Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014658.1 Kokia drynarioides strain JFW-HI SEQ_129697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 241069
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Warning! 30 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:203422 original size:12 final size:12
Alignment explanation
Indices: 203407--203431 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
203397 CGAATGACGA
203407 TGAAAATCCAGT
1 TGAAAATCCAGT
203419 TGAAAATCCAGT
1 TGAAAATCCAGT
203431 T
1 T
203432 ACACATATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TGAAAATCCAGT
Found at i:215770 original size:16 final size:16
Alignment explanation
Indices: 215749--215797 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
215739 AGATGGAGAT
215749 ATTATTTTGGTAATTA
1 ATTATTTTGGTAATTA
*
215765 ATTATTTT-TTATATT-
1 ATTATTTTGGTA-ATTA
*
215780 A-TATTTTGGTAACTA
1 ATTATTTTGGTAATTA
215795 ATT
1 ATT
215798 TAGAGTAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
14 8 0.31
15 6 0.23
16 12 0.46
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (16 bp):
ATTATTTTGGTAATTA
Found at i:215955 original size:11 final size:11
Alignment explanation
Indices: 215921--215952 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
215911 TATTAGTTTT
215921 TTATAAATTTA
1 TTATAAATTTA
215932 TTATAAATTTA
1 TTATAAATTTA
215943 TTATATAATT
1 TTATA-AATT
215953 ATTTTTACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
TTATAAATTTA
Found at i:216149 original size:21 final size:21
Alignment explanation
Indices: 216125--216165 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
216115 TTACTTACTA
216125 TTACTAACAAAATAAAATTAT
1 TTACTAACAAAATAAAATTAT
*
216146 TTACTAACAAAATTAAATTA
1 TTACTAACAAAATAAAATTA
216166 AAGTAAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (21 bp):
TTACTAACAAAATAAAATTAT
Found at i:216505 original size:4 final size:4
Alignment explanation
Indices: 216496--216543 Score: 60
Period size: 4 Copynumber: 11.5 Consensus size: 4
216486 TCTCTCCTTA
* *
216496 TTCT TTCT TTCT TTCTT TTCT TTCT CTCTT TTCT TTCT TTTT TTCT TT
1 TTCT TTCT TTCT TTC-T TTCT TTCT TTC-T TTCT TTCT TTCT TTCT TT
216544 GTTATGCCGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 31 0.82
5 7 0.18
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:216517 original size:13 final size:13
Alignment explanation
Indices: 216499--216543 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
216489 CTCCTTATTC
216499 TTTCTTTCTTTCT
1 TTTCTTTCTTTCT
*
216512 TTTCTTTCTCTCT
1 TTTCTTTCTTTCT
216525 TTTCTTTCTTT-T
1 TTTCTTTCTTTCT
216537 TTTCTTT
1 TTTCTTT
216544 GTTATGCCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 8 0.27
13 22 0.73
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTCTTTCTTTCT
Found at i:216518 original size:17 final size:17
Alignment explanation
Indices: 216496--216543 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
216486 TCTCTCCTTA
216496 TTCTTTCTTTCTTTCTT
1 TTCTTTCTTTCTTTCTT
*
216513 TTCTTTCTCTCTTT-TCT
1 TTCTTTCTTTCTTTCT-T
*
216530 TTCTTTTTTTCTTT
1 TTCTTTCTTTCTTT
216544 GTTATGCCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 1 0.04
17 26 0.96
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TTCTTTCTTTCTTTCTT
Found at i:218349 original size:24 final size:25
Alignment explanation
Indices: 218312--218360 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
218302 TTTGATAATA
** *
218312 TAAAATAAGTGATATATA-ATGTTT
1 TAAAATAAAAGATAAATACATGTTT
218336 TAAAATAAAAGATAAATACATGTTT
1 TAAAATAAAAGATAAATACATGTTT
