genome.fa.s14683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014683.1 Kokia drynarioides strain JFW-HI SEQ_129722, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  373346

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12971--13004	15	2.3	15	90	5	52	44	11	14	29	1.81
13086--13271	49	3.7	49	75	14	189	44	8	12	34	1.73
13061--13267	104	2.0	105	93	0	353	43	8	12	35	1.73
29117--29143	4	6.8	4	100	0	54	22	0	0	77	0.76
34347--34784	219	2.0	219	100	0	876	31	20	16	31	1.95
46576--46641	33	2.0	33	100	0	132	36	15	21	27	1.93
48238--48306	33	2.1	33	100	0	138	31	14	11	42	1.82
56259--56302	2	22.0	2	95	0	79	0	52	0	47	1.00
56302--56328	2	13.5	2	100	0	54	48	0	0	51	1.00
57664--57709	21	2.2	21	92	0	74	41	15	19	23	1.89
60724--60776	27	2.0	27	88	7	81	26	9	33	30	1.88
62228--62294	33	2.0	33	100	0	134	26	16	5	50	1.68
62969--63003	18	2.0	17	88	5	52	65	0	8	25	1.21
69176--69225	20	2.5	20	75	15	57	12	26	28	34	1.92
80701--80742	18	2.3	18	84	8	50	23	4	4	66	1.30
86817--86850	9	3.7	9	88	4	50	20	0	0	79	0.73
87186--87218	17	1.9	17	88	11	50	78	0	18	3	0.87
87590--87632	21	2.1	21	86	4	61	25	2	13	58	1.48
87892--87940	16	3.2	16	75	16	59	57	6	0	36	1.24
89237--89321	43	2.0	43	86	4	118	30	11	10	47	1.74
89889--90025	45	3.0	45	89	0	202	31	27	21	18	1.97
93240--93303	4	15.5	4	79	12	58	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93241--93303	9	7.0	9	80	10	58	0	30	0	69	0.88
93240--93303	17	3.6	17	77	8	65	0	31	0	68	0.90
94728--94780	6	8.8	6	100	0	106	33	49	0	16	1.47
100427--100514	43	2.1	42	86	2	122	45	11	9	34	1.72
114329--114369	21	2.0	21	85	9	57	68	2	2	26	1.15
119019--119066	19	2.7	18	81	15	55	29	0	0	70	0.87
119327--119356	12	2.5	12	88	0	51	0	10	0	90	0.47
120564--120615	27	1.9	27	92	0	86	30	11	36	21	1.89
120753--120803	14	3.7	14	82	10	61	64	0	33	1	1.05
123621--123710	47	1.9	47	81	4	110	50	10	7	32	1.65
123782--123830	16	3.2	16	73	26	61	32	0	8	59	1.27
139364--139459	28	3.3	28	76	16	81	63	0	1	35	1.01
139665--139704	21	1.9	21	90	10	64	65	2	0	32	1.06
151595--151676	31	2.7	30	81	7	85	48	8	1	41	1.41
152230--152434	102	2.0	102	92	0	338	33	16	21	28	1.95
163374--163479	51	2.1	52	83	1	133	34	17	2	44	1.64
177230--177255	13	2.0	13	100	0	52	61	15	0	23	1.33
177235--177321	23	3.6	22	71	21	59	66	9	1	22	1.27
183806--183908	44	2.3	44	91	0	161	15	17	39	27	1.90
184701--184754	17	3.5	17	69	23	55	18	20	9	51	1.73
184693--184795	29	3.6	29	89	5	147	22	19	12	45	1.84
184718--184798	12	5.9	12	69	25	54	22	18	14	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198059--198096	18	2.0	20	90	10	62	55	0	2	42	1.14
202269--202310	16	2.6	16	80	0	57	50	0	0	50	1.00
204497--204567	29	2.6	26	72	23	65	47	1	0	50	1.09
208376--208426	19	2.8	18	80	19	61	27	0	3	68	1.07
208376--208426	18	2.7	19	79	11	61	27	0	3	68	1.07
208359--208422	30	2.2	28	80	5	74	26	1	4	67	1.19
215473--215509	17	2.2	17	90	0	56	43	13	5	37	1.67
217006--217031	3	8.7	3	100	0	52	0	30	0	69	0.89
219897--219921	5	5.0	5	100	0	50	0	20	0	80	0.72
234136--234198	26	2.4	27	75	5	65	57	6	6	30	1.49
235043--235073	3	10.3	3	100	0	62	67	0	0	32	0.91
251131--251165	3	11.7	3	87	0	52	60	37	2	0	1.12
263918--263947	9	3.3	9	90	0	51	0	23	0	76	0.78
264294--264335	6	7.0	6	91	0	57	57	14	28	0	1.38
271642--271675	15	2.1	17	89	10	54	2	20	0	76	0.92
273774--273823	24	2.1	23	85	3	64	24	6	10	60	1.51
275662--275724	24	2.6	24	89	0	99	23	14	11	50	1.74
278956--279017	20	3.0	20	81	6	72	67	11	1	19	1.29
284815--284840	13	2.0	13	100	0	52	0	0	7	92	0.39
293980--294007	5	5.6	5	100	0	56	0	0	39	60	0.97
307686--307811	23	5.5	22	79	13	114	12	25	19	42	1.87
313341--313366	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317013--317050	19	2.0	19	90	10	60	57	7	13	21	1.60
327680--327710	2	15.5	2	100	0	62	0	0	48	51	1.00
336923--337220	153	1.9	153	95	1	535	24	27	13	35	1.92
339498--339572	21	3.7	21	74	15	50	57	0	0	42	0.98
339866--339910	19	2.3	20	78	17	51	35	0	22	42	1.54
340606--340632	3	9.0	3	100	0	54	33	33	33	0	1.58
341610--341642	2	16.5	2	100	0	66	51	48	0	0	1.00
345469--345565	23	4.2	23	97	0	176	43	23	21	11	1.85
348663--348723	20	3.0	21	81	11	81	57	0	0	42	0.98
349554--349609	23	2.4	23	100	0	112	42	23	23	10	1.85
352707--352767	20	3.0	21	81	11	81	57	0	0	42	0.98
354273--354321	16	3.0	17	79	8	57	40	10	0	48	1.37
357527--357560	17	2.0	17	88	0	50	50	0	2	47	1.16
368385--368474	45	2.0	46	88	2	137	14	23	17	44	1.86

Tables:   1

The End!