Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014650.1 Kokia drynarioides strain JFW-HI SEQ_129689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58975
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Found at i:2438 original size:36 final size:36
Alignment explanation
Indices: 2391--2465 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
2381 CTCTTGACAC
2391 AAAACATATACTTACCTCAAACAAATATTAATAAGG
1 AAAACATATACTTACCTCAAACAAATATTAATAAGG
2427 AAAACATATACTTACCTCAAACAAATATTAATAAGG
1 AAAACATATACTTACCTCAAACAAATATTAATAAGG
2463 AAA
1 AAA
2466 CACTCATAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.55, C:0.16, G:0.05, T:0.24
Consensus pattern (36 bp):
AAAACATATACTTACCTCAAACAAATATTAATAAGG
Found at i:5392 original size:34 final size:33
Alignment explanation
Indices: 5354--5455 Score: 88
Period size: 34 Copynumber: 3.2 Consensus size: 33
5344 ATTAATACGT
5354 TTTATTATTACCT-TTACTTATTATACTTTTATTC
1 TTTATTATT-CCTATTACTTATTATA-TTTTATTC
**
5388 TTTATTATTTTTATTACTTATTATATTTTA---
1 TTTATTATTCCTATTACTTATTATATTTTATTC
* * * *
5418 TATATT-TTTCTAATACTGATTATAATTTTATTC
1 TTTATTATTCCTATTACTTATTAT-ATTTTATTC
5451 TTTAT
1 TTTAT
5456 ATAAGTATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
29 14 0.25
30 11 0.20
33 10 0.18
34 21 0.38
ACGTcount: A:0.26, C:0.09, G:0.01, T:0.64
Consensus pattern (33 bp):
TTTATTATTCCTATTACTTATTATATTTTATTC
Found at i:5401 original size:16 final size:17
Alignment explanation
Indices: 5367--5418 Score: 72
Period size: 16 Copynumber: 3.1 Consensus size: 17
5357 ATTATTACCT
5367 TTACTTATTATACTTTTA
1 TTACTTATTATA-TTTTA
5385 TT-CTTTATTAT-TTTTA
1 TTAC-TTATTATATTTTA
5401 TTACTTATTATATTTTA
1 TTACTTATTATATTTTA
5418 T
1 T
5419 ATATTTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
16 14 0.45
17 8 0.26
18 9 0.29
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (17 bp):
TTACTTATTATATTTTA
Found at i:5417 original size:26 final size:29
Alignment explanation
Indices: 5388--5449 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
5378 ACTTTTATTC
* *
5388 TTTATTA-TTTT-TATTACTTATTAT-AT
1 TTTATTATTTTTCTAATACTGATTATAAT
5414 TTTATATATTTTTCTAATACTGATTATAAT
1 TTTAT-TATTTTTCTAATACTGATTATAAT
5444 TTTATT
1 TTTATT
5450 CTTTATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 4 0.13
29 12 0.40
30 7 0.23
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.65
Consensus pattern (29 bp):
TTTATTATTTTTCTAATACTGATTATAAT
Found at i:5466 original size:2 final size:2
Alignment explanation
Indices: 5461--5485 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
5451 TTTATATAAG
5461 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
5486 TTGCCATAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7108 original size:35 final size:36
Alignment explanation
Indices: 7062--7151 Score: 164
Period size: 36 Copynumber: 2.5 Consensus size: 36
7052 TGGTATCAGA
7062 CATGACCTTTGGGTCAACAGGGAGT-AAATGAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
*
7097 CATGACCTTTGGGTCAATAGGGAGTAAAATGAGCAT
1 CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
7133 CATGACCTTTGGGTCAACA
1 CATGACCTTTGGGTCAACA
7152 AGGAATAAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
35 24 0.46
36 28 0.54
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (36 bp):
CATGACCTTTGGGTCAACAGGGAGTAAAATGAGCAT
Found at i:7945 original size:21 final size:21
Alignment explanation
Indices: 7906--7955 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
7896 TTTTTAGTAC
* * *
7906 TGGTAGAAGCATGATTTGTTT
1 TGGTAGAAGCATCACTTGTAT
*
7927 TGGTAGAAGCTTCACTTGTAT
1 TGGTAGAAGCATCACTTGTAT
*
7948 CGGTAGAA
1 TGGTAGAA
7956 CTATCATAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.10, G:0.28, T:0.36
Consensus pattern (21 bp):
TGGTAGAAGCATCACTTGTAT
Found at i:10087 original size:16 final size:18
Alignment explanation
Indices: 10056--10090 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
10046 TATTACATCG
10056 ATTTATCAACTATAAAAC
1 ATTTATCAACTATAAAAC
10074 ATTTAT-AA-TATAAAAC
1 ATTTATCAACTATAAAAC
10090 A
1 A
10091 AACCTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 2 0.12
18 6 0.35
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.34
Consensus pattern (18 bp):
ATTTATCAACTATAAAAC
Found at i:11781 original size:72 final size:72
Alignment explanation
Indices: 11703--11923 Score: 239
Period size: 72 Copynumber: 3.0 Consensus size: 72
11693 CACCCAGTGT
* * * *
11703 CTAGCGGGTAAACCGTGATAAGTGAGTCCATCTCTAGTTGGATTAACCAACGAAAT-TCGTCAAT
1 CTAGCGGATAAACCGCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCT-GTCAAT
11767 TCATGTGC
65 TCATGTGC
*
11775 CTAGCGGATAAACCGCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAATGAAATCTGTCAATT
1 CTAGCGGATAAACCGCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCTGTCAATT
11840 CATG-GAAC
66 CATGTG--C
**** * *
11848 CTAGTGCCTGGTGGATAATTTACGATAAGTGAGCCTAGCTCTAGTTGGATTAACCAACGAAATCC
1 CTA--G-C----GGATAAACCGCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCT
11913 GTCAATTCATG
59 GTCAATTCATG
11924 ACACCCAGTG
Statistics
Matches: 127, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
71 1 0.01
72 62 0.49
73 5 0.04
75 1 0.01
76 1 0.01
80 57 0.45
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (72 bp):
CTAGCGGATAAACCGCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCTGTCAATT
CATGTGC
Found at i:11889 original size:80 final size:80
Alignment explanation
Indices: 11790--11945 Score: 251
Period size: 80 Copynumber: 1.9 Consensus size: 80
11780 GGATAAACCG
* * *
11790 CGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAATGAAATCTGTCAATTCATGGA-ACCTAGTG
1 CGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCCGTCAATTCAT-GACACCCAGTG
*
11854 CCTGGTGGATAATTTA
65 CCTAGTGGATAATTTA
*
11870 CGATAAGTGAGCCTAGCTCTAGTTGGATTAACCAACGAAATCCGTCAATTCATGACACCCAGTGC
1 CGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCCGTCAATTCATGACACCCAGTGC
11935 CTAGTGGATAA
66 CTAGTGGATAA
11946 ACCGTAATAA
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
79 2 0.03
80 68 0.97
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (80 bp):
CGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCCGTCAATTCATGACACCCAGTGC
CTAGTGGATAATTTA
Found at i:11956 original size:80 final size:78
Alignment explanation
Indices: 11771--11964 Score: 248
Period size: 80 Copynumber: 2.4 Consensus size: 78
11761 GTCAATTCAT
* * *
11771 GTGCCTAGCGGATAAACCGCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAATGAAATCTGTC
1 GTGCCTAGTGGATAAA-C-CGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCCGTC
*
11836 AATTCATGGAACCTA
64 AATTCATGGAACCCA
* *
11851 GTGCCTGGTGGATAATTTA-CGATAAGTGAGCCTAGCTCTAGTTGGATTAACCAACGAAATCCGT
1 GTGCCTAGTGGATAA---ACCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCCGT
11915 CAATTCAT-GACACCCA
63 CAATTCATGGA-ACCCA
11931 GTGCCTAGTGGATAAACCGTAATAAGTGAGCCCA
1 GTGCCTAGTGGATAAACCG--ATAAGTGAGCCCA
11965 TGATAACGTT
Statistics
Matches: 99, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 2 0.02
80 93 0.94
83 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (78 bp):
GTGCCTAGTGGATAAACCGATAAGTGAGCCCAGCTCTAGTTGGATTAACCAACGAAATCCGTCAA
TTCATGGAACCCA
Found at i:15211 original size:7 final size:6
Alignment explanation
Indices: 15194--15240 Score: 67
Period size: 6 Copynumber: 7.7 Consensus size: 6
15184 AGGCAACCCA
* *
15194 ATTTTT ATTTTT ATTTTT ATTTTTT ATTTTT ACTTTT ATCTTT ATTT
1 ATTTTT ATTTTT ATTTTT A-TTTTT ATTTTT ATTTTT ATTTTT ATTT
15241 CCATTTTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
6 30 0.83
7 6 0.17
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:15219 original size:19 final size:19
Alignment explanation
Indices: 15195--15232 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
15185 GGCAACCCAA
*
15195 TTTTTATTTTTATTTTTAT
1 TTTTTATTTTTACTTTTAT
15214 TTTTTATTTTTACTTTTAT
1 TTTTTATTTTTACTTTTAT
15233 CTTTATTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTATTTTTACTTTTAT
Found at i:16876 original size:14 final size:14
Alignment explanation
Indices: 16839--16868 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
16829 TTATATTTAA
*
16839 TTTATATTTATCTT
1 TTTAGATTTATCTT
16853 TTTAGATTTATCTT
1 TTTAGATTTATCTT
16867 TT
1 TT
16869 AGAGTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (14 bp):
TTTAGATTTATCTT
Found at i:21365 original size:21 final size:22
Alignment explanation
Indices: 21329--21371 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
21319 CAACAAATGA
*
21329 TTTTAAAATTATTAAAATTATT
1 TTTTAAAAATATTAAAATTATT
21351 TTTTAAAAATA-TAAAATTATT
1 TTTTAAAAATATTAAAATTATT
21372 AAAATTATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTAAAAATATTAAAATTATT
Found at i:21368 original size:30 final size:31
Alignment explanation
Indices: 21332--21405 Score: 123
Period size: 30 Copynumber: 2.4 Consensus size: 31
21322 CAAATGATTT
21332 TAAAATTATTAAAATTATTTTTTAAAAAT-A
1 TAAAATTATTAAAATTATTTTTTAAAAATAA
**
21362 TAAAATTATTAAAATTATTTTTTTGAAATAA
1 TAAAATTATTAAAATTATTTTTTAAAAATAA
21393 TAAAATTATTAAA
1 TAAAATTATTAAA
21406 TATTTCCACT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 27 0.66
31 14 0.34
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (31 bp):
TAAAATTATTAAAATTATTTTTTAAAAATAA
Found at i:22497 original size:20 final size:22
Alignment explanation
Indices: 22455--22506 Score: 90
Period size: 20 Copynumber: 2.5 Consensus size: 22
22445 AAAATTATTC
22455 AATAATTTTATTATTTCAAAAA
1 AATAATTTTATTATTTCAAAAA
22477 AATAATTTTA-TATTT-AAAAA
1 AATAATTTTATTATTTCAAAAA
22497 AATAATTTTA
1 AATAATTTTA
22507 AAATCATTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 15 0.50
21 5 0.17
22 10 0.33
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
AATAATTTTATTATTTCAAAAA
Found at i:29542 original size:7 final size:7
Alignment explanation
Indices: 29532--29563 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
29522 ATGAAAAATG
29532 AATGTGA
1 AATGTGA
29539 AATGTGA
1 AATGTGA
29546 AATGTGA
1 AATGTGA
29553 AATGTGA
1 AATGTGA
29560 AATG
1 AATG
29564 AGATATGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
AATGTGA
Found at i:31347 original size:52 final size:52
Alignment explanation
Indices: 31269--31828 Score: 640
Period size: 52 Copynumber: 10.6 Consensus size: 52
31259 GTAAATGAAA
* * *
31269 AAGGTTCGATGACTTTGTGTCATCGTGAGTATATAAATCCTTTACGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* * *
31321 AAGGTCCGATGACTTTGTGTCATCGTGAGTATATAAATCCTTTATGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* * *
31373 GAGGTCCGATGACAATGTGTCATCGTGAGTATATGAATCCTTTATGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* * *
31425 GAGGTCCGATGACTATGTGTCATCATGAGTATATGAATTCTTTACGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* *
31477 GAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATTCTTTACGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* * * *
31529 GAGGTCCAATGACTATGTGTCATCTTGAGTATATGAATTCTTTACGGATTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* * * * * **
31581 TAGGTCCGATGATTATGTGTCATCGTGAGTGTATGATTCCTTTAAGGAACA-
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* *
31632 AGAGGTCCGATGACTATGTGTCATCTTGAGTATATGAATTCTTTACGGATTAT
1 A-AGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* * * * * **
31685 TAGGTCTGATGACTATGTGTCATCGTGAGTGTATGATTCCTTTAAGGAACA-
1 AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
* ** * *
31736 AGAGGTCTGATGACTATGTGTCATATTGAGTATTAAATGAAATGAATTCCATTGCGGATTA-
1 A-AGGTCCGATGACTATGTGTCATCGTGAG---T--AT---ATGAA-TCCTTTACGGATTAT
*
31797 AAGGTCCGATGACTCTGTGTCATCGTGAGTAT
1 AAGGTCCGATGACTATGTGTCATCGTGAGTAT
31829 TAAACATGCA
Statistics
Matches: 441, Mismatches: 55, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
52 398 0.90
55 3 0.01
57 2 0.00
60 28 0.06
61 10 0.02
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (52 bp):
AAGGTCCGATGACTATGTGTCATCGTGAGTATATGAATCCTTTACGGATTAT
Found at i:33928 original size:27 final size:27
Alignment explanation
Indices: 33898--33961 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
33888 CTGGATCCGA
* * *
33898 ACCCGACCCGCTGACTTTGACCCGTTG
1 ACCCAACCCGCTCACTCTGACCCGTTG
** *
33925 ACCCAACCCATTCACTCTGACTCGTTG
1 ACCCAACCCGCTCACTCTGACCCGTTG
33952 ACCCAACCCG
1 ACCCAACCCG
33962 TTGATTGTTG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.20, C:0.44, G:0.16, T:0.20
Consensus pattern (27 bp):
ACCCAACCCGCTCACTCTGACCCGTTG
Found at i:38029 original size:26 final size:28
Alignment explanation
Indices: 38000--38056 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 28
37990 CGTGCATTGG
* *
38000 AATTTAGTTTAGCTTTA-ACT-TAGATT
1 AATTTAGTTTAGATTAATACTCTAGATT
38026 AATTTAGTTTAGATTAATACTCTAGATT
1 AATTTAGTTTAGATTAATACTCTAGATT
38054 AAT
1 AAT
38057 ATCCTTCACA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 15 0.56
27 3 0.11
28 9 0.33
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.47
Consensus pattern (28 bp):
AATTTAGTTTAGATTAATACTCTAGATT
Found at i:39673 original size:215 final size:215
Alignment explanation
Indices: 39194--39748 Score: 711
Period size: 215 Copynumber: 2.6 Consensus size: 215
39184 AGATACTACA
* *
39194 TCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCGCATCGTTCGGTCTAAATAGTTTG
1 TCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCGCATCATTAGGTCTAAATAGTTTG
* ** * * *
39259 TCATT-TTGTGAAAAAGTTTTGGTGTTTAAATCAAAAACTTATTTACGTGGGAATTGTTTCTCTC
66 TCATTATT-T-AAAAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTC
***
39323 TTGGTTCTTGGACGAACTTCCAATCTTATCAAACTTTTACGAGTTCTTTTATAACTTGGGTTCAT
129 TTGGTTCTTGGACGAACTTCCAATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCAATTCAT
* * *
39388 TAAATTGTTCAAGACAATCCCT
194 TAAAGTGTTAAAGACAATCCAT
* * * * * *
39410 TCCTTCGATCAATTTTCCGAATATTCCATGCTCTTGAAATCTCATCATTAGGTCTAAATAGTTTC
1 TCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCGCATCATTAGGTCTAAATAGTTTG
* *
39475 TCATTATTTAAACAAGTTTTGGTCTTTGGGTTAAAATCTTATTTACGTGAGAATTATTTCTCTCT
66 TCATTATTTAAA-AAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCT
** * * *
39540 TGGTTCTTGGACGAACTT-TGATCTTGTCAAAGTTTTACGAGTTCTTTTATAACTTCAATTCCTT
130 TGGTTCTTGGACGAACTTCCAATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCAATTCATT
*
39604 AAAGTGTTAAAGACGATCCAT
195 AAAGTGTTAAAGACAATCCAT
* * *
39625 TCCTTCGATCAATTTTTTGAATATTCCATTCCCGTGAAATCGCATCATTTGGTCTAAATAGATTG
1 TCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCGCATCATTAGGTCTAAATAGTTTG
* * * ** *
39690 TCA-TATTTTAAAAATGTTTTGGCCTTTGGATTAAAGACTCATTTGTGTGAGAAATATTT
66 TCATTA-TTTAAAAA-GTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTT
39749 TAAAAATGTT
Statistics
Matches: 290, Mismatches: 45, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
214 4 0.01
215 159 0.55
216 125 0.43
217 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.42
Consensus pattern (215 bp):
TCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCGCATCATTAGGTCTAAATAGTTTG
TCATTATTTAAAAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTT
GGTTCTTGGACGAACTTCCAATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCAATTCATTA
AAGTGTTAAAGACAATCCAT
Found at i:40289 original size:215 final size:216
Alignment explanation
Indices: 39787--50285 Score: 11653
Period size: 216 Copynumber: 48.9 Consensus size: 216
39777 AATTCCTTCG
* * * * *
39787 TTAAAGT-TTCAAGATGATCCATTCCTTTGAGAAATTTTCCGAACATTCCGTGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
39851 CATCATTCGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
39916 TTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTCTGATCTTGTCAAACTTTTACGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
39981 TTCTTTTATAACTTCGGTTCC
196 TTCTTTTATAACTTCGGTTCC
* * * * *
40002 TTAAAGTAATGAAGATGATGCATTCCTTCGAGCAATGTTTCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
*
40067 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
40132 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGGACTTCCAAACTTGTCCAACTTTT-CGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* *
40196 TTCTTCTATAACTTCGGTTCG
196 TTCTTTTATAACTTCGGTTCC
* *
40217 TTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
40282 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
** * * * * * * *
40347 TTACAAGAGAATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGTCAAACTGTAAAGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
*
40412 TTCTTTTATAACTTCGTTTCC
196 TTCTTTTATAACTTCGGTTCC
* * * * * *
40433 TAAAAAGTAATGAAGACGATGCATTCCTTCAAGCAATTTTTCAAACATTCCATGCTCGGGAAATC
1 T-TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
40498 ACATTATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTA
65 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
40563 TTTACGCGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGG
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
** *
40628 GTTCTTTTATAACTTTTGTTCA
195 GTTCTTTTATAACTTCGGTTCC
* * *
40650 TTAAAGTAGTCAAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * *
40715 CATTATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAATCATA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTA
** * * * * * *
40780 TTTTTGTGAGAATTGTTTCTCTGTTGGCTT-TTGGATGAACTTTCGGA-CTGGTCAAACTTTTAT
130 TTTACGTGAGAATTATTTCTCTCTTGG-TTCTTGGACGAAC-TTCCGATCTTGTCAAACTTTTAC
*
40843 GAGTTCTTTTATAACTTTGGTTCC
193 GAGTTCTTTTATAACTTCGGTTCC
* * * * * * * * *
40867 TTCAAGTATTCAAGACCATCCATTTCTTCCAGCAATTTTTCGAGCATTCCAGGCACGAGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
40932 CATCCTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACATTTT-GTCTTTGAATTAAAATCTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTA
** *
40996 TTTGTGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTT-CGATCTTGTCAAACTTTTACAA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
* *
41060 GTTCCTTTATAACTTCGATTCC
195 GTTCTTTTATAACTTCGGTTCC
* *
41082 TTAAAGTATTCAAGACGATCTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
41147 CATCATTCGGTCTAAATAGTTTGTCATTTTGTGAAA-AAGTTTTGGTGTTTAAATCAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * *
41211 TTTACGTGGGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
* * *
41276 GTTCTTTTATAACTTGGGGATCA
195 GTTCTTTTATAACTT-CGGTTCC
* * * * * * * ** *
41299 TTAAATTGTACAAGACGATCCATTCCTTTGATCAATTTTTTGAATATTCCATGCTCCTGAAATCT
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* **
41364 CATCATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTGGTCTTTGGGTTAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * **
41428 TTTACGTGAGAATTATTCCTGTCATGGTTCTTGGACAAACTTTCGAACTCATCAAACTTTTACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
*
41493 GTTCTTTTATAACTTTGGTTCC
195 GTTCTTTTATAACTTCGGTTCC
* * * * * * * *
41515 ATAAAGTATT-AGAGACAATCCATTCCTTCGATCAATTTTCCGAATATTCCATTCCCGTGAAATC
1 TTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
41579 GCATCATTTGGTCTAAATAGATTGTCATACTT-TAAA-AATGTTTTGGTCTTTGGATTAAAGACT
65 ACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACT
* * * * * *
41642 CATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAACTTTCGAACTTGTAAAACTTTTA
128 TATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGTCAAACTTTTA
* * * **
41706 CAAGTACTTTTATAACTTC-CTTTG
192 CGAGTTCTTTTATAACTTCGGTTCC
* * * * *
41730 TTAAAGTATTCAAGATGATCCATTCCTTTGAGAAATATTCCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
41795 CATCATTTGGTATAAGTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * *
41860 TTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGTCAAACTTTTACGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* *
41925 TTCTTTTATTACTTCGATTCC
196 TTCTTTTATAACTTCGGTTCC
* * * * *
41946 TTAAAGTAATGAAGACGATGCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
*
42011 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * ** * * *
42076 TTACGTGAGTATTGTTTCTCTCTTGGTTCTTAAACGAACTTCCAAACTTGTCAAACTTTTACGGG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* *
42141 TTCTTTTATAACTTCTGTTCA
196 TTCTTTTATAACTTCGGTTCC
* * * ** * * *
42162 TTAATGTA-T-AAGACGATCTATTCCTTCAAGCAATTTTTCGAACATTTGATGCTCGAGAAGTCC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
42225 CATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAA-TATTTGGTCTTTGAATTAAAATCTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTTGGTCTTTGAATTAAAAACTTA
* * * * *
42289 TTTACGAGAGAATTATTTCACCCTTGGTTCTTGGACGAACTTTCGATCTTATCAAACTTTTACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
* *
42354 GTTCTTTTATAACTTCGGATCA
195 GTTCTTTTATAACTTCGGTTCC
* * * * * *
42376 TAAAAGTATTCAAGACGATCCATTCCTTCAATCAATTTTCCGAATATTCCATGGTCGTGG-AAT-
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG-GGAAATC
* *
42439 AGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTT
65 A-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * *
42504 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTCCAACTTTT-CG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
* * *
42568 AGTTCCTTTATAACTTCAGTTCA
194 AGTTCTTTTATAACTTCGGTTCC
* * * * *
42591 TTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTTTGAACATTTCATGCTCGAG-AATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * *
42655 CATCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAAACTTTCGGTCTTTGAATTAAAATCTT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * ** * * *
42720 ATTTACATGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACTTTAGAACTGGTCAAACTTTTACT
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
* * *
42785 TGTTCTTTTATAACTTGGGTTCA
194 AGTTCTTTTATAACTTCGGTTCC
* * * * * * ** *
42808 TTAAATTGTTCAAGACGATCTATTCCTTCGATCAATTTTCCGAATATTCCATGCTCTCGAAATCT
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* ** *
42873 CATCATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTGGTCTTTGGGTTAAAAACTCA
66 CATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * *
42937 TTTACGAGAGAATTATTTCTGTCATGGTTCTTGGACAAACTT-CGATCTTGTCAAACTTTTATGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
*
43001 GTTCTTTTATAACTTCGATTCC
195 GTTCTTTTATAACTTCGGTTCC
* * * * *
43023 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAA-TTTTCTGAATATTCCATTCCCGTGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
* * * * *
43087 -CAATCATTTGGCCTAAATAGATTGTCATATTT-TAAA-ACTGTTTTGGTCTTTGGATTAAAGAC
65 AC-ATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACA-AGTTTTGGTCTTTGAATTAAAAAC
* * * ** * *
43149 TCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAACTTTTGAACTTGTAAAACTTTT
127 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGTCAAACTTTT
* * *
43213 ACAAGTTCTTTTATAACTTC-CTTCG
191 ACGAGTTCTTTTATAACTTCGGTTCC
* * *
43238 TTAAAGT-TTCAAGATGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
43302 CATCATTTGGTAC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTA
66 CATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * *
43366 TTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTTCGATCTTGTCAAACTGTGACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
* *
43431 GTTCTTTTGTAACTTCGATTCC
195 GTTCTTTTATAACTTCGGTTCC
* * * * * *
43453 TTAATGTAATGAAGACGATGCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATGA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
43518 CATTATTTGGTCTAAATAGTGTGTCATTTTGTAAACAAGTTTTGGTGTTTTAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * *
43583 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGGG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* *
43648 TTCTTTTATAACTTCTGTTCG
196 TTCTTTTATAACTTCGGTTCC
* * *
43669 TTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * *
43734 CATCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATCAAAATCTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * * * *
43799 TTTATGTGAGAATTTTTTCACTGTTCGCTT-TTGGATGAACTTTCGGATC-GGTCAAACTTTTAT
130 TTTACGTGAGAATTATTTCTCTCTT-GGTTCTTGGACGAAC-TTCCGATCTTGTCAAACTTTTAC
*
43862 GAGTTCTTTTATAACTTTGGTTCC
193 GAGTTCTTTTATAACTTCGGTTCC
* * * * * *
43886 TTAAAGTTTTCAAGACCATCCATTTCTTCCAGCAATTTTTC-AAGCATTCCATGCACGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA-CATTCCATGCTCGGGAAATC
* *
43950 GCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-TATTTGGTCTTTGAATTAAAATCTT
65 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTTGGTCTTTGAATTAAAAACTT
*
44014 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTTAAACTTTTACG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
*
44079 AGTTCTTTTATAACTTCGGTTCA
194 AGTTCTTTTATAACTTCGGTTCC
* * * * * * * * *
44102 TTAAATTGTTCAAGACGATTCATTCCTTCGATCAATTTTTTGAGCATTCCATGCACGAGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * ** *
44167 CATCTTTTGGTCTAAGTAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* **
44232 TTACGTGAGAATTATTTCTCTTTTCATTCTTGGACGAACTT-CGATCTTGTCAAACTTTTACGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
*
44296 TTCTTTTATAACTTCGATTCC
196 TTCTTTTATAACTTCGGTTCC
* * * * *
44317 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * *
44382 CAGCATTTAGTCTAAATAGATTGTCATATTT-TAAA-AATGTTTTGGTCTTTGGATTAAAGACTC
66 CATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTT
* * * * * *
44445 ATTTATGTGAGAATGATTTCTCTCTTGATTCTAT-GACGAACTTTCGAACTTGTAAAACTTTTAC
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGTCAAACTTTTAC
* * *
44509 AAGTTCTTTTATAACTTC-CTTCG
193 GAGTTCTTTTATAACTTCGGTTCC
* * **
44532 TTAAAGT-TTC---A--A--C--T--TT-GAGAAATTTTCCTTACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
44584 CATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * *
44649 TTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGCCAAACTTTTACAAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
44714 ---TTTTATAACTTCGGTTCC
196 TTCTTTTATAACTTCGGTTCC
* * * * * *
44732 TTAAAGTAATGAAGGCGATGCATTCCTTCGAGCAAATTTTCGAACATTCCATGCTTGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * **
44797 CATTATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTGGTCTTTGGGTTAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * *
44861 TTTACGTGAGAATTATTTCTGC-CATGGTTCTTGGACAAACTT-TGATCTTATCAAACTTTTACG
130 TTTACGTGAGAATTATTTCT-CTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
*
44924 AGTTCTTTTATAACTTCGATTCC
194 AGTTCTTTTATAACTTCGGTTCC
* * * * * *
44947 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * *
45012 CATCATTTGGTCTAAATAGATTGTCATTTT-TAAAAAATGTTTTGGTCTTTGGATTAAAGACTCA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
45076 TTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GATGAACTTCCGAACTTGTAAAACTTTTACA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGTCAAACTTTTACG
** *
45140 AGTTCTTTTATAAC-TCCCTTCG
194 AGTTCTTTTATAACTTCGGTTCC
* * **
45162 TTAAAGT-TTC---A--A--C--T--TT-GAGAAATTTTCCTTACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
45214 CATCATTTGGTATAAATAGTTTTTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * *
45279 TTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGCCAAACTTTTACAAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
*
45344 TTATTTTATAACTTCGGTTCC
196 TTCTTTTATAACTTCGGTTCC
* * * * *
45365 TTAAAGTAATGAAGGCGATGCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * **
45430 CATTATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTGGTCTTTGGGTTAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * *
45494 TTTACGAGAGAATTATTTCTGC-CATGGTTCTTGGACAAACTT-TGATCTTGTCAAACTTTTACG
130 TTTACGTGAGAATTATTTCT-CTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
*
45557 AGTTCTTTTATAACTTCGATTCC
194 AGTTCTTTTATAACTTCGGTTCC
* * * * * *
45580 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * *
45645 CATCATTTGGTCTAAATAGATTGTCATTTT-TAAAAAATGTTTTGGTCTTTGGATTAAAGACTCA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
45709 TTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAACTTCCGAACTTGTAAAAATTTTACA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGTCAAACTTTTACG
* *
45773 AGTTCTTTTATAACTTC-CTTCG
194 AGTTCTTTTATAACTTCGGTTCC
* * * * *
45795 TTAAAGT-TTCAAGATGATCCATTCCTTTGAGAAATTTTCCGAACATTCCGTGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
45859 CATCATTTGGTATAAGTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * **
45924 TTACATGAGTATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGTCAAACTTTTATAAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
*
45989 TTCCTTTTATAACTTCGATTCC
196 TT-CTTTTATAACTTCGGTTCC
* * * * * *
46011 TTAAAGTAATGAAGACGATGCATTCCTCCGAGTAATTTTCCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
46076 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTTGGTGTTTGTATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
46141 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATTTCCAAACTTGTCAAACTTTTACGTG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* *
46206 TTCTTTTATAACTTCTGTTCA
196 TTCTTTTATAACTTCGGTTCC
* * * * *
46227 TTAATGTATTCAAGACGTTCCACTCCTTCCAGCAATTTTTAGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * *
46292 CATCGTTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAAACTTTTGGTCTTTGAACTAAAATCTT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * ** * *
46357 ATTTATGTGAGAATTGTTTCTCTGTTGGCTT-TTGGATAAACTTTCGGA-CTGGTCAAACTTTTA
129 ATTTACGTGAGAATTATTTCTCTCTTGG-TTCTTGGACGAAC-TTCCGATCTTGTCAAACTTTTA
* *
46420 TGAGTTCTTTTATAACTTTGGTTCC
192 CGAGTTCTTTTATAACTTCGGTTCC
* * * * * ** *
46445 TTAAAGTATTCAAGACCATCCATTTCTTCCAGCAATTTTTCGAGCATTCCATGCACAAGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* **
46510 CATCATTTGGTTTTAAATAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATA-TT
66 CATCATTTGG-TCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAA-ACTT
* * * * * * *
46574 ATTTGCATGAGAATTATTTCTCTCTTGGTTTTTGGACGAACAT-CAATCTTGTCAAAGTTTTACA
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
* *
46638 AATTCTTTTATAACTTCGATTCC
194 AGTTCTTTTATAACTTCGGTTCC
* * *
46661 TTAAAGTATTCAAGTCGATCTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
