Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014664.1 Kokia drynarioides strain JFW-HI SEQ_129703, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3619
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38


Found at i:352 original size:18 final size:18

Alignment explanation


    Indices: 329--366  Score: 51
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        319 TAATTTAACT

                               
        329 TTTTAAAATT-TATTTTAA
          1 TTTTAAAATTATA-TTTAA

                  *           
        347 TTTTAATATTATATTTAA
          1 TTTTAAAATTATATTTAA

              
        365 TT
          1 TT

        367 AAAAAATAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  18   16  0.89
  19    2  0.11

ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63


Consensus pattern (18 bp):   
TTTTAAAATTATATTTAA
Done.