genome.fa.s14665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014665.1 Kokia drynarioides strain JFW-HI SEQ_129704, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  263728

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119--151	16	2.0	17	88	5	50	48	3	6	42	1.43
2823--2870	22	2.2	21	77	3	51	50	0	14	35	1.44
3718--3863	41	3.5	40	82	4	166	38	8	24	28	1.85
3718--3872	82	1.9	83	85	4	215	39	8	24	27	1.84
4346--4393	21	2.2	23	78	14	57	29	16	16	37	1.91
30274--30314	21	2.0	21	85	9	57	31	19	19	29	1.96
32383--32437	23	2.4	23	96	0	101	23	30	27	18	1.97
33706--34733	81	12.7	79	78	8	850	24	15	26	33	1.95
33706--34731	39	25.5	40	71	13	517	24	15	26	33	1.95
33705--34725	201	5.1	199	79	8	989	24	15	26	33	1.95
34735--34923	97	2.0	95	80	7	211	25	19	17	36	1.94
34979--35292	101	3.2	100	73	12	306	25	17	19	37	1.93
34985--35364	196	1.9	196	83	2	494	27	17	18	36	1.93
35993--36031	20	1.9	21	89	5	62	43	5	20	30	1.73
36322--36393	34	2.2	33	87	7	110	1	13	0	84	0.68
36323--36391	26	2.6	25	84	10	86	1	14	0	84	0.70
36320--36385	7	9.9	7	81	4	75	1	15	0	83	0.72
36322--36393	24	3.2	20	78	18	72	1	13	0	84	0.68
42914--43143	43	5.2	44	81	9	274	28	24	9	37	1.87
70091--70218	64	2.0	64	100	0	256	29	12	20	37	1.89
88602--88882	63	4.5	61	71	7	161	25	7	30	36	1.83
94068--94121	21	2.6	21	76	5	56	25	38	18	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104998--105043	23	2.0	23	87	8	67	19	4	2	73	1.10
109067--109096	3	10.0	3	92	0	51	33	3	63	0	1.11
109064--109107	12	3.7	12	87	6	63	34	6	56	2	1.38
117422--117538	58	2.0	58	100	0	234	34	20	19	25	1.96
120548--120585	18	2.1	18	90	0	58	18	13	10	57	1.63
134096--134155	27	2.3	26	83	11	70	46	0	0	53	1.00
144028--144089	30	2.2	26	76	20	63	64	6	6	22	1.40
144046--144088	14	3.1	14	83	9	61	69	4	6	18	1.29
144184--144225	21	2.0	21	85	0	57	26	0	33	40	1.56
144224--144418	28	6.9	28	73	15	125	36	4	25	33	1.75
144219--144418	56	3.5	56	79	8	199	36	4	27	33	1.75
145766--145802	17	2.2	17	100	0	74	18	5	37	37	1.74
148651--148693	3	14.3	3	80	9	52	32	2	2	62	1.20
149091--149124	18	1.9	18	88	5	52	35	0	5	58	1.22
149092--149197	43	2.4	44	84	6	144	34	6	3	54	1.44
149136--149167	17	1.9	16	93	6	55	43	0	3	53	1.16
152034--152095	22	2.9	22	92	4	101	46	27	4	20	1.71
152146--152210	21	3.1	21	77	16	73	23	1	30	44	1.62
157538--157634	18	5.4	17	70	15	61	27	1	4	67	1.16
157571--157624	26	2.1	26	86	10	76	33	0	3	62	1.12
157891--157949	26	2.2	26	79	8	66	72	0	3	23	0.99
158050--158082	17	2.0	17	88	5	50	57	3	6	33	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158981--159028	24	2.0	23	84	11	62	4	27	0	68	1.07
160655--160709	3	18.3	3	100	0	110	0	34	0	65	0.93
161280--161354	23	3.3	23	84	0	105	24	22	22	30	1.99
167734--167786	18	2.9	18	77	5	54	22	9	20	47	1.79
173984--174024	19	2.0	21	86	9	59	19	19	14	46	1.84
174735--174770	6	6.0	6	86	0	54	38	0	27	33	1.57
176841--176958	40	3.0	40	84	1	157	61	9	2	26	1.39
183757--183781	5	5.0	5	100	0	50	60	0	40	0	0.97
199868--199910	9	4.7	9	80	5	50	34	2	41	20	1.65
200814--200861	25	2.0	24	84	12	62	56	4	2	37	1.30
211844--211890	24	2.0	24	91	8	78	25	10	8	55	1.62
213489--213538	18	2.8	18	82	14	59	36	28	18	18	1.94
220383--220483	24	4.2	24	84	0	139	29	22	21	25	1.99
222771--222827	3	19.0	3	76	20	57	68	0	29	1	1.00
222771--222827	21	2.7	22	76	17	66	68	0	29	1	1.00
222774--222827	18	3.1	17	86	5	72	68	0	29	1	1.00
225363--225417	24	2.3	24	81	15	69	27	16	7	49	1.72
231191--231279	38	2.3	38	80	5	99	32	25	16	24	1.96
233863--233950	34	2.6	34	88	0	131	27	29	3	39	1.73
233858--233980	17	7.2	17	69	0	66	25	26	7	40	1.81
234542--234601	3	20.0	3	100	0	120	66	0	0	33	0.92
235774--235817	3	14.7	3	100	0	88	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236345--236463	38	3.1	38	81	4	134	31	22	20	26	1.98
239083--239126	17	2.5	17	88	3	61	13	18	15	52	1.75
240165--240263	38	2.6	38	81	0	126	33	19	20	27	1.96
242911--242959	17	2.9	17	84	0	53	22	18	12	46	1.82
243851--243948	38	2.6	38	81	0	124	31	23	19	25	1.98
245730--245754	2	12.5	2	100	0	50	0	52	0	48	1.00
250654--250749	41	2.3	41	92	0	156	36	26	6	31	1.81
251834--251999	82	2.0	82	98	0	323	35	19	13	31	1.90
254359--254406	3	16.0	3	100	0	96	66	0	0	33	0.92
255175--255660	123	4.0	122	90	1	733	38	11	7	43	1.68
255514--255560	21	2.2	22	81	11	53	29	10	2	57	1.44
258721--258783	3	20.3	3	90	6	99	65	0	0	34	0.93
259490--259537	3	16.0	3	100	0	96	66	0	0	33	0.92
260306--260791	123	4.0	122	90	1	733	38	11	7	43	1.68
260645--260691	21	2.2	22	81	11	53	29	10	2	57	1.44

Tables:   1

The End!