46726 CATCATTCGGTCTAAATAGTTTGTCATTTTGTGAAA-AAGTTTTGGTGTTTAAATCAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * *
46790 TTTACATGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
* *
46855 GTTCTTTTATAACTT-GTGATCA
195 GTTCTTTTATAACTTCG-GTTCC
* * * * * * **
46877 TTAAATTGTTGAAAACGATCCATTCCTT-GATCAA-TTTTCTGAATATTCCATGCTCTTGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
* * * * **
46940 TCATCATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTTGTCTCTGGGTTAAAAACTT
65 ACATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * * *
47004 ATTTACGTGAGAGTTATTCCTGTCATT-GTTCTTGGACAAAGTTTCGAACTCGTCAAACTTTTAC
129 ATTTACGTGAGAATTATTTCTCTC-TTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTAC
*
47068 GAGTTCTTTTATAACTTTGGTTCC
193 GAGTTCTTTTATAACTTCGGTTCC
* ** * * * **
47092 TTAAAGTATT-AGAGACAATCCATTCCTTCGATAAATTTTTCGAATATTCCATTCCCGTAAAATC
1 TTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * **
47156 GCATCATTTGGTCTAAATAGATTGTCATATTT-TAAA-AATGTTTTGGTCTTTGGATTAAGGACT
65 ACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACT
* * * * * *
47219 CAATTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAACTTCCGAACTTGTAAAACTTTTA
128 TATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGTCAAACTTTTA
* * *
47283 CAAGTTCTTTTATAACTTC-CTTCA
192 CGAGTTCTTTTATAACTTCGGTTCC
* ** * *
47307 TTAAAGTATTCAAGATGATCCATTCCTTTC-AG-AAAATTTCTGAATATTCCATGCTCGAGAAAT
1 TTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAAT
* * *
47370 CACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTT
64 CACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * * * * * * *
47435 ATTTACATGAGAATTATTTCTCACATGGTTTTTTGACAAACTTCCGATCATGTCGAACTTTTAAG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
*
47500 AGTTCTTTTATAACTTCGATTCC
194 AGTTCTTTTATAACTTCGGTTCC
* * ** * *
47523 TTAAAGTAATGAAGACGAAGCATTCCTTCGAGAAATTTTTCAAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* **
47588 CATCATTTGGTCT-AATAGTTTGTCATTTTGTAAACAACTTTTGGTGGTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * *
47652 TTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGGG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* **
47717 TTCTTTTATAACTTCTGTTAG
196 TTCTTTTATAACTTCGGTTCC
** * * * *
47738 TTAAAGTA-T-AAGACGATCCATTCCTTTAAGAAATTTTTTGAACATTCCATGGTCGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * *
47801 CATCATTTGGTCTAAATAGTTTTTCATTTTGTGAAA-AA-TTTTAGTGTTTAAATCAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
47864 TTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGATGTTTTCAAACTTTTCCGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
**
47929 GTTCTTTTATAACTTCGGTTTA
195 GTTCTTTTATAACTTCGGTTCC
* * * * * * * *
47951 TTAAATTGTTCAAGATGATCCATTCCTTCGATCAATTTTTTGAGCATTCCATGCACGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
48016 CATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAACTTTTGGTGTTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * *
48081 TTACGTGAGTATTGTTTCTCTCTTGGTTCCTGGATGAACTTCCGAACTTTTCAAACTTTTAC-AG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA-
*
48145 GTTCTTTTATAACTT-GTGTTCG
195 GTTCTTTTATAACTTCG-GTTCC
* * ** * * *
48167 TTAAAGTA-T-AAGACGATCCATCCCTTCAAAAAAAATTTT-GAACATTCCATGGTCGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
** * * * * *
48229 ACATCATTCAGTCTAAATTGTTTGTCATTTTGTGAAA-AA--TTTGCTGTTTAAATCAAAAACTT
65 ACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTT
* * * *
48291 ATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGATCTTGTCAAACTTTTAAG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
*
48356 AGTTCTTTTATAACTTCGGTTCA
194 AGTTCTTTTATAACTTCGGTTCC
* * * * * * * * *
48379 TTAAATTGTTCAAGATGATCCATTCATTCGATCAATTTTTGGAGCATTCCATGCACGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * ** * * *
48444 CATCATTTGGTCTAAATAGTTTGTTATTTTTTCAACAACATTTGGTCTTTGAATGAAAATCTTTT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
48509 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTT-CGATCTTGTCAAACTTTTACGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* *
48573 TTCTTTCATAACTTCGATTCC
196 TTCTTTTATAACTTCGGTTCC
* ** *
48594 TTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGACAAAACA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
48658 CATCATTCT-GTCTAAATAGTTTGTCATTTTTCTGAAA-AAGTTTTGGTGTTTAAATCAAAAACT
66 CATCATT-TGGTCTAAATAGTTTGTCA-TTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACT
* * *
48721 TATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGATGTTGTCAAACTTTTA
128 TATTTACGTGA-GAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTA
* *
48785 CGAGTTCTTTTATAACTTTGGTTCA
192 CGAGTTCTTTTATAACTTCGGTTCC
* * ** * * * *
48810 TTAAATTATTCAAGACGATCCGTTCCTTCGATTAATTTTTTGAGCATTCCAAGCAT-GGGAAATA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGGGAAATC
* * * ** * *
48874 ACATCATTTGGACTAAAAATAATTTTTCATTTTGTAAACAACATTTGGCCTTTGAATTAAAATCT
65 ACATCATTTGGTCT--AAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACT
* * *
48939 TATTTACGCGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTT-CGATCTTATC-AA----T--
128 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTAC
**
48996 GAGTTCTTTTATAACTTCTATTCC
193 GAGTTCTTTTATAACTTCGGTTCC
* * * * * *
49020 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * ** * *
49085 CATCATTTGGTCTAAATAGATTGTCATATTT-TAAA-ATGTTTCGGTCTTTGGTTTAAAGACTCA
66 CATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * **
49148 TTTATGTGAGAATTATTTCCCTCTTGATTCTATGG-CGAACTTCCGAACTTGTAAAACTTTTAAA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTCCGATCTTGTCAAACTTTTACG
* *
49212 AGTTCTTTTATAACTTC-CTTCG
194 AGTTCTTTTATAACTTCGGTTCC
* * * *
49234 TTAAAGT-TTCAAGATGATCCATTCC-TCTGAGAAATTTTTTGAGCATTCCATGCTCGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * * * *
49297 ACATCGTTTAGTATAAATAGTTTGTCATTTTATAAACAACTTCTT-GTATTTGAATTAAAATCTT
65 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTT-TTGGTCTTTGAATTAAAAACTT
* **
49361 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAACTT-CGATCTTGTCAATGTTTTACG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACG
* *
49425 AGTTCATTTATAACTTCGATTCC
194 AGTTCTTTTATAACTTCGGTTCC
* * *
49448 TTAAAGTATTTAAGACGGTGCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
49513 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAATTCAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * *
49578 TTACGTGAAAATTTTTTCTCTCTTGGTTCTTGGACGAACTTCCAAACTTGTCGAACTTTT-CGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
* * *
49642 TTCTTCTATAACTTTGGTTCG
196 TTCTTTTATAACTTCGGTTCC
* * * * * *
49663 TTAAAGTATTCAAGATGATCCTTTCCTTCCAGCAATTTTTTGAACATTCCAT-CTAGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
** * *
49727 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACCTTTGATCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
* * * * * * * * *
49792 TTACATGAGAATTATTTCTCACATGGTTTTTAGACAAACTTCCGATCTTGTCAAACTGTGATGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
*
49857 TTTTTTTATAACTTCGGTTCC
196 TTCTTTTATAACTTCGGTTCC
* * * *
49878 TTAATGTAATGAAGACGATGCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
* * * * * *
49942 ACATTATTTGGTCTAAATTGTTTGACATTTTGTAAATAAGTTTTGGTGTTTTAATTAAAAACTTA
65 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
50007 TTTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCCAAACTTGTCAAATTTTTACGG
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
* *
50072 GTTCTTTTATAACTTCTGTTCG
195 GTTCTTTTATAACTTCGGTTCC
* * *
50094 TTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * * *
50159 CACCAGTTGGTTTCAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAACCTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
50224 TTTATGTGAGAATTTTTTCACTGTTGGCTT-TTGGATGAACTTTCGGA-CTGGTCAAACTTTTA
130 TTTACGTGAGAATTATTTCTCTCTTGG-TTCTTGGACGAAC-TTCCGATCTTGTCAAACTTTTA
50286 TGAAAATTTG
Statistics
Matches: 8639, Mismatches: 1437, Indels: 414
0.82 0.14 0.04
Matches are distributed among these distances:
199 12 0.00
200 10 0.00
201 6 0.00
202 266 0.03
203 24 0.00
204 1 0.00
205 2 0.00
206 1 0.00
207 53 0.01
208 26 0.00
209 8 0.00
210 85 0.01
211 3 0.00
212 130 0.02
213 409 0.05
214 974 0.11
215 2433 0.28
216 2738 0.32
217 1142 0.13
218 274 0.03
219 42 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAAACTTAT
TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAG
TTCTTTTATAACTTCGGTTCC
Found at i:41931 original size:431 final size:431
Alignment explanation
Indices: 39787--52458 Score: 12547
Period size: 431 Copynumber: 29.6 Consensus size: 431
39777 AATTCCTTCG
* * * * *
39787 TTAAAGT-TTCAAGATGATCCATTCCTTTGAGAAATTTTCCGAACATTCCGTGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
39851 CATCATTCGGTATAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * * * *
39916 TTACATGAGAATTATTTCTCACATGGTTTTTGGACAAAC-TTCTGATCTTGTCAAACTTTTACGA
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTC-GATCTTGTCAAACTTTTACGA
* * * * *
39980 GTTCTTTTATAACTTCGGTTCCTTAAAGTAATGAAGATGATGCATTCCTTCGAGCAATGTTTCGA
195 GTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
*
40045 ACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
259 ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * *
40110 GGTGTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTAGACGGACTTCC
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * * *
40175 AAACTTGTCCAACTTTT-CGAGTTCTTCTATAACTTCGGTTCG
389 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* *
40217 TTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
40282 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
** * * * * * * * *
40347 TTACAAGAGAATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGTCAAACTGTAAAGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
* * * * * *
40412 TTCTTTTATAACTTCGTTTCCTAAAAAGTAATGAAGACGATGCATTCCTTCAAGCAATTTTTCAA
196 TTCTTTTATAACTTCG-TTCCT-TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * *
40477 ACATTCCATGCTCGGGAAATCACATTATTTGGTCTAAATAGTTTGTCAATTTGTAAACAAGTTTT
259 ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * *
40542 GGTGTTTGAATTAAAAACTTATTTACGCGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * *
40607 AAACTTGTCAAACTTTTACGGGTTCTTTTATAACTTTTGTTCA
389 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * *
40650 TTAAAGTAGTCAAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
40715 CATTATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAATCATA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAATCTTA
** * * * * *
40780 TTTTTGTGAGAATTGTTTCTCTGTTGGCTT-TTGGATGAACTTTCGGA-CTGGTCAAACTTTTAT
130 TTTACGTGAGAATTATTTCTCTCTTGG-TTCTTGGACGAACTTTC-GATCTTGTCAAACTTTTAC
* * * * *
40843 GAGTTCTTTTATAACTTTGGTTCCTTCAAGTATTCAAGACCATCCATTTCTTCCAGCAATTTTTC
193 GAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * * *
40908 GAGCATTCCAGGCACGAGAAATCGCATCCTTTGGTCTAAATAGTTTGTCATTTTGTAAACAACAT
257 GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GT
* **
40973 TTT-GTCTTTGAATTAAAATCTTATTTGTGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
321 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* * * * *
41037 T-CGATCTTGTCAAACTTTTACAAGTTCCTTTATAACTTCGATTCC
386 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* *
41082 TTAAAGTATTCAAGACGATCTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * *
41147 CATCATTCGGTCTAAATAGTTTGTCATTTTGTGAAA-AAGTTTTGGTGTTTAAATCAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * * *
41211 TTTACGTGGGAATTGTTTCTCTCTTAGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * * * * * * *
41276 GTTCTTTTATAACTTGGGGATCATTAAATTGTACAAGACGATCCATTCCTTTGATCAATTTTTTG
195 GTTCTTTTATAACTT--CGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* ** * *
41341 AATATTCCATGCTCCTGAAATCTCATCATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTT
258 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGTT
** * * * *
41405 TTGGTCTTTGGGTTAAAAACTTATTTACGTGAGAATTATTCCTGTCATGGTTCTTGGACAAACTT
322 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTT
* **
41470 TCGAACTCATCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
387 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * * * *
41515 ATAAAGTATT-AGAGACAATCCATTCCTTCGATCAATTTTCCGAATATTCCATTCCCGTGAAATC
1 TTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
41579 GCATCATTTGGTCTAAATAGATTGTCATACTT-TAAA-AATGTTTTGGTCTTTGGATTAAAGA-C
65 ACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAA-CTTTTGGTCTTTGAATTAAA-ATC
* * * * *
41641 TCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAACTTTCGAACTTGTAAAACTTTT
127 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTTCGATCTTGTCAAACTTTT
* * * ** * * * * *
41705 ACAAGTACTTTTATAACTTCCTTTGTTAAAGTATTCAAGATGATCCATTCCTTTGAGAAATATTC
191 ACGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * *
41770 CGAACATTCCATGCTCGGGAAATCACATCATTTGGTATAAGTAGTTTGTCATTTTGTAAACAACT
256 CGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
* * * * * *
41835 TTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACT
321 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* * * *
41900 TCCGATCTTGTCAAACTTTTACGAGTTCTTTTATTACTTCGATTCC
386 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * *
41946 TTAAAGTAATGAAGACGATGCATTCCTTCGAGAAATTTTCCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
42011 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTGTTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * ** * * * *
42076 TTACGTGAGTATTGTTTCTCTCTTGGTTCTTAAACGAACTTCCAAACTTGTCAAACTTTTACGGG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
* * * *
42141 TTCTTTTATAACTTCTGTTCATTAATGTA-T-AAGACGATCTATTCCTTCAAGCAATTTTTCGAA
196 TTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
** * * *
42204 CATTTGATGCTCGAGAAGTCCCATCATTTGGTCTAAATCGTTTGTCATTTTGTAAACAA-TATTT
260 CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT-TTT
* * * * *
42268 GGTCTTTGAATTAAAATCTTATTTACGAGAGAATTATTTCACCCTTGGTTCTTGGACGAACTTTC
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * * *
42333 GATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCGGATCA
389 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * *
42376 TAAAAGTATTCAAGACGATCCATTCCTTCAATCAATTTTCCGAATATTCCATGGTCGTGG-AAT-
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCG-GGAAATC
* * * *
42439 AGCATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTT
65 A-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTT
* * * *
42504 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTCCAACTTTT-CG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACG
* * * * *
42568 AGTTCCTTTATAACTTCAGTTCATTAAAGTATTCAAGACAATCCATTCCTTCCAGCAATTTTTTG
194 AGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * *
42633 AACATTTCATGCTCGAG-AATCACATCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAAACT
258 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAAGT
* * * * * *
42697 TTCGGTCTTTGAATTAAAATCTTATTTACATGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACT
