Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014681.1 Kokia drynarioides strain JFW-HI SEQ_129720, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 863

Length: 1439
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35


Found at i:1253 original size:13 final size:13

Alignment explanation


    Indices: 1235--1259  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1225 TTGTAAATAA

                         
       1235 AAAAATTTTCTCT
          1 AAAAATTTTCTCT

                        
       1248 AAAAATTTTCTC
          1 AAAAATTTTCTC

       1260 AAATAATCTC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44


Consensus pattern (13 bp):   
AAAAATTTTCTCT
Done.