Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014689.1 Kokia drynarioides strain JFW-HI SEQ_129728, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24039
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Found at i:64 original size:23 final size:22
Alignment explanation
Indices: 34--206 Score: 145
Period size: 23 Copynumber: 7.5 Consensus size: 22
24 ACGCTAGCGC
34 GCTTACTGTTTCGCACTTCGTGT
1 GCTTACTGTTTCGCACTT-GTGT
*
57 GCTTACTGTTTCACACTTCGTGT
1 GCTTACTGTTTCGCACTT-GTGT
*
80 GCTTATTGTTTCGCACTTTGTGT
1 GCTTACTGTTTCGCAC-TTGTGT
* *
103 GCCTACTGATTT-GCGCTATGTGT
1 GCTTACTG-TTTCGCACT-TGTGT
* *
126 GCATACTGATT-GCACTGTGTGT
1 GCTTACTGTTTCGCACT-TGTGT
* *
148 GCCTACTGGATT-GCACTGTGTGT
1 GCTTACT-GTTTCGCACT-TGTGT
171 GCTTACTGTTTCCCCAGCACTTGTGT
1 GCTTACTGTTT---C-GCACTTGTGT
197 GCTTACTGTT
1 GCTTACTGTT
207 AAGTACTTCG
Statistics
Matches: 128, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
22 21 0.16
23 82 0.64
24 5 0.04
26 15 0.12
27 5 0.04
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (22 bp):
GCTTACTGTTTCGCACTTGTGT
Found at i:126 original size:46 final size:45
Alignment explanation
Indices: 34--182 Score: 160
Period size: 46 Copynumber: 3.3 Consensus size: 45
24 ACGCTAGCGC
* * *
34 GCTTACTGTTTCGCACTTCGTGTGCTTACTG-TTTCACACTTCGTGT
1 GCTTACTGTTTCGCACTTTGTGTGCCTACTGATTT-GCACTT-GTGT
* *
80 GCTTATTGTTTCGCACTTTGTGTGCCTACTGATTTGCGCTATGTGT
1 GCTTACTGTTTCGCACTTTGTGTGCCTACTGATTTGCACT-TGTGT
* * *
126 GCATACTGATT-GCACTGTGTGTGCCTACTGGA-TTGCACTGTGTGT
1 GCTTACTGTTTCGCACTTTGTGTGCCTACT-GATTTGCACT-TGTGT
171 GCTTACTGTTTC
1 GCTTACTGTTTC
183 CCCAGCACTT
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
45 37 0.43
46 45 0.52
47 4 0.05
ACGTcount: A:0.12, C:0.22, G:0.23, T:0.42
Consensus pattern (45 bp):
GCTTACTGTTTCGCACTTTGTGTGCCTACTGATTTGCACTTGTGT
Found at i:150 original size:45 final size:45
Alignment explanation
Indices: 92--178 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
82 TTATTGTTTC
* *
92 GCACTTTGTGTGCCTACT-GATTTGCGCTATGTGTGCATACTGATT
1 GCACTGTGTGTGCCTACTGGA-TTGCACTATGTGTGCATACTGATT
* *
137 GCACTGTGTGTGCCTACTGGATTGCACTGTGTGTGCTTACTG
1 GCACTGTGTGTGCCTACTGGATTGCACTATGTGTGCATACTG
179 TTTCCCCAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 35 0.95
46 2 0.05
ACGTcount: A:0.14, C:0.21, G:0.28, T:0.38
Consensus pattern (45 bp):
GCACTGTGTGTGCCTACTGGATTGCACTATGTGTGCATACTGATT
Found at i:1933 original size:243 final size:242
Alignment explanation
Indices: 1503--1986 Score: 693
Period size: 243 Copynumber: 2.0 Consensus size: 242
1493 TCTGACACTA
* * *
1503 GTACCTAGGAATAGTAGTGGGTTGGATATTTGCAATTATATTACATAATTTTAAATATACAAAAC
1 GTACCTAGGAATAGTAATGGGTTGGATATTTGCAATTATATTACATAAATCTAAATATACAAAAC
* * *
1568 TGTCTAAAAATATGAATTTATAAATTATTCAACTATTAATATTCAAATTTGAATTCGAATTAAGT
66 TGTCTAAAAATATGAATTTATAAATTATTCAACTATTAATATTCAAATCTGAATTCAAATTAAAT
* *** * * *
1633 ATCATTATCTTCCAAATATTTGATTTTGCAAGAAATCATAATTTAACATTTTTAATCATATGTCA