218361 ATGGAGATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (25 bp):
TAAAATAAAAGATAAATACATGTTT
Found at i:218835 original size:17 final size:17
Alignment explanation
Indices: 218813--218846 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
218803 ACACACGATT
218813 GTATAAACACCCCCAAA
1 GTATAAACACCCCCAAA
218830 GTATAAACACCCCCAAA
1 GTATAAACACCCCCAAA
218847 CTCTTTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.35, G:0.06, T:0.12
Consensus pattern (17 bp):
GTATAAACACCCCCAAA
Found at i:221022 original size:14 final size:14
Alignment explanation
Indices: 221003--221031 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
220993 AAGAACTCAA
221003 ACTTGACACAAAAG
1 ACTTGACACAAAAG
221017 ACTTGACACAAAAG
1 ACTTGACACAAAAG
221031 A
1 A
221032 GGATTAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.14
Consensus pattern (14 bp):
ACTTGACACAAAAG
Found at i:221775 original size:600 final size:594
Alignment explanation
Indices: 219103--222611 Score: 3515
Period size: 600 Copynumber: 6.0 Consensus size: 594
219093 TCAGACTCTT
* * *
219103 TATGTTGCAATGCAATTACTCTCAATTTATTTATATGGATATTTTGGAAACATATAGAAACTTGA
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGAATATTCTGGAAACATATAGAAACTTGA
* * ** * * * *
219168 CACTTTTATTGT-A---T-AAATTCAT-TAAACAAATTTTTTAAATAATTTTTTTATGTATAAAT
66 CACTTTTATTGTGAGCGTCAATTTCTTCTTGA-GATTTTTTTAAACAATTTTTTTATGTATAAAG
* * *
219227 TCATTAAAGAACTCAAACTTGACACAAAAGA--TG--------TAAGA--AAA--TAA---TTTA
130 TCATTAAAGAACTCAAACTTGATACAAAAGACTTGACACAAAAGAAGATCAAAGGAAAGGGTTTA
* * * * * * *
219275 TAT-TGAAAGTGAGGATGAAAACAGGGATTGAAGCCCTTAAAGGAAATACACAAAATTTTAGAAG
195 TATCT-AAAGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACAATATTGTATAAG
* * ** *
219339 CACCCCTAAACTCATTTTTTTATTTTG-TTTCCCCCTTTTTTCACTCAGCG-TGTATCTGAAACT
259 CACCCC-AAACTC-TTTTTATGTTTTGTTTTCCCTTTTTTTTCACTCGGCGCT-TATCTGAAACT
* *
219402 TGAATTGTGGTGAAATTTAACAATGCAAAACACA-TGATATATAATGTTCAAAAATAAAAGAGAA
321 TGAATTGTGGTGAAATTTGACAATACAAAACA-AGTGATATATAATGTTCAAAAATAAAAGAGAA
** ** *
219466 ATACATGTTTTTCTAGATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGG
385 ACGCATGTTTTTGGAGATATTTAAGTGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGG
* * * *
219531 AAACAATAGACAAATAAGGTAGGAAGCAAGTATCATGGTTGGCCTCTAATCAATTGGTTACTCTG
450 AAACAACAGACAAATATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAACCAATTGGATACTCTG
* * * * *
219596 CATTTTTAGACTCTTTAAATTGATCCGCCGTGATTTTGTCTTCACTTCTCTTTTTATTTATTTCC
515 CATTTTTAGACTCTTTAAATTGGTCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTATTT-T
219661 CCCCTCAATATTGCTA
579 CCCCTCAATATTGCTA
* * * *
219677 TAAGTTGCAATGCAATTACTCTTTATTTATTTATATGGATATTTTGGAAACATATAGAAACTTGA
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGAATATTCTGGAAACATATAGAAACTTGA
* * *
219742 CACTTTTATTGTGAGCTATCAATTTCTTCTTGAGA-TTTTTGAAACAATTTTTTTATGTATAAAT
66 CACTTTTATTGTGAGC-GTCAATTTCTTCTTGAGATTTTTTTAAACAATTTTTTTATGTATAAAG
* * *
219806 TTATTAAAGAACTCAAACTTGATACCAAAGACTTGACAAAAAAGAAGATCAAAGGAAAGGGTTTA
130 TCATTAAAGAACTCAAACTTGATACAAAAGACTTGACACAAAAGAAGATCAAAGGAAAGGGTTTA
* * * **
219871 TATCTAAAGTGAGGATTAAAATAGGGAGTTAAGCCTTTAAGGGAAATAGACACCATTGTATAAGC
195 TATCTAAAGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACAATATTGTATAAGC
* * * ** * * * * *
219936 ACCCCAAACACTTTTTGTGTTTTGTTTCCCCGCTTCTTTCACTTGACGCGTATATGAAACTTGAA
260 ACCCCAAACTCTTTTTATGTTTTGTTTTCCCTTTTTTTTCACTCGGCGCTTATCTGAAACTTGAA
** * * * * * * *
220001 TAATGGCGAAATTTTACAA-AGAAAAACAAGTAATATATAAAGTTAAAAAAATAAAAGAGAATCG
325 TTGTGGTGAAATTTGACAATA-CAAAACAAGTGATATATAATGTT-CAAAAATAAAAGAGAAACG
* *