321 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
** * ** * *
42762 TTAGAACTGGTCAAACTTTTACTTGTTCTTTTATAACTTGGGTTCA
386 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * * ** *
42808 TTAAATTGTTCAAGACGATCTATTCCTTCGATCAATTTTCCGAATATTCCATGCTCTCGAAATCT
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * ** * *
42873 CATCATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTGGTCTTTGGGTTAAAAACTCA
66 CATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * * * *
42937 TTTACGAGAGAATTATTTCTGTCATGGTTCTTGGACAAAC-TTCGATCTTGTCAAACTTTTATGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
*
43001 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAA-TTTTCTG
195 GTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-G
* * * * * * *
43065 AATATTCCATTCCCGTGAAATC-CAATCATTTGGCCTAAATAGATTGTCATATTT-TAAA-ACTG
258 AACATTCCATGCTCGAGAAATCAC-ATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACA-AG
* * * * *
43127 TTTTGGTCTTTGGATTAAAGACTCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAA
320 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAA
** * * ** *
43191 CTTTTGAACTTGTAAAACTTTTACAAGTTCTTTTATAAC-TTCCTTCG
384 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * *
43238 TTAAAGT-TTCAAGATGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
43302 CATCATTTGGTAC-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTA
66 CATCATTTGGT-CTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * * * * * *
43366 TTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTTCGATCTTGTCAAACTGTGACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * * *
43431 GTTCTTTTGTAACTTCGATTCCTTAATGTAATGAAGACGATGCATTCCTTCGAGCAATTTTTCGA
195 GTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * *
43496 ACATTCCATGCTCGAGAAATGACATTATTTGGTCTAAATAGTGTGTCATTTTGTAAACAAGTTTT
259 ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * *
43561 GGTGTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCC
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC
* * *
43626 AAACTTGTCAAACTTTTACGGGTTCTTTTATAACTTCT-GTTCG
389 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCC
* * *
43669 TTAAAGTATTCAAGACGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
43734 CATCATTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATCAAAATCTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * * * * * * *
43799 TTTATGTGAGAATTTTTTCACTGTTCGCTT-TTGGATGAACTTTCGGATC-GGTCAAACTTTTAT
130 TTTACGTGAGAATTATTTCTCTCTT-GGTTCTTGGACGAACTTTC-GATCTTGTCAAACTTTTAC
* * * * *
43862 GAGTTCTTTTATAACTTTGGTTCCTTAAAGTTTTCAAGACCATCCATTTCTTCCAGCAATTTTTC
193 GAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* *
43927 -AAGCATTCCATGCACGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-T
257 GAA-CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGT
*
43990 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
321 -TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * *
44055 TTCCGATCTTGTTAAACTTTTACGAGTTCTTTTATAACTTCGGTTCA
385 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * * * * *
44102 TTAAATTGTTCAAGACGATTCATTCCTTCGATCAATTTTTTGAGCATTCCATGCACGAGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
44167 CATCTTTTGGTCTAAGTAGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* **
44232 TTACGTGAGAATTATTTCTCTTTTCATTCTTGGACGAAC-TTCGATCTTGTCAAACTTTTACGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
*
44296 TTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAA
196 TTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
* * * * * * *
44361 TATTCCATTCCCGTGAAATCACAGCATTTAGTCTAAATAGATTGTCATATTT-TAAA-AATGTTT
260 CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAA-GTTT
* * * * * *
44424 TGGTCTTTGGATTAAAGACTCATTTATGTGAGAATGATTTCTCTCTTGATTCTAT-GACGAACTT
323 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTT
* * * ** *
44488 TCGAACTTGTAAAACTTTTACAAGTTCTTTTATAAC-TTCCTTCG
387 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * **
44532 TTAAAGT-TTC---A--A--C--T--TT-GAGAAATTTTCCTTACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
44584 CATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAAGTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * * * * * * *
44649 TTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGCCAAACTTTTACAAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
* * * * *
44714 ---TTTTATAACTTCGGTTCCTTAAAGTAATGAAGGCGATGCATTCCTTCGAGCAAATTTTCGAA
196 TTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
* * * *
44776 CATTCCATGCTTGGGAAATCACATTATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTT
260 CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGTTTT
** * *
44840 GGTCTTTGGGTTAAAAACTTATTTACGTGAGAATTATTTCTGC-CATGGTTCTTGGACAAACTT-
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCT-CTCTTGGTTCTTGGACGAACTTC
* * * * *
44903 TGATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCGATTCC
388 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * *
44947 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAATATTCCATTCCCGTGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * *
45012 CATCATTTGGTCTAAATAGATTGTCATTTT-TAAAAAATGTTTTGGTCTTTGGATTAAAGA-CTC
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAA-ATCTT
* * * * * *
45075 ATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GATGAACTTCCGAACTTGTAAAACTTTTAC
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTTCGATCTTGTCAAACTTTTAC
* * * * * * *
45139 AAGTTCTTTTATAACTCCCTTCGTTAAAGT-TTC---A--A--C--T--TT-GAGAAATTTTCCT
193 GAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * *
45191 TACATTCCATGCTCGGGAAATCACATCATTTGGTATAAATAGTTTTTCATTTTGTAAACAACTTT
258 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * * * *
45256 TGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAACTTC
323 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTC
* * * * *
45321 CGATCTTGCCAAACTTTTACAAGTTATTTTATAACTTCGGTTCC
388 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * *
45365 TTAAAGTAATGAAGGCGATGCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTTGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * ** *
45430 CATTATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGTTTTGGTCTTTGGGTTAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * *
45494 TTTACGAGAGAATTATTTCTGC-CATGGTTCTTGGACAAACTTT-GATCTTGTCAAACTTTTACG
130 TTTACGTGAGAATTATTTCT-CTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACG
*
45557 AGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCG
194 AGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * * * *
45622 AATATTCCATTCCCGTGAAATCGCATCATTTGGTCTAAATAGATTGTCATTTT-TAAAAAATGTT
258 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-GTT
* * * * *
45686 TTGGTCTTTGGATTAAAGACTCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAACT
322 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACT
* * * ** *
45750 TCCGAACTTGTAAAAATTTTACAAGTTCTTTTATAAC-TTCCTTCG
386 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * *
45795 TTAAAGT-TTCAAGATGATCCATTCCTTTGAGAAATTTTCCGAACATTCCGTGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
45859 CATCATTTGGTATAAGTAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * * * * * * **
45924 TTACATGAGTATTATTTCTCACATGGTTTTTGGACAAACTTCCGATCTTGTCAAACTTTTATAAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
* * * * * *
45989 TTCCTTTTATAACTTCGATTCCTTAAAGTAATGAAGACGATGCATTCCTCCGAGTAATTTTCCGA
196 TT-CTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* *
46054 ACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAAGTTTT
259 ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * *
46119 GGTGTTTGTATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACAAATTTCC
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC
* * *
46184 AAACTTGTCAAACTTTTACGTGTTCTTTTATAACTTCT-GTTCA
389 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCC
* * * * *
46227 TTAATGTATTCAAGACGTTCCACTCCTTCCAGCAATTTTTAGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
46292 CATCGTTTGGTTTAAATAGTTTGTCATTTTGTAAAAAAAACTTTTGGTCTTTGAACTAAAATCTT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT--AAACAACTTTTGGTCTTTGAATTAAAATCTT
* * * ** *
46357 ATTTATGTGAGAATTGTTTCTCTGTTGGCTT-TTGGATAAACTTTCGGA-CTGGTCAAACTTTTA
129 ATTTACGTGAGAATTATTTCTCTCTTGG-TTCTTGGACGAACTTTC-GATCTTGTCAAACTTTTA
* * * * *
46420 TGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACCATCCATTTCTTCCAGCAATTTTT
192 CGAGTTCTTTTATAAC-TTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * * * * *
46485 CGAGCATTCCATGCACAAGAAATCGCATCATTTGGTTTTAAATAGTTTGTCATTTTGTAAACAAC
256 CGAACATTCCATGCTCGAGAAATCACATCATTTGG-TCTAAATAGTTTGTCATTTTGTAAACAAG
* * * *
46550 ATTTGGTCTTTGAATTAAAATA-TTATTTGCATGAGAATTATTTCTCTCTTGGTTTTTGGACGAA
320 TTTTGGTCTTTGAATTAAAA-ACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
46614 CAT-C-AATCTTGTCAAAGTTTTACAAATTCTTTTATAACTTCGATTCC
384 CTTCCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * *
46661 TTAAAGTATTCAAGTCGATCTATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * *
46726 CATCATTCGGTCTAAATAGTTTGTCATTTTGTGAAA-AAGTTTTGGTGTTTAAATCAAAAACTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * * *
46790 TTTACATGAGAATTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* * * * * *
46855 GTTCTTTTATAACTT-GTGATCATTAAATTGTTGAAAACGATCCATTCCTT-GATCAA-TTTTCT
195 GTTCTTTTATAACTTCGT--TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-
* ** * *
46917 GAATATTCCATGCTCTTGAAATCTCATCATTTGGTCTAAATAGTTTCTCATTATT-TAAACAAGT
257 GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATT-TTGTAAACAAGT
* * ** * * * * *
46981 TTTTGTCTCTGGGTTAAAAACTTATTTACGTGAGAGTTATTCCTGTCATT-GTTCTTGGACAAAG
321 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTC-TTGGTTCTTGGACGAAC
* *
47045 TTTCGAACTCGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
385 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* ** * * * **
47092 TTAAAGTATT-AGAGACAATCCATTCCTTCGATAAATTTTTCGAATATTCCATTCCCGTAAAATC
1 TTAAAGTATTCA-AGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
47156 GCATCATTTGGTCTAAATAGATTGTCATATTT-TAAA-AATGTTTTGGTCTTTGGATTAAGGA-C
65 ACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAA-CTTTTGGTCTTTGAATTAA-AATC
* * * * * * *
47218 TCAATTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAACTTCCGAACTTGTAAAACTTTT
127 TTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAACTTTCGATCTTGTCAAACTTTT
* * * * **
47282 ACAAGTTCTTTTATAACTTCCTTCATTAAAGTATTCAAGATGATCCATTCCTTTC-AG-AAAATT
191 ACGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCC-TTCGAGCAATTTT
* *
47345 TCTGAATATTCCATGCTCGAGAAATCACATCATTTGGTATAAATAGTTTGTCATTTTGTAAACAA
255 TC-GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * * * *
47410 CTTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCACATGGTTTTTTGACAAA
319 GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
47475 CTTCCGATCATGTCGAACTTTTAAGAGTTCTTTTATAACTTCGATTCC
384 CTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * ** * *
47523 TTAAAGTAATGAAGACGAAGCATTCCTTCGAGAAATTTTTCAAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
** *
47588 CATCATTTGGTCT-AATAGTTTGTCATTTTGTAAACAACTTTTGGTGGTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * * * * *
47652 TTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTTTTACGGG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
** ** * *
47717 TTCTTTTATAACTTCTGTTAGTTAAAGTA-T-AAGACGATCCATTCCTTTAAGAAATTTTTTGAA
196 TTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
* *
47780 CATTCCATGGTCGAGAAATCACATCATTTGGTCTAAATAGTTTTTCATTTTGTGAAA-AA-TTTT
260 CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTTT
* * * * * * *
47843 AGTGTTTAAATCAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC
** * * * **
47908 GATGTTTTCAAACTTTTCCGAGTTCTTTTATAACTTCGGTTTA
389 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * * * *
47951 TTAAATTGTTCAAGATGATCCATTCCTTCGATCAATTTTTTGAGCATTCCATGCACGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * *
48016 CATCATTTGGTCTAAATAGTTTGTTATTTTGTAAACAACTTTTGGTGTTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * * * * * *
48081 TTACGTGAGTATTGTTTCTCTCTTGGTTCCTGGATGAACTTCCGAACTTTTCAAACTTTTAC-AG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA-
* * * * ** *
48145 GTTCTTTTATAACTTGTGTTCGTTAAAGTA-T-AAGACGATCCATCCCTTCAAAAAAAATTTT-G
195 GTTCTTTTATAACTT-CGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTTCG
* ** *
48207 AACATTCCATGGTCGAGAAATCACATCATTCAGTCTAAATTGTTTGTCATTTTGTGAAA-AA--T
258 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTT
* * * * * * *
48269 TTGCTGTTTAAATCAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGATGAACTT
322 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTT
* * * *
48334 CCGATCTTGTCAAACTTTTAAGAGTTCTTTTATAACTTCGGTTCA
387 CCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * * * * *
48379 TTAAATTGTTCAAGATGATCCATTCATTCGATCAATTTTTGGAGCATTCCATGCACGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * *
48444 CATCATTTGGTCTAAATAGTTTGTTATTTTTTCAACAACATTTGGTCTTTGAATGAAAATCTTTT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
48509 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC-TTCGATCTTGTCAAACTTTTACGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
* *
48573 TTCTTTCATAACTTCGATTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TTTTCGAA
196 TTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
* * *
48637 CATTCCATGCTCGACAAAACACATCATTCT-GTCTAAATAGTTTGTCATTTTTCTGAAA-AAGTT
260 CATTCCATGCTCGAGAAATCACATCATT-TGGTCTAAATAGTTTGTCA-TTTTGT-AAACAAGTT
* * * *
48700 TTGGTGTTTAAATCAAAAACTTATTTACGT-AGGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
322 TTGGTCTTTGAATTAAAAACTTATTTACGTGA-GAATTATTTCTCTCTTGGTTCTTGGACGAACT
* ** *
48764 TTCGATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCA
386 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * ** * * * *
48810 TTAAATTATTCAAGACGATCCGTTCCTTCGATTAATTTTTTGAGCATTCCAAGCAT-GGGAAATA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGGGAAATC
* * * * *
48874 ACATCATTTGGACTAAAAATAATTTTTCATTTTGTAAACAACATTTGGCCTTTGAATTAAAATCT
65 ACATCATTTGGTCT--AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCT
* * *
48939 TATTTACGCGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC-TTCGATCTTATC-AA----T--
128 TATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTAC
* *
48996 GAGTTCTTTTATAACTTCTATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTC
193 GAGTTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* * * * * * *
49061 GAATATTCCATTCCCGTGAAATCGCATCATTTGGTCTAAATAGATTGTCATATTT-TAAA-ATGT
257 GAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAAGT
* ** * * * * *
49124 TTCGGTCTTTGGTTTAAAGACTCATTTATGTGAGAATTATTTCCCTCTTGATTCTATGG-CGAAC
321 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAAC
* ** ** *
49188 TTCCGAACTTGTAAAACTTTTAAAAGTTCTTTTATAAC-TTCCTTCG
