Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014668.1 Kokia drynarioides strain JFW-HI SEQ_129707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5827
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:1024 original size:33 final size:34

Alignment explanation


    Indices: 948--1024  Score: 88
    Period size: 32  Copynumber: 2.4  Consensus size: 34

        938 CCTATTTACT

                     *  *    *      **        
        948 TAAAATAAATAATTTTAGTCAAAATGAAATTAGA
          1 TAAAATAAACAAATTTAATCAAAACAAAATTAGA

                                              
        982 -AAAAT-AACAAATTTAATCAAAACAAAATTA-A
          1 TAAAATAAACAAATTTAATCAAAACAAAATTAGA

                        
       1013 TAAAATAAACAA
          1 TAAAATAAACAA

       1025 CTTTGACTAA


Statistics
Matches: 36,  Mismatches: 5, Indels: 5
        0.78            0.11        0.11

Matches are distributed among these distances:
  31    1  0.03
  32   25  0.69
  33   10  0.28

ACGTcount: A:0.64, C:0.06, G:0.04, T:0.26


Consensus pattern (34 bp):   
TAAAATAAACAAATTTAATCAAAACAAAATTAGA
Done.