220065 CATGTTTTTGGAGATATTTAAGTGAACTTTCCAATGGAAGATTAGAGTCATAATTACAACGGAAA
388 CATGTTTTTGGAGATATTTAAGTGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAA
* * * * *
220130 CAACATACGAATATGGTAGGAAGCAAGAATCATGGTTGGCCTCAAACCAATTGGATACTCTGCTT
453 CAACAGACAAATATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAACCAATTGGATACTCTGCAT
* * **
220195 TTTTAGACTCTTTAAA-TGGACCAACCTTGATTTTGTCTTCACCTCTCAATTTATTTATTTTGCC
518 TTTTAGACTCTTTAAATTGG-TCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTATTTT-CC
* *
220259 CCTCAGTATAGCTA
581 CCTCAATATTGCTA
* * *
220273 TATGTTGGAATGCAATTACTTTCTATTTATTTATATGGATATTCTGGAAACATATAGAAACTTGG
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGAATATTCTGGAAACATATAGAAACTT-G
* * * * *
220338 A-ACTTTTATTGTGAGTCGTCATTTTTTTCCCT-AGATTTTTTAAAACAATATTTTTATGTATAA
65 ACACTTTTATTGTGAG-CGTCAATTTCTT-CTTGAGATTTTTTTAAACAATTTTTTTATGTATAA
* *
220401 AGTCATTGAAGAACTCAAACTTG--AC-----AC---A-A-AATA-AA-ATCAAA-G-AAGAGGT
128 AGTCATTAAAGAACTCAAACTTGATACAAAAGACTTGACACAAAAGAAGATCAAAGGAAAG-GGT
* ** * * ** **
220450 TTATATCGAAAGTGATAATGAAAATAGGGAGTGAAGTCTTTAAGAAAAATAGACACGATTGTATA
192 TTATATCTAAAGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACAATATTGTATA
* * **
220515 AACACCCCAAACTATTTTTATGTTTTG-TTTCCCTTCTTTTTT-ACTCGATG-TCTATCTGAAAC
257 AGCACCCCAAACTCTTTTTATGTTTTGTTTTCCCTT-TTTTTTCACTCGGCGCT-TATCTGAAAC
* * *
220577 TTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTAATATATAATGTTCAAAAATAAAAGACAA
320 TTGAATTGTGGTGAAATTTGACAATACAAAACAAGTGATATATAATGTTCAAAAATAAAAGAGAA
* * * *
220642 ATGCATGTTTATGGAAATATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGG
385 ACGCATGTTTTTGGAGATATTTAAGTGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGG
* * **
220707 AAACAACAAACAAAAATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAATAAATTGGATACTCTG
450 AAACAACAGACAAATATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAACCAATTGGATACTCTG
* * * * *
220772 CATTTTTAGACTCTTTAAATGGGTTATCCTTGATTTTTTTTCTTCACGTCTCTTTTTATTTATTC
515 CATTTTTAGACTCTTTAAATTGGTCAGCCTTGA--TTTTGTCTTCACCTCTCTTTTTATTTATT-
** *
220837 CCCCCCCTCAATATTGTTA
577 -TTCCCCTCAATATTGCTA
220856 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGAATATTCTGGAAACATATAGAAACTTGA
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATATGAATATTCTGGAAACATATAGAAACTTGA
* * *
220921 CATTTTTACTGTGAGCCTTCAATTTCTTCTTGAGATTTTTTTAAACAAATTTTTTTATGTATAAA
66 CACTTTTATTGTGAG-CGTCAATTTCTTCTTGAGATTTTTTTAAAC-AATTTTTTTATGTATAAA
* * * * *
220986 TTCATTAAAGAACTCAAACTTGACACAAAAGACTTGACACAAAAGAGGATTAAAGAAAAGGGTTT
129 GTCATTAAAGAACTCAAACTTGATACAAAAGACTTGACACAAAAGAAGATCAAAGGAAAGGGTTT
* * * *
221051 ATATCAAAAGTAAGGATAAAAACAGAGAGTGAAGCCTTTAAGGGAAATAGAC-ATGATTGTATAA
194 ATATCTAAAGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACAAT-ATTGTATAA
* * * * * *
221115 GCACCCCAAACTCTTTTTACGTTTTATTTCCCCCCTTTTTCTTCACTCAGCGCGTATCTGAAACT
258 GCACCCCAAACTCTTTTTATGTTTTGTTT--TCCCTTTTTTTTCACTCGGCGCTTATCTGAAACT
* * *
221180 TGAATTGTGGTGAAATTTGACAATACAAAACAAGTGATATATAAAGTTTAAAAATAAAAGAGAAG
321 TGAATTGTGGTGAAATTTGACAATACAAAACAAGTGATATATAATGTTCAAAAATAAAAGAGAAA
* * * * * * *
221245 CACATGTTTCTGGTGATATTTAAGTGTAGTTTACAAT-ATAAGATTAGAGTCATAGTTACAATGG
386 CGCATGTTTTTGGAGATATTTAAGTGAACTTTCCAATGA-AAGATTAGAGTCATAATTACAATGG
* * *
221309 AAACGACAGACAAATATGGTAAGAAGCAGGTATCATGGTTGGCCTCTAACCAATTGGATACTCTG
450 AAACAACAGACAAATATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAACCAATTGGATACTCTG
* * * * **
221374 TATTTTAAGACTCTTTATATTAGTCAGCCGCGATTTTGTCTTCACCTCTCTTTTTATTTATTTTC
515 CATTTTTAGACTCTTTAAATTGGTCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTATTTTC
* * *
221439 CTTCTCAGTTTTGCTA
580 C-CCTCAATATTGCTA
* * * * * *
221455 TAAGTAT-CAATGCAACTACTTTTTATTTATTTATATGAATATTCTCGAAACATATAGATACTTG
1 TATGT-TGCAATGCAATTACTCTCTATTTATTTATATGAATATTCTGGAAACATATAGAAACTTG
* * * *
221519 ACACTTTTACTATGAGCAGTCAGTTTCTTCTTGAGATTTTTTTTAAACAAATTTTTTTATGAATA
65 ACACTTTTATTGTGAGC-GTCAATTTCTTCTTGAGA-TTTTTTTAAAC-AATTTTTTTATGTATA
* *
221584 AAGTCACTAAAGAACTCAAACTTGATATAAAAGACTTGACACAAAAGAAGATCAAAGGAAAGGGT
127 AAGTCATTAAAGAACTCAAACTTGATACAAAAGACTTGACACAAAAGAAGATCAAAGGAAAGGGT
* * * *
221649 TTATATCTAAAGTGAGGATTAAAACAAGGAGTGAAACCTTTAAGGGAAATAGACAATTTTGTATA
192 TTATATCTAAAGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACAATATTGTATA
* *
221714 AGCACCCTCAAACTCTTTTTATGTTTTGTTTTTCCCTTTTTTTTCATTTGGCGCTTATCTGAAAC
257 AGCACCC-CAAACTCTTTTTATGTTTTG-TTTTCCCTTTTTTTTCACTCGGCGCTTATCTGAAAC
* * * *
221779 ATGAATTATGGTGAAATTTGACAATACAAAAAAAGTGATATATAATGTTCAAAAATAAAAGAGAT
320 TTGAATTGTGGTGAAATTTGACAATACAAAACAAGTGATATATAATGTTCAAAAATAAAAGAGAA
* * * ** * * *
221844 ACGCATTTTTTTGGAGTTATTTAAGTGAAGTTTCCAATGAACTATAAGAGTGATAATGACAATGG
385 ACGCATGTTTTTGGAGATATTTAAGTGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGG
* ** * * *
221909 AAACAATAGACAAATATGGTAGGAAGCTGGTATCACGGTTGGCCTCTAACCAATTGGGTACTTTG
450 AAACAACAGACAAATATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAACCAATTGGATACTCTG
* * * * * * * *
221974 AATTTTCAAACTCTTTAAATGGGCCAGCCTCGATTTTGTTTTCACCCCTCTTTTTATTTATTTTT
515 CATTTTTAGACTCTTTAAATTGGTCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTA-TTTT
222039 ACCCCTCAATATTGCTA
579 -CCCCTCAATATTGCTA
*
222056 TATGTTTCAATGCAATTACTCTCTATTTATTTATATAGACAT-TT-TGGAAACATATAGAAACTT
1 TATGTTGCAATGCAATTACTCTCTATTTATTTATAT-GA-ATATTCTGGAAACATATAGAAACTT
* * *
222119 GACACTTTTATTGTGAATCGTCAGTTTCTTCTTGAGATTTTTATAAACAATTTTTTTATGTATAA
64 GACACTTTTATTGTG-AGCGTCAATTTCTTCTTGAGATTTTTTTAAACAATTTTTTTATGTATAA
* * * *
222184 ATTC-TATAAAG-------ACTTG-------A-ACTTGACACAAAAGAAAATCGAAGAAAAGGGT
128 AGTCAT-TAAAGAACTCAAACTTGATACAAAAGACTTGACACAAAAGAAGATCAAAGGAAAGGGT
** * * * * * ***
222233 TTATATGGAATGTGAGAATGAAAACAGAGAGTGAAGCATTTAAAGGAAATAGACGGGATTGTATA
192 TTATATCTAAAGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACAATATTGTATA
* * * ** * * * *
222298 AACACCCCAAAACTCTTTTTTTTTTCTTTTTGTTTTGTTTCCCCCATTTATTCACTTGATC-CAT
257 AGCACCCC-AAACTC--------TT-TTTATGTTTTGTTTTCCCTTTTTTTTCACTCG-GCGCTT
*
222362 ATCTGAAACTTGAATTGTGGTGAAA-TT-----T---------G-G-----CAA--TTCAAAAAT
311 ATCTGAAACTTGAATTGTGGTGAAATTTGACAATACAAAACAAGTGATATATAATGTTCAAAAAT
* *
222404 AAAAGAGAAACACATGTTTTTGGAGATATTTAAGTGAACTTTCCAATAAAAGATTAGAGTCATAA
376 AAAAGAGAAACGCATGTTTTTGGAGATATTTAAGTGAACTTTCCAATGAAAGATTAGAGTCATAA
* * * * *
222469 TTACAATGGAAACAACAGATAAATATAGTAGGGAGCATA-TATCATGGTTGGTCACTAA-CAGAT
441 TTACAATGGAAACAACAGACAAATATGGTAGGAAGCA-AGTATCATGGTTGGCCTCTAACCA-AT
* * * * * * * *
222532 TGGATACTCTACATTTTCAGACTCCTTAAATGGGCCAACCTCGATTTTGTCTTCACCTCTCTATT
504 TGGATACTCTGCATTTTTAGACTCTTTAAATTGGTCAGCCTTGATTTTGTCTTCACCTCTCTTTT
*
222597 TATTTATTTCCCCCT
569 TATTTATTTTCCCCT
222612 TCAACTCTAT
Statistics
Matches: 2463, Mismatches: 373, Indels: 205
0.81 0.12 0.07
Matches are distributed among these distances:
567 5 0.00
568 5 0.00
569 174 0.07
571 2 0.00
574 74 0.03
575 1 0.00
576 1 0.00
577 1 0.00
579 56 0.02
580 162 0.07
581 70 0.03
582 117 0.05
583 114 0.05
584 131 0.05
585 4 0.00
586 4 0.00
587 1 0.00
589 4 0.00
590 2 0.00
591 7 0.00
592 48 0.02
593 13 0.01
594 13 0.01
595 74 0.03
596 341 0.14
597 52 0.02
598 8 0.00
599 198 0.08
600 434 0.18
601 120 0.05
