original size:12 final size:12

Alignment explanation


    Indices: 6321--6348  Score: 56
    Period size: 12  Copynumber: 2.3  Consensus size: 12

       6311 TTACAACTGG

                        
       6321 TATTTATTTTGA
          1 TATTTATTTTGA

                        
       6333 TATTTATTTTGA
          1 TATTTATTTTGA

                
       6345 TATT
          1 TATT

       6349 CAAAATATGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   16  1.00

ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68


Consensus pattern (12 bp):   
TATTTATTTTGA
Done.