genome.fa.s14680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014680.1 Kokia drynarioides strain JFW-HI SEQ_129719, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28823

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1315--1370	28	2.0	29	85	3	78	39	3	5	51	1.42
5847--6117	30	9.3	29	79	11	186	36	2	23	37	1.68
5862--6122	59	4.5	57	75	12	196	36	2	24	37	1.68
5847--6120	29	9.4	29	79	10	190	35	2	24	37	1.68
7922--7998	11	6.2	12	77	19	86	59	1	1	37	1.14
7943--7998	23	2.4	23	93	0	94	60	1	0	37	1.07
7913--7998	40	2.2	40	89	0	127	56	3	1	38	1.24
7926--7994	17	4.1	17	81	5	77	59	1	1	37	1.15
8372--9319	208	4.6	208	82	3	991	22	22	17	36	1.94
9750--10263	50	10.3	50	76	8	413	15	31	18	35	1.92
9803--10234	149	2.9	148	85	4	546	15	31	17	35	1.92
9750--10267	99	5.2	100	77	6	494	15	31	18	34	1.92
14856--15133	96	2.9	96	93	1	459	40	15	16	27	1.89
15385--15451	30	2.3	28	80	10	71	38	4	22	34	1.74
15507--15711	58	3.5	58	76	12	195	34	3	25	36	1.75
15578--15712	30	4.5	31	84	6	129	35	3	22	38	1.72
15507--15710	29	6.9	29	78	11	150	34	3	25	36	1.73
18737--18773	18	2.1	18	89	0	56	48	0	27	24	1.51
19416--19602	93	2.0	93	95	0	338	32	14	20	31	1.93
20555--20616	11	5.0	12	75	19	56	53	1	3	41	1.27
20570--20609	16	2.5	16	87	0	53	55	0	5	40	1.22
22213--22279	30	2.3	28	80	10	71	38	4	22	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22335--22539	58	3.5	58	76	12	195	34	3	25	36	1.75
22406--22540	30	4.5	31	84	6	129	35	3	22	38	1.72
22335--22538	29	6.9	29	78	11	150	34	3	25	36	1.73
25565--25601	18	2.1	18	89	0	56	48	0	27	24	1.51
26244--26430	93	2.0	93	95	0	338	32	14	20	31	1.93
27383--27444	11	5.0	12	75	19	56	53	1	3	41	1.27
27398--27437	16	2.5	16	87	0	53	55	0	5	40	1.22

Tables:   1

The End!