602 225 0.09
603 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.35
Consensus pattern (594 bp):
TATGTTGCAATGCAATTACTCTCTATTTATTTATATGAATATTCTGGAAACATATAGAAACTTGA
CACTTTTATTGTGAGCGTCAATTTCTTCTTGAGATTTTTTTAAACAATTTTTTTATGTATAAAGT
CATTAAAGAACTCAAACTTGATACAAAAGACTTGACACAAAAGAAGATCAAAGGAAAGGGTTTAT
ATCTAAAGTGAGGATGAAAACAGGGAGTGAAGCCTTTAAGGGAAATAGACAATATTGTATAAGCA
CCCCAAACTCTTTTTATGTTTTGTTTTCCCTTTTTTTTCACTCGGCGCTTATCTGAAACTTGAAT
TGTGGTGAAATTTGACAATACAAAACAAGTGATATATAATGTTCAAAAATAAAAGAGAAACGCAT
GTTTTTGGAGATATTTAAGTGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAA
CAGACAAATATGGTAGGAAGCAAGTATCATGGTTGGCCTCTAACCAATTGGATACTCTGCATTTT
TAGACTCTTTAAATTGGTCAGCCTTGATTTTGTCTTCACCTCTCTTTTTATTTATTTTCCCCTCA
ATATTGCTA
Found at i:226611 original size:379 final size:376
Alignment explanation
Indices: 225900--227007 Score: 1359
Period size: 379 Copynumber: 2.9 Consensus size: 376
225890 AAGAATGTAA
* ** * * *
225900 ACTTGACACAAAAGAAGATCAAAGAAAAGGGTTTATATCAAAAGTG-AGGATGAAAATAGGGAGT
1 ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTAT-AAAATAGGGAGC
* * * * **
225964 GAAGCCTTTAAGGGAAATATACACGATTGT-TTAGCACCCCAAACTCGTTTTATGTTTCGTTTGC
65 GAAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCCCAAACTCGTTTTATGTTTTGTTCCC
** *
226028 CCTCTTTTTTCACTCGATGCATATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAA
130 CCT-TTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAA
* * * * * *
226093 GTGATAAATAATGTTTATAGATAAAAGAGAAACACATGTTTCTGGAGATATTTAAGCGAACTTTC
194 GTGATAAATAATGTTAAAAAATAAAAGAGAAACACATGTTTTTGGTGATATTTAAGCAAACTTTC
* * ** *
226158 CGTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATAGTACAAAACAATTATC
259 AGTTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATAT-GTAGGAAACAAGTATC
* * *
226223 TTCGTTGGCCTCTAACCAATTGGATATTCTGTATTTTCAGACATGACACAAAAT
323 TTGGTTGGCCTCTAACCAATTGGATACTCTGCATTTTCAGACATGACACAAAAT
* *
226277 ACTTGAAACAAAACAAGATCAAAGAAAACAATTTATATCGAAAGTGAAGTATAAAATAGGGAGCG
1 ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTATAAAATAGGGAGCG
* * *
226342 AAGCCTTTTAGGGAAATAGACATGATTGTATAAGCACAACCAAACTCTTTTTATGTTTTGCTTCC
66 AAGCCTTTAAGGGAAATAGACATGATTGTATAAGCAC-CCCAAACTCGTTTTATGTTTTG-TTCC
* * * *
226407 CCCTTTTTTTCACTCGGCGCGTATATGATAGTTTAATTGTGGTGAAATTTGACAATGCAAAACAA
129 CCCTTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAA
226472 GTGATAAATAAAT-TTAAAAAATAAAAGAGAAACACATGTTTTTGGTGATATTTAAGCAAACTTT
194 GTGATAAAT-AATGTTAAAAAATAAAAGAGAAACACATGTTTTTGGTGATATTTAAGCAAACTTT
** * * * * *
226536 GTGTTGAAAGATTAGAGTCATAATTATAATGGAAATAATAGACAAATATGCTAGGGAGCACGTAT
258 CAGTTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATG-TAGGAAACAAGTAT
* *
226601 CTTGGTTGGCCTCAAACCAATTGGATACTCTGCATTTTCAGACTTGACACAAAAT
322 CTTGGTTGGCCTCTAACCAATTGGATACTCTGCATTTTCAGACATGACACAAAAT
* * * *
226656 ACTTGAAACAAAAGATGATCAAAGAAAATAGTTTATATCGAAAGTGAGGCT-GAAAATAGGGAGC
1 ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAG-TATAAAATAGGGAGC
* * *
226720 GAAACCTTTAAGAGAAATAGACATGATTGTATAAGAACCCCCAAACTCGTTTTATGTTTTGTTTC
65 GAAGCCTTTAAGGGAAATAGACATGATTGTATAAGCA-CCCCAAACTCGTTTTATGTTTTG-TTC
* * * *
226785 CCCC-ATTTTTCACTCAGCGCGTATCTGAAACTTGAATTGTGGTGAAAGTTGACAACGCAAAACA
128 CCCCTTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACA
* * * * *
226849 AGTGGTATATAATGTTAAAAAATAAAAG-GAAAAACTAATGTTTTTGAAT-ATATTTAAGTGAAA
193 AGTGATAAATAATGTTAAAAAATAAAAGAGAAACAC--ATGTTTTTG-GTGATATTTAAG-CAAA
* * * * * *
226912 TTTTCAATCG-AAGATTATAGTCATAATTACAATGGAAACCATAGACAAATATGGTAGGAAACAT
254 CTTTCAGTTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATAT-GTAGGAAACAA
