Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014676.1 Kokia drynarioides strain JFW-HI SEQ_129715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22947
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:1886 original size:17 final size:17

Alignment explanation


    Indices: 1864--1902  Score: 60
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       1854 CTCCACCTTG

                   *    *    
       1864 ACAAGAATTCTCTACGA
          1 ACAAGAACTCTCAACGA

                             
       1881 ACAAGAACTCTCAACGA
          1 ACAAGAACTCTCAACGA

                 
       1898 ACAAG
          1 ACAAG

       1903 TTCTCCACCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  17   20  1.00

ACGTcount: A:0.46, C:0.26, G:0.13, T:0.15


Consensus pattern (17 bp):   
ACAAGAACTCTCAACGA

Found at i:13155 original size:16 final size:15

Alignment explanation


    Indices: 13134--13171  Score: 51
    Period size: 15  Copynumber: 2.5  Consensus size: 15

      13124 CTAAAATACC

                            
      13134 AAAAATAAAAATAAGT
          1 AAAAATAAAAATAA-T

                           
      13150 AAAAAT-AAAATAAT
          1 AAAAATAAAAATAAT

             *      
      13164 ATAAATAA
          1 AAAAATAA

      13172 TCAAAATAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 3
        0.83            0.04        0.12

Matches are distributed among these distances:
  14    6  0.30
  15    8  0.40
  16    6  0.30

ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21


Consensus pattern (15 bp):   
AAAAATAAAAATAAT

Found at i:13164 original size:24 final size:23

Alignment explanation


    Indices: 13137--13186  Score: 64
    Period size: 23  Copynumber: 2.1  Consensus size: 23

      13127 AAATACCAAA

                                    
      13137 AATAAAAATAAGTAAAAATAAAAT
          1 AATAAAAATAA-TAAAAATAAAAT

                *       *        * 
      13161 AATATAAATAATCAAAATAAATT
          1 AATAAAAATAATAAAAATAAAAT

               
      13184 AAT
          1 AAT

      13187 GACGACAAAT


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  23   13  0.57
  24   10  0.43

ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26


Consensus pattern (23 bp):   
AATAAAAATAATAAAAATAAAAT
Done.