Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014686.1 Kokia drynarioides strain JFW-HI SEQ_129725, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2961
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35


Found at i:1515 original size:30 final size:30

Alignment explanation


    Indices: 1481--1545  Score: 103
    Period size: 30  Copynumber: 2.2  Consensus size: 30

       1471 CAACTTAGCA

                    * *                   
       1481 AACAAATATCTCTAAAATAATAACAAAATT
          1 AACAAATACCACTAAAATAATAACAAAATT

                   *                      
       1511 AACAAATGCCACTAAAATAATAACAAAATT
          1 AACAAATACCACTAAAATAATAACAAAATT

                 
       1541 AACAA
          1 AACAA

       1546 TAAAATAAGT


Statistics
Matches: 32,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.62, C:0.15, G:0.02, T:0.22


Consensus pattern (30 bp):   
AACAAATACCACTAAAATAATAACAAAATT
Done.