* * * **
226976 GAATCATGGTTCGCCTCTAAGAAATTGGATAC
318 GTATCTTGGTTGGCCTCTAACCAATTGGATAC
227008 AATCTATTTT
Statistics
Matches: 627, Mismatches: 90, Indels: 26
0.84 0.12 0.03
Matches are distributed among these distances:
377 87 0.14
378 85 0.14
379 434 0.69
380 21 0.03
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (376 bp):
ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTATAAAATAGGGAGCG
AAGCCTTTAAGGGAAATAGACATGATTGTATAAGCACCCCAAACTCGTTTTATGTTTTGTTCCCC
CTTTTTTTCACTCGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGT
GATAAATAATGTTAAAAAATAAAAGAGAAACACATGTTTTTGGTGATATTTAAGCAAACTTTCAG
TTGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGTAGGAAACAAGTATCTTG
GTTGGCCTCTAACCAATTGGATACTCTGCATTTTCAGACATGACACAAAAT
Found at i:227970 original size:378 final size:383
Alignment explanation
Indices: 227247--227975 Score: 868
Period size: 378 Copynumber: 1.9 Consensus size: 383
227237 GACACAAAAT
* * *
227247 ATCAAAGAAAAGGGTTTATATCAAAAGTGAGGATGAAAACAAGGAATGAAGCCTTTAAGGGAAAT
1 ATCAAAGAAAAGAGTTTATATCAAAAGTGAGGATGAAAACAAGGAACGAAGCCTTTAAGGGAAAC
* * *
227312 AAACACGATTGTATAAGTATCCCTAAACTCTTTTTATGTTTTGTTTCTCCCCGCACCTTTATTCA
66 AAACACGATTGTATAAGTATCCCCAAACTCTTTCTATG-TTTGTTTCTCCCCACACCTTTATTCA
** * * * *
227377 CTCGACGCATATTTGAACTTGAATTATTGTGAAATTTGACAATGAAAAATAAGTGATAAATAATG
130 CTCGACGCATATAGGAACTTGAATTATGGTGAAAGTAGACAATGAAAAACAAGTGATAAATAATG
* * ** ** **
227442 TTAAAAAATAAAAGAGAAACACATTTTTTTGTGATATTTAAGCGAACATTCCAATGAAATATTTT
195 TTAAAAAATAAAACAAAAACACAAGTTTTTGAAATATTTAAGCGAACATTCCAATGAAATAGATT
* * ** * *
227507 AAAGTCGTAATTACAGTGGAAACAACTGACAAATATGGTAGGAAGCAGTTATCTTGGTTGGCCTC
260 AAAGTCATAATTACAGTGGAAACAAATGACAAATACAGCAGGAAGCAGTTATCATGGTTGGCCTC
* *
227572 AAACCAATTTGATTCTCTGCATTTTCAGACGTGACACAAAATAGTTGAAATAGAAGAAG
325 AAACCAATTGGATACTCTGCATTTTCAGACGTGACACAAAATAGTTGAAATAGAAGAAG
* * * *
227631 ATCAAAGAAAATAGTTTATAT-AAAGAGTGAGGATGAGAACAGGGAGCGAAGCCTTTAAGGGAAA
1 ATCAAAGAAAAGAGTTTATATCAAA-AGTGAGGATGAAAACAAGGAACGAAGCCTTTAAGGGAAA
* * *
227695 CAAACATGATTGTATAAG-CTCCCCAAACTCTTTCTATG-TT-TTTCT-TCCAC-CCTTTATTCA
65 CAAACACGATTGTATAAGTATCCCCAAACTCTTTCTATGTTTGTTTCTCCCCACACCTTTATTCA
** * * * * * *
227755 CTCGGTGCGTATAGGAATCTTGAATTGTGGTGAAAGTAGACAATGCAACACAAGTGGTATATAAT
130 CTCGACGCATATAGGAA-CTTGAATTATGGTGAAAGTAGACAATGAAAAACAAGTGATAAATAAT
* *
227820 GTTCAAAAATAAAACAAAAACTA-AAGTTTTTGAAAATATTTAAGCGAACTTTCCAAT-AAA-AG
194 GTTAAAAAATAAAACAAAAAC-ACAAGTTTTTG-AAATATTTAAGCGAACATTCCAATGAAATAG
* * *
227882 ATTAGAGTCATTATTACAGTGGAAA-AAATAGACAAATACAGCAGGGAGCAAG-TATCATGGTTG
257 ATTAAAGTCATAATTACAGTGGAAACAAAT-GACAAATACAGCAGGAAGC-AGTTATCATGGTTG
**
227945 GCCTTTAACCAATTGGATACTCTGCATTTTC
320 GCCTCAAACCAATTGGATACTCTGCATTTTC
227976 GGACTCTTTA
Statistics
Matches: 289, Mismatches: 50, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
377 3 0.01
378 96 0.33
379 71 0.25
380 27 0.09
381 2 0.01
383 20 0.07
384 70 0.24
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.29
Consensus pattern (383 bp):
ATCAAAGAAAAGAGTTTATATCAAAAGTGAGGATGAAAACAAGGAACGAAGCCTTTAAGGGAAAC
AAACACGATTGTATAAGTATCCCCAAACTCTTTCTATGTTTGTTTCTCCCCACACCTTTATTCAC
TCGACGCATATAGGAACTTGAATTATGGTGAAAGTAGACAATGAAAAACAAGTGATAAATAATGT
TAAAAAATAAAACAAAAACACAAGTTTTTGAAATATTTAAGCGAACATTCCAATGAAATAGATTA
AAGTCATAATTACAGTGGAAACAAATGACAAATACAGCAGGAAGCAGTTATCATGGTTGGCCTCA
AACCAATTGGATACTCTGCATTTTCAGACGTGACACAAAATAGTTGAAATAGAAGAAG
Found at i:228919 original size:14 final size:14
Alignment explanation
Indices: 228900--228926 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
228890 GAACTTAAAG