385 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * *
49234 TTAAAGT-TTCAAGATGATCCATTCC-TCTGAGAAATTTTTTGAGCATTCCATGCTCGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
49297 ACATCGTTTAGTATAAATAGTTTGTCATTTTATAAACAACTTCTT-GTATTTGAATTAAAATCTT
65 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT-TTGGTCTTTGAATTAAAATCTT
* **
49361 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC-TTCGATCTTGTCAATGTTTTACG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACG
* * * *
49425 AGTTCATTTATAACTTCGATTCCTTAAAGTATTTAAGACGGTGCATTCCTTCGAGCAATTTTTCG
194 AGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* *
49490 AACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTT
258 AACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTT
* * * *
49555 TGGTGTTTGAATTCAAAACTTATTTACGTGAAAATTTTTTCTCTCTTGGTTCTTGGACGAACTTC
323 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTC
* * * *
49620 CAAACTTGTCGAACTTTT-CGAGTTCTTCTATAACTTTGGTTCG
388 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * *
49663 TTAAAGTATTCAAGATGATCCTTTCCTTCCAGCAATTTTTTGAACATTCCAT-CTAGAGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* *
49727 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACCTTTGATCTTTGAATTAAAATCTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * * * * * * * * *
49792 TTACATGAGAATTATTTCTCACATGGTTTTTAGACAAACTTCCGATCTTGTCAAACTGTGATGAG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
* * * * *
49857 TTTTTTTATAACTTCGGTTCCTTAATGTAATGAAGACGATGCATTCCTTCGAGCAA-TTTTCTGA
196 TTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GA
* * * * *
49921 ACATTCCATGCTCGGGAAATCACATTATTTGGTCTAAATTGTTTGACATTTTGTAAATAAGTTTT
259 ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTT
* * * * *
49986 GGTGTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTATTGGACGAACTTCC
324 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCC
* * * *
50051 AAACTTGTCAAATTTTTACGGGTTCTTTTATAACTTCT-GTTCG
389 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCC
* * *
50094 TTAAAGTATTCAAGATGATCCATTCCTTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * * *
50159 CACCAGTTGGTTTCAATAGTTTGTCATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAACCTTA
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * * * * * *
50224 TTTATGTGAGAATTTTTTCACTGTTGGCTT-TTGGATGAACTTTCGGA-CTGGTCAAACTTTTAT
130 TTTACGTGAGAATTATTTCTCTCTTGG-TTCTTGGACGAACTTTC-GATCTTGTCAAACTTTTAC
* * * * * * * * * *
50287 GA--------A-AATTTGGTTCCTTAAATTTTTCAAGACTATCCGTTTCTTCCAACAATTTTTTG
193 GAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * *** * * * * *
50343 AGCATTCCATGCAT-GAGAAATCGCATCATTTGGTCTTTGAATTAAAATCTTATTTACGT-GAGA
258 AACATTCCATGC-TCGAGAAATCACATCATTTGGTC--T-AAATAGTTTGTCATTT-TGTAAACA
** ** ** ** * ** * *
50406 A-TTTTCTCTCTCTTGGTTCTTCGACGAACTT-TCGAACTTGTTAA--ACTTT-T-AC-GGGTTC
318 AGTTTT-GGTCT-TT-G-AATT--AAAAACTTAT-TTACGTGAGAATTA-TTTCTCTCTTGGTTC
** * * * * * * *
50464 TTTTA-TAACTTCTG---TTCGTTAAA-GTATAAGATGATTCATTCCTTCA-AGCCATTT--TT-
375 TTGGACGAACTTCCGAACTT-GTCAAACTTTTACGA-G-TTC-TT--TT-ATA-AC-TTTGGTTC
50520 C
431 C
* * * * **** * * * * *** ** * *
50521 --AAA-CATTC--GATGCTCGA-GAAATCGCATC-ATTTGGTCTAAATCGTTTGTTATTTGGTAA
1 TTAAAGTATTCAAGACGATCCATTCCTTCG-AGCAATTT-TTC-GAA-CATTCCATGCTCGGGAA
* * * * * * *
50579 AT-A-A-CATTTGGTCTTTGAATTAATATCTTATTTACATG-AGAATTATTTCTCTCTTGGT-TC
62 ATCACATCATTTGGTC--T-AAATAGTTTGTCATTT---TGTA-AA-CA--ACT-T-TTGGTCT-
* * * * ** * * * ** ** * *
50639 TTGGATGAACATC-GAACT-CGTCA-AA--CTTT-T-AC--GAGTT-TTTTAATAACTTTGGTTC
114 TTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTG-GTTCTTGGACGAACTTTCGATC
* * * * * * **
50694 CT-T-AAAGTATTA-TAG-------ACAA-TT-ATTCCTTCGA----T-----C-A---ATT--T
178 TTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCT
* * * * *
50732 TC-TG-AA-TATTC---CATTCC-CG-T---GAAATCGCATCATTTGGTCTAAATAGATTGTCAT
243 TCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCAT
* * * * * *
50786 ATTT-TAAA-AATGTATTGGTCTTTGGATTGAAGACTCATTTATGTGAGAATTATTTCTCTCTTG
308 -TTTGTAAACAA-GTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTG
* * * *
50849 ATTCTAT-GACGAACTTCCGAACTTGTAAAACTTTTACAAGTTCTTTTATAACTTCT--TTCG
371 GTTCT-TGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCC
* * * * *
50909 TTAAAGTATTCAAGATGATCCATTCCTTTGAGAAATTTTCCGAACATTCCATGCTCGGGAAAACA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * *
50974 CATCATTTGGTATAAGTAGTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAATTAAAAACTTAT
66 CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
* * * * * * *
51039 TTACGTGAGTATTGTTTCTCTCTTGGTTCTTAGACAAACTTTCGAACTTGTCCAACTTTTACGGG
131 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
* * ** * *
51104 TTCTTTTGTAACATCTGTTGGTTAAAGTA-T-AAGACGATCCATTCCTTCAAGCAATTTTTCAAA
196 TTCTTTTATAACTTC-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
** * * * * * **
51167 CATTTGATGCTCGAGAAAACGCGTCATTTGCTCTAAATCGTTTGTCATTTTGTAAACAACATTTG
260 CATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTG
* * *
51232 GTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCG
325 GTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCG
* * * * * *
51297 ATCTTATCAAACTTTTACGAGTTCTTTTAAAACTTCGGATCA
390 AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * *
51339 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTGTTCGAATATTCCATGCTCGTGAAAT-A
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
* * * * *
51403 GCATCATTTGGTCTAAATAGTTTGTCTTTTTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTA
66 -CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTA
* * * * *
51468 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTCCAATCTTGTCCAACTTTT-CAA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* ** * *
51532 GTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGATCCATTTATTCCAGCAATTTTTTGA
195 GTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * * * *
51597 ACATTCCATGCTCGGGCAATCACATTATTTGGTTTAAATAGTTTGTCGTTTTGTAAAAAAACTTT
259 ACATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAGTTT
* * * * *
51662 TGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACTTT
323 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTC
* * * *
51727 CGAAATGGTCAAACTTTTATGAGTTCTTCTATAACTTTGGTTCC
388 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * * *
51771 TTAAAGTATTAAAGACCATCCATTTCTGCCAGCAATTTTTCGAGCATTCCATGCGT-GGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGGGAAATC
* * * *
51835 GCATCATTTTGGTATAAATAATTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTT
65 ACATCA-TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTT
**
51900 ATTTACGTGAGAATTATTTCTCTCTTCATTCTTGGACGAAC-TTCGATCTTGTCAAACTTTTACG
129 ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACG
* * * *
51964 AGTTCTTTTATAACTTTGACTCCTTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCA
194 AGTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * * * *
52029 AATATTCCATTGC-CGTGAAATCTCGTTATTTGGTCTAAATAGATTGTCATATTT-TAAA-ATGT
258 AACATTCCA-TGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCAT-TTTGTAAACAAGT
** * * * *
52091 TTTGGTCTTTGGTTTAAAGACTGATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAAC
321 TTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAAC
* * * * ** **
52155 TTTCGGACTTGTAAAACTTTTACAAGTTCTTTTATAAC-TTCCTTTG
385 TTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
* * * * *
52201 TTAAACT-TTCAAGATGATCCATTCC-TCTGAGAAATTTTTCGAGCATTCCATGCTCGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * *
52264 ACATCGTTCGGTATCAATAGTTTGTCATTTTATAAACAACTTTTGGTCTTTGAATTAAAATCTTA
65 ACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTA
* *
52329 TTTACGTGAGAATTATTTATCTCTTAGTTCTTGGACGAAC-TTCGATCTTGTCAAACTTTTACGA
130 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGA
* *
52393 GTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATTCATTCCTTCGATCAATTTTTCGA
195 GTTCTTTTATAACTTCG-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
52458 A
259 A
52459 TTTTTAAATG
Statistics
Matches: 10208, Mismatches: 1671, Indels: 728
0.81 0.13 0.06
Matches are distributed among these distances:
383 14 0.00
384 4 0.00
385 14 0.00
386 7 0.00
387 10 0.00
388 12 0.00
389 13 0.00
390 27 0.00
391 37 0.00
392 23 0.00
393 36 0.00
394 20 0.00
395 2 0.00
397 1 0.00
398 6 0.00
401 3 0.00
402 4 0.00
403 1 0.00
404 3 0.00
405 5 0.00
406 2 0.00
408 1 0.00
409 1 0.00
410 1 0.00
412 1 0.00
413 1 0.00
414 32 0.00
415 166 0.02
416 13 0.00
417 274 0.03
418 210 0.02
419 22 0.00
420 14 0.00
421 114 0.01
422 33 0.00
423 126 0.01
424 58 0.01
425 99 0.01
426 92 0.01
427 120 0.01
428 915 0.09
429 1014 0.10
430 1350 0.13
431 2243 0.22
432 1285 0.13
433 1285 0.13
434 317 0.03
435 172 0.02
436 5 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (431 bp):
TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA
CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTAT
TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTGTCAAACTTTTACGAG
TTCTTTTATAACTTCGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAAC
ATTCCATGCTCGAGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAGTTTTGG
TCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACTTCCGA
ACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
Found at i:51059 original size:215 final size:216
Alignment explanation
Indices: 50371--52458 Score: 2320
Period size: 214 Copynumber: 9.7 Consensus size: 216
50361 AATCGCATCA
*
50371 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATT-TTCTCTCTCTTGGTTCTTCGACGAAC
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATT-TCTCTCTTGGTTCTTGGACGAAC
* * * *
50435 TTTCGAACTTGTTAAACTTTTACGGGTTCTTTTATAACTTCTGTTCGTTAAAGTA-T-AAGATGA
65 TTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGA
* * * * * *
50498 TTCATTCCTTCAAGCCATTTTTCAAACATTCGATGCTCGAGAAATCGCATCATTTGGTCTAAATC
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATA
* * * *
50563 GTTTGTTATTTGGTAAATAACA
195 GTTTGTCATTTTGTAAACAACT
* * *
50585 TTTGGTCTTTGAATTAATATCTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC-
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* *
50649 ATCGAACTCGTCAAACTTTTACGAGTT-TTTTAATAACTT-TGGTTCCTTAAAGTATT-ATAGAC
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTT-ATAACTTCT-GTTCCTTAAAGTATTCA-AGAC
* * * * * * *
50711 AAT-TATTCCTTCGATCAA-TTTTCTGAATATTCCATTCCCGTGAAATCGCATCATTTGGTCTAA
128 GATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAA
*
50774 ATAGATTGTCATATTT-TAAA-AA-T
192 ATAGTTTGTCAT-TTTGTAAACAACT
* * * * *
50797 GTATTGGTCTTTGGATTGAAGA-CTCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACG
1 -T-TTGGTCTTTGAATT-AAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACG
* * * *
50860 AACTTCCGAACTTGTAAAACTTTTACAAGTTCTTTTATAACTTCT-TTCGTTAAAGTATTCAAGA
62 AACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGA
* * * * * * * *
50924 TGATCCATTCCTTTGAGAAATTTTCCGAACATTCCATGCTCGGGAAAACACATCATTTGGTATAA
127 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAA
*
50989 GTAGTTTGTCATTTTGTAAACAACT
192 ATAGTTTGTCATTTTGTAAACAACT
* * * * * *
51014 TTTGGTGTTTGAATTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTAGACAAACT
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* * * * **
51079 TTCGAACTTGTCCAACTTTTACGGGTTCTTTTGTAACATCTGTTGGTTAAAGTA-T-AAGACGAT
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGAT
* * ** * * * *
51142 CCATTCCTTCAAGCAATTTTTCAAACATTTGATGCTCGAGAAAACGCGTCATTTGCTCTAAATCG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
*
51207 TTTGTCATTTTGTAAACAACA
196 TTTGTCATTTTGTAAACAACT
*
51228 TTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
51293 TTCGATCTTATCAAACTTTTACGAGTTCTTTTAAAACTTCGGATCATTAAAGTATTCAAGACGAT
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGAT
* * * * *
51358 CCATTCCTTCGATCAATTGTTCGAATATTCCATGCTCGTGAAATAGCATCATTTGGTCTAAATAG
131 CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
* * *
51423 TTTGTCTTTTTTTAAACAAGT
196 TTTGTCATTTTGTAAACAACT
* * *
51444 TTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* * * *
51508 TTCCAATCTTGTCCAACTTTT-CAAGTTCTTTTATAACTTC-GATTCATTAAAGTATTCAAGACG
66 TTCGAA-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACG
** * * * * * * *
51571 ATCCATTTATTCCAGCAATTTTTTGAACATTCCATGCTCGGGCAATCACATTATTTGGTTTAAAT
129 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAAT
* *
51636 AGTTTGTCGTTTTGTAAAAAAACT
194 AGTTTGTCATTTTGT-AAACAACT
* * *
51660 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAACT
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* * * * * *
51725 TTCGAAATGGTCAAACTTTTATGAGTTCTTCTATAACTT-TGGTTCCTTAAAGTATTAAAGACCA
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCT-GTTCCTTAAAGTATTCAAGACGA
* * * * * *
51789 TCCATTTCTGCCAGCAATTTTTCGAGCATTCCATGCGT-GGGAAATCGCATCATTTTGGTATAAA
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGAGAAATCGCATCA-TTTGGTCTAAA
* *
51853 TAATTTGTCATTTTGTAAACAACA
193 TAGTTTGTCATTTTGTAAACAACT
**
51877 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTCATTCTTGGACGAAC-
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
* *
51941 TTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGACTCCTTAAAGTATTCAAGACGA
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGA
* * * * * * *
52005 TCCATTCCTTCGATCAATTTTTCAAATATTCCATTGC-CGTGAAATCTCGTTATTTGGTCTAAAT
130 TCCATTCCTTCGAGCAATTTTTCGAACATTCCA-TGCTCGAGAAATCGCATCATTTGGTCTAAAT
* **
52069 AGATTGTCATATTT-TAAA-ATGT
194 AGTTTGTCAT-TTTGTAAACAACT
** * * *
52091 TTTGGTCTTTGGTTTAAAGA-CTGATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAA
1 TTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGAA
* * * * * *
52154 CTTTCGGACTTGTAAAACTTTTACAAGTTCTTTTATAACTTCCT-TT-GTTAAACT-TTCAAGAT
64 CTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-CTGTTCCTTAAAGTATTCAAGAC
* * * * * * *
52216 GATCCATTCC-TCTGAGAAATTTTTCGAGCATTCCATGCTCGAGAAATCACATCGTTCGGTATCA
128 GATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAA
*
52280 ATAGTTTGTCATTTTATAAACAACT
192 ATAGTTTGTCATTTTGTAAACAACT
* *
52305 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTTAGTTCTTGGACGAAC-
1 TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
*
52369 TTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACGA
66 TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTG-TTCCTTAAAGTATTCAAGACGA
* *
52433 TTCATTCCTTCGATCAATTTTTCGAA
130 TCCATTCCTTCGAGCAATTTTTCGAA
52459 TTTTTAAATG
Statistics
Matches: 1566, Mismatches: 254, Indels: 107
0.81 0.13 0.06
Matches are distributed among these distances:
212 14 0.01
213 155 0.10
214 494 0.32
215 381 0.24
216 344 0.22
217 152 0.10
218 26 0.02
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
TTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAACT
TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCTGTTCCTTAAAGTATTCAAGACGAT
CCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCTAAATAG
