Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014669.1 Kokia drynarioides strain JFW-HI SEQ_129708, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17796
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:16501 original size:29 final size:29

Alignment explanation


    Indices: 16451--16507  Score: 80
    Period size: 29  Copynumber: 2.0  Consensus size: 29

      16441 ATATATCTGT

                             *           
      16451 TGTGTGATATTACTTGTTGATGTGTTATC
          1 TGTGTGATATTACTTGTAGATGTGTTATC

                           *             
      16480 TGTGTGATATTA-TTATGAGATGTGTTAT
          1 TGTGTGATATTACTTGT-AGATGTGTTAT

      16508 TAGTATGACC


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  28    3  0.12
  29   22  0.88

ACGTcount: A:0.21, C:0.04, G:0.25, T:0.51


Consensus pattern (29 bp):   
TGTGTGATATTACTTGTAGATGTGTTATC
Done.