Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014674.1 Kokia drynarioides strain JFW-HI SEQ_129713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9195
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.36


Found at i:3238 original size:19 final size:18

Alignment explanation


    Indices: 3216--3251  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       3206 TAAAAAAGTC

                               
       3216 GAGAAAAAAAGAAAAATAT
          1 GAGAAAAAAA-AAAAATAT

                    *        
       3235 GAGAAAAATAAAAAATA
          1 GAGAAAAAAAAAAAATA

       3252 AAAAAAATAT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11


Consensus pattern (18 bp):   
GAGAAAAAAAAAAAATAT
Done.