Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014671.1 Kokia drynarioides strain JFW-HI SEQ_129710, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8597
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.32


Found at i:2664 original size:20 final size:20

Alignment explanation


    Indices: 2628--2665  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       2618 TCATTAAGCT

                        *       
       2628 TTAATTAACCTTTTTTATTC
          1 TTAATTAACCTTATTTATTC

                               
       2648 TTAATTAAACC-TATTTAT
          1 TTAATT-AACCTTATTTAT

       2666 AATTAATATA


Statistics
Matches: 16,  Mismatches: 1, Indels: 2
        0.84            0.05        0.11

Matches are distributed among these distances:
  20   12  0.75
  21    4  0.25

ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55


Consensus pattern (20 bp):   
TTAATTAACCTTATTTATTC
Done.