Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014652.1 Kokia drynarioides strain JFW-HI SEQ_129691, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2663
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36


Found at i:557 original size:19 final size:20

Alignment explanation


    Indices: 521--563  Score: 61
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        511 GGGCTAATTT

                     *          
        521 TTTTTAATATTTTAATATAA
          1 TTTTTAATAATTTAATATAA

                              * 
        541 TTTTTAATAATTT-ATATTA
          1 TTTTTAATAATTTAATATAA

                
        560 TTTT
          1 TTTT

        564 AAGTATATAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  19    9  0.43
  20   12  0.57

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (20 bp):   
TTTTTAATAATTTAATATAA
Done.