genome.fa.s14672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014672.1 Kokia drynarioides strain JFW-HI SEQ_129711, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69557

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12533--13064	43	12.8	42	75	10	239	33	26	14	25	1.94
12528--13037	81	6.2	82	80	5	363	33	26	13	26	1.94
12812--13054	43	5.6	43	88	2	299	32	26	13	27	1.93
12812--13069	129	2.0	131	85	3	351	33	25	13	27	1.94
15682--15881	89	2.2	88	85	2	274	23	19	18	39	1.92
15694--15947	45	5.7	45	72	6	176	23	20	19	37	1.94
15682--15957	89	3.1	89	82	4	270	23	19	18	38	1.93
17649--17791	36	4.0	36	81	0	160	30	6	23	39	1.81
17646--17804	72	2.2	72	87	2	221	30	6	23	39	1.81
17646--17810	36	4.6	36	80	0	143	30	6	23	40	1.80
21361--21406	24	1.9	24	95	0	83	28	13	30	28	1.94
26303--26518	49	3.9	56	83	10	277	39	4	18	37	1.72
26358--26436	25	3.2	25	72	16	83	43	2	16	37	1.62
26448--26492	17	2.9	15	79	20	56	35	2	24	37	1.68
26458--26571	48	2.4	48	82	5	126	35	6	17	41	1.74
27892--27959	32	2.1	32	94	0	118	26	1	19	52	1.54
29578--29683	21	5.1	21	83	2	133	38	22	26	12	1.89
32005--32043	13	3.0	13	84	0	51	53	25	5	15	1.62
42619--42680	23	2.7	23	76	2	70	24	17	16	41	1.89
42725--42781	28	2.0	29	83	13	73	59	7	8	24	1.52
43350--43394	14	3.1	14	81	6	54	26	2	24	46	1.64
46694--46747	23	2.3	23	81	6	65	29	0	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46694--46745	22	2.3	23	83	3	61	28	0	1	69	0.99
53828--53873	23	2.0	23	100	0	92	21	34	26	17	1.95
56222--56302	38	2.1	38	90	0	126	34	16	18	30	1.93
56617--56651	13	2.7	13	86	0	52	40	0	22	37	1.55
57729--57774	21	2.2	21	88	0	65	21	19	39	19	1.93
67180--67234	27	2.0	27	85	3	74	65	3	3	27	1.26
68150--68208	30	2.0	30	83	12	77	44	1	3	50	1.28
68805--68847	4	10.8	4	80	9	52	76	0	20	2	0.89
69222--69264	21	2.1	21	86	4	61	25	2	13	58	1.48

Tables:   1

The End!