228900 TTGACACAAAAGAC
1 TTGACACAAAAGAC
228914 TTGACACAAAAGA
1 TTGACACAAAAGA
228927 AGATCAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.19, G:0.15, T:0.15
Consensus pattern (14 bp):
TTGACACAAAAGAC
Found at i:229649 original size:379 final size:374
Alignment explanation
Indices: 228901--230029 Score: 1297
Period size: 379 Copynumber: 3.0 Consensus size: 374
228891 AACTTAAAGT
* * ** *
228901 TGACACAAAAGACTTGACACAAAAGAAGATCAAAG-AAAGGGTTTATATCAAAAGTGAGGATGAA
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGATAAA
* * * * *
228965 ATCAGGGAGGGAAGCCTTTAAGGGAAATATACACGATTGTATAAGCACCCTAAACTCATTTTATG
66 AT-AGGGAGCGAAGCCTTTAAGGGAAATAAACATGATTGTATAAGCACCCCAAACTCTTTTTATG
* * * * * * *
229030 TTTCGTTTCCCCTCCTTTTTCACTCGGTGCGTATCTGAAACTTGAATTGTGGTGAAATTCGACAA
130 TTTTGTTT-CTCTCTTTTTTCACTCGATGTGTATCTAAAACTTGAATTGTGGTGAAATTTGACAA
* *
229095 TGCAAAAAAAGTGATAAATAATGCTTAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTCA
194 TGC-AAAAAAGTGATAAATAATG-TTAAAAATAAAAGAGAAACACATGTTTTTTGAGATATTTAA
** * * * * *
229160 GCGAACTTTCCGTTGAAAGATTAGAGTCATAATTACAACGGAAATAATACACAAATATAGTACGA
257 GCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGGTAAGA
** * * * *
229225 AACAGTTATCTTAGTTGGCCTCTAACCAATTGTATAT-TCTGCATTTTCAGATA
322 AGTAGTTATCTTGGTTGGCCTCTAACCAATTGGAT-TCTTTGCATTTTCAGACA
* * * * *
229278 TGACACAAAGTGCTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTGAAGTTCAA
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGAT-AA
* * *
229343 AATAGGGAGCGAAGCCTTTTAGGGAAATAGACTTGATTGTATAAGCACCCCCAAACTCTTTTTAT
65 AATAGGGAGCGAAGCCTTTAAGGGAAATAAACATGATTGTATAAGCA-CCCCAAACTCTTTTTAT
*
229408 GTTTTGTTTCTCTTCTTTTTTCACTCGATGTGTATCTAAAAGTTGAATTGTGGTGAAATTTGACA
129 GTTTTGTTTCTC-TCTTTTTTCACTCGATGTGTATCTAAAACTTGAATTGTGGTGAAATTTGACA
*
229473 ATGCAAAACAAGTGATAAATAATGTTAGAAAATAAAAGAGAAACACATGTTTTTTGTGATATTTA
193 ATGCAAAA-AAGTGATAAATAATGTTA-AAAATAAAAGAGAAACACATGTTTTTTGAGATATTTA
* * * * * *
229538 AGCGAACATTCCAATGAAAGATTAGTGTCATAATTACAGTGAAAACAACT-GACAAATTTGGTAG
256 AGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAA-TAGACAAATATGGTAA
* * *
229602 GAAGTAGTTATCTTGGTTGGCCTCTAACTAATTGGATTCTTTGCATTTTTAGACG
320 GAAGTAGTTATCTTGGTTGGCCTCTAACCAATTGGATTCTTTGCATTTTCAGACA
* * * *
229657 TGACACAAAATACTTGAAACAGAAGAAGATCAAAGAAAATAGTTTATATAAAAAGTGAGGATGAG
1 TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGAT-AA
* * * * *
229722 AACAGGGAGCGAAACCTTTAAGGGAAATAAACATGATTGTATAAGCAACTCAAACTCTTTCTATG
65 AATAGGGAGCGAAGCCTTTAAGGGAAATAAACATGATTGTATAAGCACCCCAAACTCTTTTTATG
* * * *
229787 TTTT-TCTTCTACCCTTTATTCACTC-AGTGTGT-T-TAAAAATCTTGAATTATGGTGAAAGTTG
130 TTTTGT-TTCT-CTCTTTTTTCACTCGA-TGTGTATCT-AAAA-CTTGAATTGTGGTGAAATTTG
* * * * * *
229848 ACAATGCAAATAAAGTGGTATATAATGGTAAAAAATAAAACAAAAATCTA-ATG-TTTTTGAAAA
190 ACAATGCAAA-AAAGTGATAAATAAT-GTTAAAAATAAAAGAGAAA-C-ACATGTTTTTTG-AGA
* *
229911 TATTTAAGCGTACTTTCCAATGAAAGATTAGAGTCATTATTACAATGGAAACAATAGACAAATAT
250 TATTTAAGCGAACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATAT
* * * *
229976 GGCAAGAAGTACG-TATCGTGGTTGGCCTTTAACCAATTGGATACTTTGCATTTT
315 GGTAAGAAGTA-GTTATCTTGGTTGGCCTCTAACCAATTGGATTCTTTGCATTTT
230030 AGGACTCTGT
Statistics
Matches: 640, Mismatches: 92, Indels: 38
0.83 0.12 0.05
Matches are distributed among these distances:
376 1 0.00
377 38 0.06
378 169 0.26
379 429 0.67
380 3 0.00
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (374 bp):
TGACACAAAATACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCAAAAGTGAGGATAAA
ATAGGGAGCGAAGCCTTTAAGGGAAATAAACATGATTGTATAAGCACCCCAAACTCTTTTTATGT
