Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014651.1 Kokia drynarioides strain JFW-HI SEQ_129690, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5543
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.33


Found at i:2937 original size:60 final size:60

Alignment explanation


    Indices: 2844--2965  Score: 244
    Period size: 60  Copynumber: 2.0  Consensus size: 60

       2834 TTCTGCTGTG

                                                                        
       2844 TCTCCTCTCCACAATGACAACAGCTCATCACCCTTCGGTAGCAACAAACACTACTAGTTT
          1 TCTCCTCTCCACAATGACAACAGCTCATCACCCTTCGGTAGCAACAAACACTACTAGTTT

                                                                        
       2904 TCTCCTCTCCACAATGACAACAGCTCATCACCCTTCGGTAGCAACAAACACTACTAGTTT
          1 TCTCCTCTCCACAATGACAACAGCTCATCACCCTTCGGTAGCAACAAACACTACTAGTTT

              
       2964 TC
          1 TC

       2966 AATGCCTTAA


Statistics
Matches: 62,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  60   62  1.00

ACGTcount: A:0.30, C:0.35, G:0.10, T:0.25


Consensus pattern (60 bp):   
TCTCCTCTCCACAATGACAACAGCTCATCACCCTTCGGTAGCAACAAACACTACTAGTTT

Found at i:5071 original size:17 final size:19

Alignment explanation


    Indices: 5041--5079  Score: 55
    Period size: 18  Copynumber: 2.2  Consensus size: 19

       5031 AAAATTCAAA

                  *            
       5041 TTTCACTTCAATTCT-ATT
          1 TTTCACATCAATTCTCATT

                               
       5059 TTTCACATC-ATTCTCATT
          1 TTTCACATCAATTCTCATT

               
       5077 TTT
          1 TTT

       5080 TTCCCATATC


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  17    5  0.26
  18   14  0.74

ACGTcount: A:0.21, C:0.23, G:0.00, T:0.56


Consensus pattern (19 bp):   
TTTCACATCAATTCTCATT
Done.