TTTGTCATTTTGTAAACAACT
Found at i:52586 original size:165 final size:165
Alignment explanation
Indices: 52304--52603 Score: 403
Period size: 165 Copynumber: 1.8 Consensus size: 165
52294 TATAAACAAC
*
52304 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTTAGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTCATTTACGTGAGAATTATTTATCTCTTAGTTCTTGGACGAAC
* * * * *
52369 TTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGAT
66 TTCGAACCTGTAAAACTTTTACAAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGAT
*
52434 TCATTCCTTCGATCAATTTTTCGAATTTTTAAATG
131 CCATTCCTTCGATCAATTTTTCGAATTTTTAAATG
* * *
52469 TTTTGGTCTTTGGATTAAAGA-CTCATTTA-TTGGAGAATTATTTCTCTCTT-GATTCTAT-GAC
1 TTTTGGTCTTTGAATTAAA-ATCTCATTTACGT-GAGAATTATTTATCTCTTAG-TTCT-TGGAC
* *
52530 GAACTTCCGAACCTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCATTAAAGTTTTCAAG
62 GAACTT-CGAACCTGTAAAACTTTTACAAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAG
*
52594 ATGATCCATT
126 ACGATCCATT
52604 TCATTGTGAA
Statistics
Matches: 117, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
164 2 0.02
165 79 0.68
166 36 0.31
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (165 bp):
TTTTGGTCTTTGAATTAAAATCTCATTTACGTGAGAATTATTTATCTCTTAGTTCTTGGACGAAC
TTCGAACCTGTAAAACTTTTACAAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGAT
CCATTCCTTCGATCAATTTTTCGAATTTTTAAATG
Found at i:52914 original size:216 final size:214
Alignment explanation
Indices: 52469--53222 Score: 849
Period size: 216 Copynumber: 3.5 Consensus size: 214
52459 TTTTTAAATG
* * * * * *
52469 TTTTGGTCTTTGGATTAAAGACTCATTTA-TTGGAGAATTATTTCTCTCTTGATTCTAT-GACGA
1 TTTTGGTGTTTGAATTAAA-ACTTATTTACGT-GAGAATTGTTTCTCTCTTGGTTCT-TGGACGA
* * * **
52532 ACTTCCGAACCTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTC-ATTAAAGTTTTCAAGA
63 ACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGATTCTA-TAAAGTAATCAAGA
* * * * * * *
52595 TGATCCATTTCATTGTGAAATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTATAA
127 TGATCCA-TTCCTTGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCAATTGGTCTAA
*
52660 ATAGTTTGTCATTTCGTAAACAAC
191 ATAGTTTGTCATTTTGTAAACAAC
* * * * * * *
52684 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAAC
1 TTTTGGTGTTTGAATTAAAA-CTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
52749 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCTATAAAGTAATGAAGACGA
65 TTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGATTCTATAAAGTAATCAAGATGA
* * * * *
52814 TGCATTCCTTCGAGCAATTTTCTGAGCATTTCATGCTCGGGAAATCAAATCAATTGGCCTAAATA
130 TCCATTCCTT-GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCAATTGGTCTAAATA
52879 GTTTGTCATTTTGTAAACAAC
194 GTTTGTCATTTTGTAAACAAC
* *
52900 TTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTGTTTGAATT-AAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
52965 TTTCGAACTTGTAAAACTTTTACGGGTTCTTTCATAACCTCGATTCCT-TAAAGTAGTCAAGATG
65 TTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGATT-CTATAAAGTAATCAAGATG
* * **
53029 ATCCATTCCTTGGAGCAATTTTTTGAACATTCCACGCTCGAAAAATCACATC-ATTCGGTCTAAA
129 ATCCATTCCTT-GAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCAATT-GGTCTAAA
*
53093 TAGTTTGTCATTTTGTGAAA-AAG
192 TAGTTTGTCATTTTGT-AAACAAC
* * *
53116 TTTTGGTGTTTAAATCGAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTGTTTGAAT-TAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
53181 TTTC-AATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
65 TTCCGAA-CTTGTAAAACTTTTACGAGTTCTTTTATAACTTCG
53223 GTTCATTAAA
Statistics
Matches: 458, Mismatches: 69, Indels: 23
0.83 0.13 0.04
Matches are distributed among these distances:
214 2 0.00
215 98 0.21
216 348 0.76
217 10 0.02
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
TTTTGGTGTTTGAATTAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACT
TCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGATTCTATAAAGTAATCAAGATGAT
CCATTCCTTGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCACATCAATTGGTCTAAATAGT
TTGTCATTTTGTAAACAAC
Found at i:53534 original size:333 final size:335
Alignment explanation
Indices: 52900--53565 Score: 815
Period size: 333 Copynumber: 2.0 Consensus size: 335
52890 TGTAAACAAC
* * * * * *
52900 TTTTGGTGTTTGAATTAAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAAACTGATTTACGTGAGAATTATTTCTCTCTTGATTCTTGGACGAAC
**
52965 TTTCGAACTTGTAAAACTTTTACGGGTTCTTTCATAACCTCGATTCCTTAAAGTAGTCAAGATGA
66 TTTCGAACTTGTAAAACTTTTACAAGTTCTTTCATAACCTCGATTCCTTAAAGTAGTCAAGATGA
** *
53030 TCCATTCCTTGGAGCAATTTTTTGAACATTCCACGCTCGAAAAATCACATCATTCGGTCTAAATA
131 TCCATTCCTTGGAAAAATTTTTCGAACATTCCACGCTCGAAAAATCACATCATTCGGTCTAAATA
* * * * * * *
53095 GTTTGTCATTTTGTGAAAAAGTTTTGGTGTTTAAATCGAAAACTTATTTACGTGGGAATTGTTTC
196 GTTTGTAATTTTATGAAAAACTTTTGGTCTTTAAATCGAAAACTTATTTACATGAGAATTATTTC
* * * * *
53160 TCTCTTGGTTCTTGGACGAACTTTCAATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
261 TCACATGGTTCTTGGACAAACTTTCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAT
53225 TCATTAAATG
326 TCATTAAATG
** * *
53235 TTTTGGTCTTTGGTTTAAAGACTGATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAA
1 TTTTGGTCTTTGAATTAAAAACTGATTTACGTGAGAATTATTTCTCTCTTGATTCT-TGGACGAA
* * * * * *
53299 CTTTCGGACTTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCGTTAAAGT-TTCAAGATG
65 CTTTCGAACTTGTAAAACTTTTACAAGTTCTTTCATAACCTCGATTCCTTAAAGTAGTCAAGATG
* * ** * *
53362 ATCCATTCCTCT-GAAAAATTTTTCGAGCATTCCATGCTCGGGAAATCACATCGTTTGG-CATAA
130 ATCCATTCCT-TGGAAAAATTTTTCGAACATTCCACGCTCGAAAAATCACATCATTCGGTC-TAA
* *
53425 ATAGTTTGTAATTTTAT-AAACAACTTTTGGTCTTTGAAT-TAAAATCTTATTTACATGAGAATT
193 ATAGTTTGTAATTTTATGAAA-AACTTTTGGTCTTTAAATCGAAAA-CTTATTTACATGAGAATT
* * ** *
53488 ATTTGTCACATGGTTTTTGGACAAACTTTTGATCTTGTCGAACTTTTACGAGTTCTTTTATAACT
256 ATTTCTCACATGGTTCTTGGACAAACTTTCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACT
*
53553 TCGATTCCTTAAA
321 TCGATTCATTAAA
53566 GTAATGAAGA
Statistics
Matches: 279, Mismatches: 47, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
332 8 0.03
333 170 0.61
334 11 0.04
335 89 0.32
336 1 0.00
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.42
Consensus pattern (335 bp):
TTTTGGTCTTTGAATTAAAAACTGATTTACGTGAGAATTATTTCTCTCTTGATTCTTGGACGAAC
TTTCGAACTTGTAAAACTTTTACAAGTTCTTTCATAACCTCGATTCCTTAAAGTAGTCAAGATGA
TCCATTCCTTGGAAAAATTTTTCGAACATTCCACGCTCGAAAAATCACATCATTCGGTCTAAATA
GTTTGTAATTTTATGAAAAACTTTTGGTCTTTAAATCGAAAACTTATTTACATGAGAATTATTTC
TCACATGGTTCTTGGACAAACTTTCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGAT
TCATTAAATG
Found at i:53679 original size:216 final size:216
Alignment explanation
Indices: 53235--58975 Score: 3709
Period size: 216 Copynumber: 26.1 Consensus size: 216
53225 TCATTAAATG
** * * *
53235 TTTTGGTCTTTGGTTTAAAGA-CTGATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* * * * *
53298 ACTTTCGGA-CTTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCGTTAAAGT-TTCAAGA
64 AC-TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGA
* ** * *
53360 TGATCCATTCC-TCTGAAAAATTTTTCGAGCATTCCATGCTCGGGAAATCACATCGTTTGG-CAT
128 CGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC-T
* *
53423 AAATAGTTTGTAATTTTATAAACAAC
191 AAATAGTTTGTCATTTTGTAAACAAC
* * * * * *
53449 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTGTCACATGGTTTTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
** * * * *
53514 TTTTGATCTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTAATGAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
** *
53579 AGCATTCCTTCGAGCAA-TTTTCTGAACATTGCATGCTCGGGAAATCACATCATTTGGTCTAAAT
131 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
53643 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* * * * *
53665 ATTTGGTGTTTGAATTTAAAA-CTTATTTACGTGAGTATTGTTTCTCTCTTGGTTTTTGGACGAA
1 TTTTGGTCTTTGAA-TTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * * *
53729 CTTCCGAACTGGTCAAACTTTTACGGGATCTTTTATAACTTCTG-TTCGTTAAAGTA-T-AAGAC
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCATTAAAGTATTCAAGAC
* * ** * * *
53791 GAACCATTCCTTCAAGCAATTTTTCGAACATTTGATGCTCGAGAAATCGCATCATTTGCTCTAAA
129 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
* *
53856 TCGTTTGTCATTTTGTAAACAGC
194 TAGTTTGTCATTTTGTAAACAAC
* * * *
53879 ATTTGGTCTTTGAATTAAAATATTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
53944 TTCCGATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCGAATCATTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * *
54009 TCCATTCCTTCGATCAATTTTTTGAACATTCCATGCTCGGGAAATGACATCATTT-GTTTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* * *
54073 GTTTGTCGTTTTATAAAAAAAC
196 GTTTGTCATTTTGT-AAACAAC
* *
54095 TTTTGGTCTTTGAATTAAATTCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
54160 TTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * *
54224 TCCATTCATTCCAGCAATTTTTTGAACATTCCATGCTCCGGAAATCACATCATTT-GTTTAGATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
54288 GTTTGTCGTTTTGTAAAAAAAC
196 GTTTGTCATTTTGT-AAACAAC
* *
54310 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTCGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
54375 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATACCTTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * * * * *
54439 TCCATTCCTTCGATCAATTTTCCGAATATTCCATTCCCGTGAAATCGCAGCATTTAGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
54504 GATTGTCATATTT-TAAA-AATG
196 GTTTGTCAT-TTTGTAAACAA-C
* * * * *
54525 TTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACAA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* * * * * * *
54588 ACTTCCCAACTTGTAAAACTTTTACAAGTTTTTTTATAACTTC-CTTCATTAAAGTATTCAAGAT
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGAC
* * * * * *
54652 GGTCCATTCCTTTGTGAAATTTTTCGAACATTCCATGCTCAGGAAATCACATCATTTGGTATAAA
129 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
*
54717 TAGTTTGTCATTTTGTAAACAAG
194 TAGTTTGTCATTTTGTAAACAAC
* * * * * *
54740 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTATCACATGGTTTTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
54805 TTCCGATCTTGTCGAACTTTTACGAGTTCTTTTACAATTTCGATTCCTTAAAGTAATGAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * *
54870 TGCATTCCATCGAGCAATTTTTCAAACATTTCATGCTCGGGAAATCAAATCATTCGGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
*
54935 GTTTGTCATTTTGTGAAA-AAG
196 GTTTGTCATTTTGT-AAACAAC
* * * * * *
54956 TTTTGGTGTTTAAATCGAAAA-CTTATTTATGTG-GAAATTGTCTCTCTCTTGGTTCTTGGACGA
1 TTTTGGTCTTTGAAT-TAAAATCTTATTTACGTGAG-AATTATTTCTCTCTTGGTTCTTGGACGA
* * *
55019 ACTTCCGATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAATGT-TT--TG-
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAA-GTATTCAAGA
* ** ** * * * * ** * * *
55080 -G-T-CTTTGGTTTAAAGACTGATTTATGTGAGAATTATTTC-T-CTCTTGATTCTATGACGAAC
128 CGATCCATT-CCTTCGAG-C-AATTT-T-T-CGAA-CATTCCATGCTCGGGA---AATCAC-ATC
* * * *
55140 -TTTCGGACTTGTAAA-ACTTT-TACAAGTTCTT-T-TATAAC
182 ATTT-GG---TCTAAATAGTTTGT-C-A-TT-TTGTAAACAAC
* * * * ** **
55178 TTCCT--TCGTTAAAGTTTCAAGATGATC-CATTCCT-C-TGAGAAATT-TTT-TGAGCATTCCA
1 TT-TTGGTCTTTGAA--TT-AA-A--ATCTTATT--TACGTGAG-AATTATTTCT-CTC-TT-GG
* * * * * * *
55236 TGCTCGG--GAA-ATCAC-ATCGTTTAGT-ATAAATAGTTTGTC-A-TT-TTATAAACAACTTCT
53 TTCTTGGACGAACTTC-CGATC--TT-GTCA-AACT--TTT-ACGAGTTCTT-T-TATAACTTC-
* * ** * * * **
55293 TGTATTTGAATTAAAATCTTATTTACGTGA-GAAT-TATTTCTCTCTTG-GTTCTTGGATGAACT
107 -G-A-TT-CATT-AAA--GTA-TT-CAAGACG-ATCCA-TTC-CT-TCGAG--C---AAT--TTT
* * * * *** ** * * * *
55355 TCGATCTTGTCAATGTTTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTA-TTTAAGACGGT
152 TCGAACAT-TCCATG-CTCGGGAAATCA--CATCA-TTTG-GT-C-TAAA-TAGTTT------GT
* *
55419 GCATTCCTTCG--AGCAAT
202 -CATT--TT-GTAAACAAC
** * ** * * * * * *
55436 TTTTCGAACATTCCATGCTCGGGAAATCACATCATTT-GGTCTA-AA-TAGTTTGTC-ATT--TT
1 TTTT-GGTCTTTGAAT--T---AAAAT--C-TTATTTACGT-GAGAATTA-TTTCTCTCTTGGTT
* ** ** * * * * **
55495 -GTAAAC-AACTTTTGGTGTTTGAATTTAAAACTTATTTACGTGAGTAT-TGTTTCTCTCTT-G-
55 CTTGGACGAACTTCCGAT-CTTG----TCAAAC-T-TTTAC--GAGT-TCT-TTTATAACTTCGA
* * * * * * * * **
55555 GTCCTTGGACGAACTTC-CGAACTTG-TCAAACTT--TTACG-G-GATCTTTTATAAC-TT-C-T
109 TTCATT-AAAGTA-TTCAAG-AC--GATC-CA-TTCCTT-CGAGCAAT-TTTTCGAACATTCCAT
* ** * ** ** * * ** * *
55611 GTTCGTTAAAGT---ATAAGATGAAC-CATTCCTTCAAG-CAATTTT-TAGAAC-AT
165 GCTCGGGAAA-TCACATCATTTGGTCTAAATAGTT--TGTC-ATTTTGTA-AACAAC
* ** * *** ** * *
55661 TTTATGCTC-GAGAAATCGCATCATT-TGCTCTAAATCGTTTGTCATT-TTGTAAACAACAT-TT
1 TTT-TGGTCTTTGAATTAAAATC-TTAT--T-T--A-CGTGAG-AATTATT-T---C-TC-TCTT
* ** ** ** * * * * ** *
55722 GG-TCTTTGAATTAAAATCTTATTTATGTGAGAATTATTTCTCTCTTG-GTTCTTGGACGAACTT
51 GGTTC-TTGGACGAACTTCCGATCT-TGTCA-AA--CTTT-T-AC--GAGTTCTTTTA-TAAC-T
* * * * * * * ** * *
55785 TCGATCTTATCAAA-CATTTACGA-GTTCTTTTATAACTTCGGATC-ATTAAAGTATTCAAGACG
105 TCGAT-TCATTAAAGTATTCAAGACGATC---CATTCCTTC-GAGCAATT----T-TTCGA-AC-
* ** * * * * ** * * *
55847 A-TCCATTCCTTCGATCAATTTTTCAAATATTCCATTCTCGT-GAAATAG--CATCAGTTGGTCT
158 ATTCCA-TGC-TCG-GGAA---ATC--ACA-T-CATT-TGGTCTAAATAGTTTGTCATTTTGT-A
*
55908 AA-ATC
211 AACAAC
* ** *
55913 GTTT-GTCTTT-TTTTAAACAAGTTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTT
1 TTTTGGTCTTTGAATT-AA-AA-------TC-TT--A-T------TTA----CGTGAGAATTATT
* * * *
55976 TCTCCCTTGGTTCTTGGACGAACTTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCA
43 TCTCTCTTGGTTCTTGGACGAACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG
* * ** *
56040 ATTCATTAAAGTATTCAAGACGATCCATTCATTCCAGCAATTTTTTTAACATTCCATGCTCCGGA
108 ATTCATTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA
* * * *
56105 AATCACATCATTT-GTTTAGATAGTTTGTCGTTTTGTAAAAAAAC
173 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAC
* * * *
56149 TTTTGGTCTTTGAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * * *
56214 TTTCGAACTCGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTGAAGACCA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * * * *
56279 TCCATTTCTTCCAACAATTTTTCGAGCATTCCATGCACGAGAAATCGCATCATTTGGTCAAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
*
56344 GTTTGTCCTTTTGTAAACAAC
196 GTTTGTCATTTTGTAAACAAC
* * *
56365 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTCGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * *
56430 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * * * * *
56494 TCCATTCCTTCGATCAATATTTCGAATATTCCATTCCCGTGAAATCGCAGCATTTAGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
56559 GATTGTCATATTT-TAAA-AATG
196 GTTTGTCAT-TTTGTAAACAA-C
* * * * *
56580 TTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACAA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* ** * * * *
56643 ACTTCCGAACTCATAAAACTTTTACAAGTTCTTTTATAA-TT-TACTTCTTTAAAGTATTCAAGA
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCATTAAAGTATTCAAGA
* * * * * * * *
56706 TGGTCCATTCCTTTGTGAAATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTATAA
128 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAA
*
56771 ATAGTTTGTTATTTTGTAAACAAC
193 ATAGTTTGTCATTTTGTAAACAAC
* * * * *
56795 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * *
56860 TTCCAATCTTGTCGAACTTTTAAGAGTTCCTTTATAACTTTGATTCCTTAAAGTAATGAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * *
56925 TGCATTCCATCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCAAATCATTTGGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
56990 GTTTGTCATTTTGTAAACAAC
196 GTTTGTCATTTTGTAAACAAC
* * * * ** *
57011 TTTTGGTGTTTGAATTAAAAACTTATTAACGTGAGTATTGCTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
57076 TTCCGAACATGTCAAACTTTTACGGGTTCTATCATAACTTCGATTCCTTAAAGTATTCAAGATGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * ** *
57141 TCTATTCCTTCAAGCAATTTTTCGAGCATTCCATGCTCGAAAAATCACATCATTCGGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
*
57206 GTTTGTCATTTTGTGAAA-AAG
196 GTTTGTCATTTTGT-AAACAAC
* * * * * * * *
57227 TTTTGTTGTTTAAATCGAAAA-CTTATTTACGTGGGAATTGTCTCTCTCTAGGTTCTTGGACGAA
1 TTTTGGTCTTTGAAT-TAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * * *
57291 CTTCCGATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAATTGTTCAAGATG
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACG
* * * * * * * *
57356 ATCCATTCATTCGATCAATTTTTTGAGCATTCCATGCACGGGAAATCGCATCTTTTGGTCTAAGT
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
57421 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* **
57443 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTCATTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * *
57508 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTAATGACA-ATG
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCA-AGACG
** **
57571 AAGCATTCCTTCGAGCAATTTTTCGAACATTGTATGCTCGGGAAATCACATCATTTGGTCTAAAT
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
57636 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* ** * *
57658 TTTTGGTGTAGGAATTTAAAA-CTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAA
1 TTTTGGTCTTTGAA-TTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * *
57722 CTTCCGAACTTGTCAAACTTTTACGGGATCTTTTATAACTTCTG-TTCGTTAAAGTA-T-AAGAC
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCATTAAAGTATTCAAGAC
* * * ** * * *
57784 GAACCATTCCTTCAAGCAATTTTTCAAACATTTGATGCTCGAGAAATCGCATCATTTGCTCTAAA
129 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
*
57849 TCGTTTGTCATTTTGTAAACAAC
194 TAGTTTGTCATTTTGTAAACAAC
* * *
57872 ATTTGGCCTTTGAATTAATATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
*
57937 TTCCGATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCGGA-TCATTAAAGTATTCAAGACG
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCATTAAAGTATTCAAGACG
* * *
58001 ATCCATTCCTTCGATCAATTTTTCGAATATTCCATGCTCGTGAAAT-AGCATCATTTGGTCTAAA
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAA
* * *
58065 TAGTTTGTCTTTTTTTAAACAAG
194 TAGTTTGTCATTTTGTAAACAAC
* * * *
58088 TTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAA-CAGTTTCTCTCTTGGTTCTTGGTCGAA
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTA-TTTCTCTCTTGGTTCTTGGACGAA
* * *
58152 CTTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACA
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACG
* * * *
58216 ATCCATTCATTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTT-GTTTAAAT
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
* *
58280 AGTTTGTCGTTTTGTAAAAAAC
195 AGTTTGTCATTTTGTAAACAAC
* * * * * *
58302 TTTTGGTCTTCGAATTAAAATATTATTTACGTGATAATTGTTTCTCTCTTGGTTTTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * *
58367 TTTCGAACTGGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACCA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * * *
58432 TCCATTTCTTCTAGCAATTTTTCGAGCATTCCATGCACGGGAATTCGCATCATTTGGTCTAAAGA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
58497 GTTTGTCATTTTGTAAACAAC
196 GTTTGTCATTTTGTAAACAAC
* *
58518 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
58583 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATACCTTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * * * * *
58647 TCCATTCCTTCGATCAATTTTCCGAATATTCCATTCCCGTGAAATCGCAGCATTTAGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
58712 GATTGTCATATTT-TAAA-AATG
196 GTTTGTCAT-TTTGTAAACAA-C
* * * * *
58733 TTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAAATATTTCTCTCTTGATTCTAT-GACGA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* * * * * *
58796 ACTTCCGAACTTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCGTTAAAGT-TTCAAGAT
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGAC
* * * * * *
58859 GATCCATTCC-TCTGAGAAATTTTCCGAGCATTTCATGCTCGGGAAATCACATCGTTTGGTATAA
129 GATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAA
*
58923 ATAGTTTGTCATTTTATAAACAAC
193 ATAGTTTGTCATTTTGTAAACAAC
58947 TTTTGGTCTTTGAATTAAAATCTTATTTA
1 TTTTGGTCTTTGAATTAAAATCTTATTTA
Statistics
Matches: 4320, Mismatches: 886, Indels: 642
0.74 0.15 0.11
Matches are distributed among these distances:
210 3 0.00
211 4 0.00
212 2 0.00
213 29 0.01
214 663 0.15
215 1472 0.34
216 1547 0.36
217 58 0.01
218 6 0.00
219 10 0.00
220 1 0.00
221 12 0.00
222 12 0.00
223 11 0.00
224 6 0.00
225 16 0.00
226 18 0.00
227 15 0.00
228 17 0.00
229 10 0.00
230 20 0.00
231 9 0.00
232 21 0.00
233 21 0.00
234 10 0.00
235 14 0.00
236 13 0.00
237 14 0.00
238 7 0.00
239 4 0.00
240 1 0.00
241 6 0.00
242 7 0.00
243 5 0.00
244 10 0.00
245 8 0.00
246 9 0.00
247 7 0.00
248 6 0.00
249 8 0.00
250 17 0.00
251 18 0.00
252 22 0.01
253 13 0.00
254 12 0.00
255 4 0.00
256 10 0.00
257 12 0.00
258 12 0.00
259 7 0.00
260 17 0.00
261 10 0.00
262 22 0.01
263 14 0.00
264 4 0.00
265 1 0.00
266 5 0.00
267 8 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
GTTTGTCATTTTGTAAACAAC
Found at i:54244 original size:215 final size:216
Alignment explanation
Indices: 53235--55072 Score: 2118
Period size: 215 Copynumber: 8.5 Consensus size: 216
53225 TCATTAAATG
** * * *
53235 TTTTGGTCTTTGGTTTAAAGA-CTGATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* * * * *
53298 ACTTTCGGA-CTTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCGTTAAAGT-TTCAAGA
64 AC-TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGA
* ** * *
53360 TGATCCATTCC-TCTGAAAAATTTTTCGAGCATTCCATGCTCGGGAAATCACATCGTTTGG-CAT
128 CGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTC-T
* * *
53423 AAATAGTTTGTAATTTTATAAACAAC
191 AAATAGTTTGTCATTTTGTAAAAAAC
* * * * * *
53449 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTGTCACATGGTTTTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
** * * * *
53514 TTTTGATCTTGTCGAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTAATGAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
** *
53579 AGCATTCCTTCGAGCAA-TTTTCTGAACATTGCATGCTCGGGAAATCACATCATTTGGTCTAAAT
131 TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
*
53643 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAAAAAC
* * * * *
53665 ATTTGGTGTTTGAATTTAAAA-CTTATTTACGTGAGTATTGTTTCTCTCTTGGTTTTTGGACGAA
1 TTTTGGTCTTTGAA-TTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * * *
53729 CTTCCGAACTGGTCAAACTTTTACGGGATCTTTTATAACTTCTG-TTCGTTAAAGTA-T-AAGAC
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCATTAAAGTATTCAAGAC
* * ** * * *
53791 GAACCATTCCTTCAAGCAATTTTTCGAACATTTGATGCTCGAGAAATCGCATCATTTGCTCTAAA
129 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
* * *
53856 TCGTTTGTCATTTTGTAAACAGC
194 TAGTTTGTCATTTTGTAAAAAAC
* * * *
53879 ATTTGGTCTTTGAATTAAAATATTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
53944 TTCCGATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCGAATCATTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * *
54009 TCCATTCCTTCGATCAATTTTTTGAACATTCCATGCTCGGGAAATGACATCATTT-GTTTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
54073 GTTTGTCGTTTTATAAAAAAAC
196 GTTTGTCATTTTGT-AAAAAAC
* *
54095 TTTTGGTCTTTGAATTAAATTCTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
54160 TTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * *
54224 TCCATTCATTCCAGCAATTTTTTGAACATTCCATGCTCCGGAAATCACATCATTT-GTTTAGATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
*
54288 GTTTGTCGTTTTGTAAAAAAAC
196 GTTTGTCATTTTGT-AAAAAAC
* *
54310 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTCGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
54375 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATACCTTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * * * * *
54439 TCCATTCCTTCGATCAATTTTCCGAATATTCCATTCCCGTGAAATCGCAGCATTTAGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* **
54504 GATTGTCATATTT-TAAAAATG
196 GTTTGTCAT-TTTGTAAAAAAC
* * * * *
54525 TTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACAA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* * * * * * *
54588 ACTTCCCAACTTGTAAAACTTTTACAAGTTTTTTTATAACTTC-CTTCATTAAAGTATTCAAGAT
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGAC
* * * * * *
54652 GGTCCATTCCTTTGTGAAATTTTTCGAACATTCCATGCTCAGGAAATCACATCATTTGGTATAAA
129 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
* *
54717 TAGTTTGTCATTTTGTAAACAAG
194 TAGTTTGTCATTTTGTAAAAAAC
* * * * * *
54740 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTATCACATGGTTTTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
54805 TTCCGATCTTGTCGAACTTTTACGAGTTCTTTTACAATTTCGATTCCTTAAAGTAATGAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * *
54870 TGCATTCCATCGAGCAATTTTTCAAACATTTCATGCTCGGGAAATCAAATCATTCGGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
54935 GTTTGTCATTTTGTGAAAAAG
196 GTTTGTCATTTTGTAAAAAAC
* * * * * *
54956 TTTTGGTGTTTAAATCGAAAA-CTTATTTATGTG-GAAATTGTCTCTCTCTTGGTTCTTGGACGA
1 TTTTGGTCTTTGAAT-TAAAATCTTATTTACGTGAG-AATTATTTCTCTCTTGGTTCTTGGACGA
* *
55019 ACTTCCGATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAA
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAA
55073 TGTTTTGGTC
Statistics
Matches: 1379, Mismatches: 217, Indels: 54
0.84 0.13 0.03
Matches are distributed among these distances:
213 13 0.01
214 277 0.20
215 538 0.39
216 534 0.39
217 17 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
GTTTGTCATTTTGTAAAAAAC
Found at i:55483 original size:215 final size:216
Alignment explanation
Indices: 55075--58975 Score: 4551
Period size: 216 Copynumber: 18.1 Consensus size: 216
55065 TCATTAAATG
** * * *
55075 TTTTGGTCTTTGGTTTAAAGA-CTGATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* * * * *
55138 ACTTTCGGA-CTTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCGTTAAAGT-TTCAAGA
64 AC-TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGA
* * * * * * *
55200 TGATCCATTCC-TCTGAGAAATTTTTTGAGCATTCCATGCTCGGGAAATCACATCGTTTAGTATA
128 CGATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTA
*
55264 AATAGTTTGTCATTTTATAAACAAC
192 AATAGTTTGTCATTTTGTAAACAAC
* *
55289 TTCTT-GTATTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGATGAA
1 TT-TTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
** * *
55353 CTT-CGATCTTGTCAATGTTTTACGAGTTCATTTATAACTTCGATTCCTTAAAGTATTTAAGACG
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* *
55417 GTGCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
55482 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* * * *
55504 TTTTGGTGTTTGAATTTAAAA-CTTATTTACGTGAGTATTGTTTCTCTCTTGGTCCTTGGACGAA
1 TTTTGGTCTTTGAA-TTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * * *
55568 CTTCCGAACTTGTCAAACTTTTACGGGATCTTTTATAACTTCTG-TTCGTTAAAGTA-T-AAGAT
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGAC
* * * ** * * *
55630 GAACCATTCCTTCAAGCAATTTTTAGAACATTTTATGCTCGAGAAATCGCATCATTTGCTCTAAA
129 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
*
55695 TCGTTTGTCATTTTGTAAACAAC
194 TAGTTTGTCATTTTGTAAACAAC
* *
55718 ATTTGGTCTTTGAATTAAAATCTTATTTATGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * *
55783 TTTCGATCTTATCAAACATTTACGAGTTCTTTTATAACTTCGGA-TCATTAAAGTATTCAAGACG
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACG
* * * * * *
55847 ATCCATTCCTTCGATCAATTTTTCAAATATTCCATTCTCGTGAAAT-AGCATCAGTTGGTCTAAA
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAA
* * * *
55911 TCGTTTGTCTTTTTTTAAACAAG
194 TAGTTTGTCATTTTGTAAACAAC
* * * *
55934 TTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * *
55999 TTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * ** * * *
56063 TCCATTCATTCCAGCAATTTTTTTAACATTCCATGCTCCGGAAATCACATCATTT-GTTTAGATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
56127 GTTTGTCGTTTTGTAAAAAAAC
196 GTTTGTCATTTTGT-AAACAAC
* * * *
56149 TTTTGGTCTTTGAATTAAAATCTTATTTATGTGAGAATTGTTTCTCTCTTGGTTTTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * * *
56214 TTTCGAACTCGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTGAAGACCA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * * * * *
56279 TCCATTTCTTCCAACAATTTTTCGAGCATTCCATGCACGAGAAATCGCATCATTTGGTCAAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
*
56344 GTTTGTCCTTTTGTAAACAAC
196 GTTTGTCATTTTGTAAACAAC
* * *
56365 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTCGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
56430 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * * * * * *
56494 TCCATTCCTTCGATCAATATTTCGAATATTCCATTCCCGTGAAATCGCAGCATTTAGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
56559 GATTGTCATATTT-TAAA-AATG
196 GTTTGTCAT-TTTGTAAACAA-C
* * * * *
56580 TTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACAA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* ** * * * *
56643 ACTTCCGAACTCATAAAACTTTTACAAGTTCTTTTATAA-TT-TACTTCTTTAAAGTATTCAAGA
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGA-TTCCTTAAAGTATTCAAGA
* * * * * * * *
56706 TGGTCCATTCCTTTGTGAAATTTTCCGAACATTCCATGCTCAGGAAATCACATCATTTGGTATAA
128 CGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAA
*
56771 ATAGTTTGTTATTTTGTAAACAAC
193 ATAGTTTGTCATTTTGTAAACAAC
* * * * *
56795 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
56860 TTCCAATCTTGTCGAACTTTTAAGAGTTCCTTTATAACTTTGATTCCTTAAAGTAATGAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * *
56925 TGCATTCCATCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCAAATCATTTGGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
56990 GTTTGTCATTTTGTAAACAAC
196 GTTTGTCATTTTGTAAACAAC
* * * * ** *
57011 TTTTGGTGTTTGAATTAAAAACTTATTAACGTGAGTATTGCTTCTCTCTTGGTTCTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
57076 TTCCGAACATGTCAAACTTTTACGGGTTCTATCATAACTTCGATTCCTTAAAGTATTCAAGATGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * ** *
57141 TCTATTCCTTCAAGCAATTTTTCGAGCATTCCATGCTCGAAAAATCACATCATTCGGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
*
57206 GTTTGTCATTTTGTGAAA-AAG
196 GTTTGTCATTTTGT-AAACAAC
* * * * * * * *
57227 TTTTGTTGTTTAAATCGAAAA-CTTATTTACGTGGGAATTGTCTCTCTCTAGGTTCTTGGACGAA
1 TTTTGGTCTTTGAAT-TAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * * * *
57291 CTTCCGATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAATTGTTCAAGATG
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * * * * * * *
57356 ATCCATTCATTCGATCAATTTTTTGAGCATTCCATGCACGGGAAATCGCATCTTTTGGTCTAAGT
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
57421 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* **
57443 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTCATTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * *
57508 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTAATGACA-ATG
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCA-AGACG
** **
57571 AAGCATTCCTTCGAGCAATTTTTCGAACATTGTATGCTCGGGAAATCACATCATTTGGTCTAAAT
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
57636 AGTTTGTCATTTTGTAAACAAC
195 AGTTTGTCATTTTGTAAACAAC
* ** * *
57658 TTTTGGTGTAGGAATTTAAAA-CTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAA
1 TTTTGGTCTTTGAA-TTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAA
* * * *
57722 CTTCCGAACTTGTCAAACTTTTACGGGATCTTTTATAACTTCTG-TTCGTTAAAGTA-T-AAGAC
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGAC
* * * ** * * *
57784 GAACCATTCCTTCAAGCAATTTTTCAAACATTTGATGCTCGAGAAATCGCATCATTTGCTCTAAA
129 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAA
*
57849 TCGTTTGTCATTTTGTAAACAAC
194 TAGTTTGTCATTTTGTAAACAAC
* * *
57872 ATTTGGCCTTTGAATTAATATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* *
57937 TTCCGATCTTATCAAACTTTTACGAGTTCTTTTATAACTTCGGA-TCATTAAAGTATTCAAGACG
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAGACG
* * *
58001 ATCCATTCCTTCGATCAATTTTTCGAATATTCCATGCTCGTGAAAT-AGCATCATTTGGTCTAAA
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAA
* * *
58065 TAGTTTGTCTTTTTTTAAACAAG
194 TAGTTTGTCATTTTGTAAACAAC
* * * *
58088 TTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAA-CAGTTTCTCTCTTGGTTCTTGGTCGAA
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTA-TTTCTCTCTTGGTTCTTGGACGAA
* * * *
58152 CTTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACA
65 CTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACG
* * * *
58216 ATCCATTCATTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTT-GTTTAAAT
130 ATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAAT
* *
58280 AGTTTGTCGTTTTGTAAAAAAC
195 AGTTTGTCATTTTGTAAACAAC
* * * * * *
58302 TTTTGGTCTTCGAATTAAAATATTATTTACGTGATAATTGTTTCTCTCTTGGTTTTTGGATGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
58367 TTTCGAACTGGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACCA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * * * *
58432 TCCATTTCTTCTAGCAATTTTTCGAGCATTCCATGCACGGGAATTCGCATCATTTGGTCTAAAGA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
58497 GTTTGTCATTTTGTAAACAAC
196 GTTTGTCATTTTGTAAACAAC
* *
58518 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
*
58583 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATACCTTAAAGTATTCAAGACGA
66 TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
* * * * * * * * *
58647 TCCATTCCTTCGATCAATTTTCCGAATATTCCATTCCCGTGAAATCGCAGCATTTAGTCTAAATA
131 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
* *
58712 GATTGTCATATTT-TAAA-AATG
196 GTTTGTCAT-TTTGTAAACAA-C
* * * * *
58733 TTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAAATATTTCTCTCTTGATTCTAT-GACGA
1 TTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCT-TGGACGA
* * * * * *
58796 ACTTCCGAACTTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCGTTAAAGT-TTCAAGAT
64 ACTTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGAC
* * * * * *
58859 GATCCATTCC-TCTGAGAAATTTTCCGAGCATTTCATGCTCGGGAAATCACATCGTTTGGTATAA
129 GATCCATTCCTTC-GAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAA
*
58923 ATAGTTTGTCATTTTATAAACAAC
193 ATAGTTTGTCATTTTGTAAACAAC
58947 TTTTGGTCTTTGAATTAAAATCTTATTTA
1 TTTTGGTCTTTGAATTAAAATCTTATTTA
Statistics
Matches: 3119, Mismatches: 506, Indels: 124
0.83 0.13 0.03
Matches are distributed among these distances:
212 2 0.00
213 51 0.02
214 643 0.21
215 1184 0.38
216 1210 0.39
217 29 0.01
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
TTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGACGAAC
TTCCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGA
TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATA
GTTTGTCATTTTGTAAACAAC
Found at i:56299 original size:431 final size:432
Alignment explanation
Indices: 55075--58975 Score: 4442
Period size: 431 Copynumber: 9.1 Consensus size: 432
55065 TCATTAAATG
** * * * * *
55075 TTTTGGTCTTTGGTTTAAAGACTGATTTATGTGAGAATTATTTCTCTCTTGATTCTAT-GACGAA
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGGACGAA
** * * * * *
55139 CTTTCGGA-CTTGTAAAACTTTTACAAGTTCTTTTATAACTTC-CTTCGTTAAAGT-TTCAAGAT
65 C-TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGAC
* * * * * * * *
55201 GATCCATTC-CTCTGAGAAATTTTTTGAGCATTCCATGCTCGGGAAATCACATCGTTTAGTATAA
129 GATCCATTCATTC-GAGCAATTTTTCGAACATTCCATGCTCCGGAAATCGCATCATTTAGTCTAA
* *
55265 ATAGTTTGTCATTTTATAAACAACTTCTT-GTATTTGAATTAAAATCTTATTTACGTGAGAATTA
193 ATAGTTTGTCATTTTGTAAACAACTT-TTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTA
* * ** *
55329 TTTCTCTCTTGGTTCTTGGATGAAC-TTCGATCTTGTCAATGTTTTACGAGTTCATTTATAACTT
257 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * *
55393 CGATTCCTTAAAGTATTTAAGACGGTGCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGG
322 TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTTCGAACATTCCATGCTCGG
55458 GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
387 GAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * *
55504 TTTTGGTGTTTGAATTTAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTCCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
55569 TTCCGAA-CTTGTCAAACTTTTACGGGATCTTTTATAACTTCTG-TTCGTTAAAGTA-T-AAGAT
66 TTCC-AATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCATTAAAGTATTCAAGAC
* * * * **
55630 GAACCATTCCTTCAAGCAATTTTTAGAACATTTTATGCT-CGAGAAATCGCATCATTT-GCTCTA
129 GATCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCG-GAAATCGCATCATTTAG-TCTA
* * *
55693 AATCGTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTATTTATGTGAGAATTA
192 AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTA
* * *
55758 TTTCTCTCTTGGTTCTTGGACGAACTTTCGATCTTATCAAACATTTACGAGTTCTTTTATAACTT
257 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * * * *
55823 CGGATCATTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCAAATATTCCATTCTCGT
322 TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTTCGAACATTCCATGCTCGG
* * * * *
55888 GAAAT-AGCATCAGTTGGTCTAAATCGTTTGTCTTTTTTTAAACAAG
387 GAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* *
55934 TTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAATTGTTTCTCCCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* *
55999 TTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCAATTCATTAAAGTATTCAAGACGA
66 TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* ** * * *
56063 TCCATTCATTCCAGCAATTTTTTTAACATTCCATGCTCCGGAAATCACATCATTT-GTTTAGATA
131 TCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCGGAAATCGCATCATTTAGTCTAAATA
* * * *
56127 GTTTGTCGTTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAATCTTATTTATGTGAGAATTGTTT
196 GTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTT
* * * *
56192 CTCTCTTGGTTTTTGGATGAACTTTCGAACTCGTCAAACTTTTATGAGTTCTTTTATAACTTTGG
260 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * * * * *
56257 TTCCTTAAAGTATTGAAGACCATCCATTTCTTCCAACAATTTTTCGAGCATTCCATGCACGAGAA
325 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTTCGAACATTCCATGCTCGGGAA
* * *
56322 ATCGCATCATTTGGTCAAAATAGTTTGTCCTTTTGTAAACAAC
390 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * *
56365 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTCGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * *
56430 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAGATGA
66 TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * *
56494 TCCATTCCTTCGATCAATATTTCGAATATTCCATTC-CCGTGAAATCGCAGCATTTAGTCTAAAT
131 TCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCG-GAAATCGCATCATTTAGTCTAAAT
* * * * *
56558 AGATTGTCATATTT-TAAA-AATGTTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAATTA
195 AGTTTGTCAT-TTTGTAAACAA-CTTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTA
* * * ** * *
56620 TTTCTCTCTTGATTCTAT-GACAAACTTCCGAACTCATAAAACTTTTACAAGTTCTTTTATAA-T
257 TTTCTCTCTTGGTTCT-TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
** * * * * * *
56683 TTACTTCTTTAAAGTATTCAAGATGGTCCATTCCTTTGTGA-AATTTTCCGAACATTCCATGCTC
321 TTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCG-AACAATTTTTCGAACATTCCATGCTC
* * *
56747 AGGAAATCACATCATTTGGTATAAATAGTTTGTTATTTTGTAAACAAC
385 GGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * * * * *
56795 TTTTGGTCTTTGAATTAAAATCTTATTTACATGAGAATTATTTCTCACATGGTTTTTGGACAAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * * *
56860 TTCCAATCTTGTCGAACTTTTAAGAGTTCCTTTATAACTTTGATTCCTTAAAGTAATGAAGACGA
66 TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * ** *
56925 TGCATTCCA-TCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCAAATCATTTGGTCTAAAT
131 TCCATT-CATTCGAGCAATTTTTCGAACATTCCATGCTCCGGAAATCGCATCATTTAGTCTAAAT
* * * * **
56989 AGTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAATTAAAAACTTATTAACGTGAGTATTGCTT
195 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTT
* * * * * * * *
57054 CTCTCTTGGTTCTTGGATGAACTTCCGAACATGTCAAACTTTTACGGGTTCTATCATAACTTCGA
260 CTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * **
57119 TTCCTTAAAGTATTCAAGATGATCTATTCCTTC-AAGCAATTTTTCGAGCATTCCATGCTCGAAA
325 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAA-CAATTTTTCGAACATTCCATGCTCGGGA
* *
57183 AATCACATCATTCGGTCTAAATAGTTTGTCATTTTGTGAAA-AAG
389 AATCACATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAC
* * * ** * * *
57227 TTTTGTTGTTTAAATCGAAAACTTATTTACGTGGGAATTGTCTCTCTCTAGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * * * * *
57292 TTCCGATGTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCATTAAATTGTTCAAGATGA
66 TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * * * *
57357 TCCATTCATTCGATCAATTTTTTGAGCATTCCATGCACGGGAAATCGCATCTTTTGGTCTAAGTA
131 TCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCGGAAATCGCATCATTTAGTCTAAATA
*
57422 GTTTGTCATTTTGTAAACAACATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTC
196 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTC
** * *
57487 TCTCTTCATTCTTGGACGAAC-TTCGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGAT
261 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* * * ** * **
57551 TCCTTAAAGTAATGACA-ATGAAGCATTCCTTCGAGCAATTTTTCGAACATTGTATGCTCGGGAA
326 TCCTTAAAGTATTCA-AGACGATCCATTCCTTCGAACAATTTTTCGAACATTCCATGCTCGGGAA
57615 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
390 ATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* ** * *
57658 TTTTGGTGTAGGAATTTAAAACTTATTTACGTGAGTATTGTTTCTCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
57723 TTCCGAA-CTTGTCAAACTTTTACGGGATCTTTTATAACTTCTG-TTCGTTAAAGTA-T-AAGAC
66 TTCC-AATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GATTCATTAAAGTATTCAAGAC
* * * * **
57784 GAACCATTCCTTCAAGCAATTTTTCAAACATTTGATGCT-CGAGAAATCGCATCATTT-GCTCTA
129 GATCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCG-GAAATCGCATCATTTAG-TCTA
* * * *
57847 AATCGTTTGTCATTTTGTAAACAACATTTGGCCTTTGAATTAATATCTTATTTACGTGAGAATTA
192 AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTA
* * *
57912 TTTCTCTCTTGGTTCTTGGACGAACTTCCGATCTTATCAAACTTTTACGAGTTCTTTTATAACTT
257 TTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT
* * * * * *
57977 CGGATCATTAAAGTATTCAAGACGATCCATTCCTTCGATCAATTTTTCGAATATTCCATGCTCGT
322 TGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTTCGAACATTCCATGCTCGG
* * *
58042 GAAAT-AGCATCATTTGGTCTAAATAGTTTGTCTTTTTTTAAACAAG
387 GAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* ** *
58088 TTTTGGTCTTTGGATTAAAAACTTATTTACGTGAGAACAGTTTCTCTCTTGGTTCTTGGTCGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* *
58153 TTCCAATCTTGTCCAACTTTT-CGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACAA
66 TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * *
58217 TCCATTCATTCCAGCAATTTTTTGAACATTCCATGCTCGGGAAATCACATCATTT-GTTTAAATA
131 TCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCGGAAATCGCATCATTTAGTCTAAATA
* * * * * *
58281 GTTTGTCGTTTTGTAAAAAACTTTTGGTCTTCGAATTAAAATATTATTTACGTGATAATTGTTTC
196 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTC
* * * *
58346 TCTCTTGGTTTTTGGATGAACTTTCGAACTGGTCAAACTTTTATGAGTTCTTTTATAACTTTGGT
261 TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* * * * * * *
58411 TCCTTAAAGTATTCAAGACCATCCATTTCTTCTAGCAATTTTTCGAGCATTCCATGCACGGGAAT
326 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTTCGAACATTCCATGCTCGGGAAA
* *
58476 TCGCATCATTTGGTCTAAAGAGTTTGTCATTTTGTAAACAAC
391 TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
* * * *
58518 ATTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTATCTCTTGGTTCTTGGACGAAC
1 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
* * *
58583 TT-CGATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATACCTTAAAGTATTCAAGACGA
66 TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
* * * * * *
58647 TCCATTCCTTCGATCAATTTTCCGAATATTCCATTC-CCGTGAAATCGCAGCATTTAGTCTAAAT
131 TCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCG-GAAATCGCATCATTTAGTCTAAAT
* * * * * *
58711 AGATTGTCATATTT-TAAA-AATGTTTTGGTCTTTGGATTAAAGA-CTCATTTATGTGAGAAATA
195 AGTTTGTCAT-TTTGTAAACAA-CTTTTGGTCTTTGAATTAAA-ATCTTATTTACGTGAGAATTA
* * * *
58773 TTTCTCTCTTGATTCTAT-GACGAACTTCCGAACTTGTAAAACTTTTACAAGTTCTTTTATAAC-
257 TTTCTCTCTTGGTTCT-TGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
** * * * * *
58836 TTCCTTCGTTAAAGT-TTCAAGATGATCCATTCC-TCTGAGA-AATTTTCCGAGCATTTCATGCT
321 TTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTC-GA-ACAATTTTTCGAACATTCCATGCT
* * *
58898 CGGGAAATCACATCGTTTGGTATAAATAGTTTGTCATTTTATAAACAAC
384 CGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
*
58947 TTTTGGTCTTTGAATTAAAATCTTATTTA
1 TTTTGGTCTTTGAATTAAAAACTTATTTA
Statistics
Matches: 2930, Mismatches: 479, Indels: 126
0.83 0.14 0.04
Matches are distributed among these distances:
428 13 0.00
429 535 0.18
430 981 0.33
431 1042 0.36
432 353 0.12
433 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.41
Consensus pattern (432 bp):
TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC
TTCCAATCTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGATTCATTAAAGTATTCAAGACGA
TCCATTCATTCGAGCAATTTTTCGAACATTCCATGCTCCGGAAATCGCATCATTTAGTCTAAATA
GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAATCTTATTTACGTGAGAATTATTTC
TCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAACAATTTTTCGAACATTCCATGCTCGGGAAA
TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
Done.