TTTGTTTCTCTCTTTTTTCACTCGATGTGTATCTAAAACTTGAATTGTGGTGAAATTTGACAATG
CAAAAAAGTGATAAATAATGTTAAAAATAAAAGAGAAACACATGTTTTTTGAGATATTTAAGCGA
ACTTTCCAATGAAAGATTAGAGTCATAATTACAATGGAAACAATAGACAAATATGGTAAGAAGTA
GTTATCTTGGTTGGCCTCTAACCAATTGGATTCTTTGCATTTTCAGACA
Found at i:231590 original size:378 final size:374
Alignment explanation
Indices: 230943--231944 Score: 1294
Period size: 378 Copynumber: 2.6 Consensus size: 374
230933 TTCATTAAAG
* * * * *
230943 ACTTGACACAAAAGAAGATCAATGAAAAGGTTTATATCTAAAGTGAGGATGAAAATAGGGAGTGA
1 ACTTGAAACAAAAGAAGATCAAAGAAAAAGTTTATATCGAAAGTGAGGTTGAAAATAGGGAGTGA
* * * *
231008 AGCCTTTAATGGAAATATACATGATTGTAT-AGCACCCTAAACTCGTTTTATGTTTTGTTT-GCC
66 AGCCTTTAA-GGAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCC
* * *
231071 CTCTTTTACACTCT-GTGCGTATCTGAAACTTGAATTGTGGTGAAATTTTACAATGCAAAACAAG
130 CT-TTTTTCACT-TGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAG
* * * *
231135 TGATAAATAATTTTTATAAATAAAAGAGAAACACATGTTTTTGGAGGTATTTAAAAGAACTTTTT
193 TGATAAATAA-TTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAAAGAACTTTTC
* * * *
231200 GTTGACAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGGTACGAAAG-AATTGTC
257 GTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTA-GAAAGCAAGTATC
* * *
231264 TT-AGTTAGCCTCTAACCAATTGGATATTTTGCATTTTCAGACATGACACAAAAT
321 TTGA-TTAGCCTCTAACCAATTGGATAATCTGCATTTTCAGACATAACACAAAAT
* *
231318 ACTTGAAACAAAAGAAGATCAAAGAAAACAGTTTATATCGAAAGTAAAGTTGAAAATAGGGAGTG
1 ACTTGAAACAAAAGAAGATCAAAGAAAA-AGTTTATATCGAAAGTGAGGTTGAAAATAGGGAGTG
231383 AAGCCTTTTAAGGAAATAGACATGATTGTATAAGCACCACCAAACTCTTTTTATGTTTTGTTTCC
65 AAGCC-TTTAAGGAAATAGACATGATTGTATAAGCACC-CCAAACTCTTTTTATGTTTTGTTTCC
* * *
231448 TCCCTTTTTTCACTTGGCGCGTATTTGAAAGTTGAATTATGGTGAAATTTGACAATGCAAAACAA
128 -CCCTTTTTTCACTTGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAA
* * * **
231513 GTGATAAATAATTTCAAAAATAAAAGAGGAACACATGTTTTTGGTGATATTTAAGTGAACTTTTC
192 GTGATAAATAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAAAGAACTTTTC
* * * *
231578 GTTGAAAGATTAGAGTCATAATTACAATGGAAATAAGAGACAAATATGCTAGGAAGCAGGTATCT
257 GTTGAAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTAGAAAGCAAGTATCT
* * * *
231643 TGATTGGCCTCTAGCCAATTGGATAATCTGTATTTTCAGACTTAACACAAAAT
322 TGATTAGCCTCTAACCAATTGGATAATCTGCATTTTCAGACATAACACAAAAT
* *
231696 ACTTGAAACAAAAGAAGATCAAAGAAAATAGTTTATATCGAAAGTGAGGTTGAAAACAGGGAGCG
1 ACTTGAAACAAAAGAAGATCAAAGAAAA-AGTTTATATCGAAAGTGAGGTTGAAAATAGGGAGTG
* * * *
231761 AAGACTTGAAGAGAAATAGACATGATTATATAAGCAGCCCAAACTCTTTTTATGTTTTGTTTCCC
65 AAGCCTTTAAG-GAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCC
* * * * * *
231826 CCATTTTTTCACTCGGCGCGTATCTCAAACTTAAATTGTGGTGAAAGTTGACAACGCAAAACAAT
129 CC-TTTTTTCACTTGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAG
* * * * *
231891 TGGTATATAATGTTAAAAAATAAAAGAAAAAAAACTAATGTTTTTGAAGATATT
193 TGATAAATAAT-TTAAAAAATAAAAG-AGAAACAC--ATGTTTTTGGAGATATT
231945 GAAGCGAAAT
Statistics
Matches: 546, Mismatches: 66, Indels: 24
0.86 0.10 0.04
Matches are distributed among these distances:
375 26 0.05
376 58 0.11
377 108 0.20
378 266 0.49
379 69 0.13
380 4 0.01
381 15 0.03
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.31
Consensus pattern (374 bp):
ACTTGAAACAAAAGAAGATCAAAGAAAAAGTTTATATCGAAAGTGAGGTTGAAAATAGGGAGTGA
AGCCTTTAAGGAAATAGACATGATTGTATAAGCACCCCAAACTCTTTTTATGTTTTGTTTCCCCC
TTTTTTCACTTGGCGCGTATCTGAAACTTGAATTGTGGTGAAATTTGACAATGCAAAACAAGTGA
TAAATAATTTAAAAAATAAAAGAGAAACACATGTTTTTGGAGATATTTAAAAGAACTTTTCGTTG
AAAGATTAGAGTCATAATTACAATGGAAACAACAGACAAATATGCTAGAAAGCAAGTATCTTGAT
TAGCCTCTAACCAATTGGATAATCTGCATTTTCAGACATAACACAAAAT
Done.