131 AGCATTATCTTCCAAATATCCAAGTTTGCAAGAAATCAGAATTTAACATTTTTAATCATACGTCA
*
1698 GATACTCAAATCTG-AAAG-TTCTTCTTGTAGATAGACTTTAATATT
196 AATACTCAAATCTGAAAAGTTTCTTCTTGTAGATAGACTTTAATATT
* * *
1743 GTACTTAGGAATAGTAATGGGTTGGATATTTGCAATTTTAATATTACATAAATCTAAATCTATAA
1 GTACCTAGGAATAGTAATGGGTTGGATATTTGCAA--TT-ATATTACATAAATCTAAATATACAA
* * * *
1808 ATCTGTCTAAAAATCTGAATTTGTAAATTATTCAAGTATTAATATTCAAATCTGAATTCAAATTA
63 AACTGTCTAAAAATATGAATTTATAAATTATTCAACTATTAATATTCAAATCTGAATTCAAATTA
*
1873 AATAGCATTATCTTCCAAATATCCAAGTTTGCAAGAAATTAGAATTTAACATTTTTAATCATACG
128 AATAGCATTATCTTCCAAATATCCAAGTTTGCAAGAAATCAGAATTTAACATTTTTAATCATACG
* *
1938 TCAAATATTCAAATTTGCAAAAAGTTTCTTCTTGTAGATAGACTTTAAT
193 TCAAATACTCAAATCTG--AAAAGTTTCTTCTTGTAGATAGACTTTAAT
1987 CAAATATCAT
Statistics
Matches: 213, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
240 33 0.15
242 2 0.01
243 150 0.70
246 4 0.02
247 24 0.11
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (242 bp):
GTACCTAGGAATAGTAATGGGTTGGATATTTGCAATTATATTACATAAATCTAAATATACAAAAC
TGTCTAAAAATATGAATTTATAAATTATTCAACTATTAATATTCAAATCTGAATTCAAATTAAAT
AGCATTATCTTCCAAATATCCAAGTTTGCAAGAAATCAGAATTTAACATTTTTAATCATACGTCA
AATACTCAAATCTGAAAAGTTTCTTCTTGTAGATAGACTTTAATATT
Found at i:3726 original size:9 final size:9
Alignment explanation
Indices: 3714--3747 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
3704 TTCTTTTTCA
3714 CTCAAATCT
1 CTCAAATCT
*
3723 CTCAACTCT
1 CTCAAATCT
3732 CTCAAA-CT
1 CTCAAATCT
3740 CTCAAATC
1 CTCAAATC
3748 CACTATCGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.32, C:0.38, G:0.00, T:0.29
Consensus pattern (9 bp):
CTCAAATCT
Found at i:3954 original size:15 final size:15
Alignment explanation
Indices: 3907--3966 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
3897 GGTAATACAA
*
3907 AAATTTAAATTTCATT
1 AAATTT-AATTTTATT
* *
3923 -AATTTGAATATTGTT
1 AAATTT-AATTTTATT
*
3938 AAATTTATTTTTATT
1 AAATTTAATTTTATT
*
3953 AATTTTAATTTTAT
1 AAATTTAATTTTAT
3967 ATTTTTTGTA
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
15 29 0.85
16 5 0.15
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (15 bp):
AAATTTAATTTTATT
Found at i:6009 original size:3 final size:3
Alignment explanation
Indices: 6001--6033 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
5991 ACTCTACGCT
6001 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
6034 AGATTCAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:6168 original size:3 final size:3
Alignment explanation
Indices: 6160--6221 Score: 63
Period size: 3 Copynumber: 20.7 Consensus size: 3
6150 TTTGCCACCT
* * * *
6160 CAC CAC CAC CAC CAC CACC CTC CTC CTC C-T CAC CAC CAC CAC CAC
1 CAC CAC CAC CAC CAC CA-C CAC CAC CAC CAC CAC CAC CAC CAC CAC
*
6205 CAC CAC CAC CAA CAC CA
1 CAC CAC CAC CAC CAC CA
6222 GCAACAGCAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
2 1 0.02
3 49 0.94
4 2 0.04
ACGTcount: A:0.29, C:0.65, G:0.00, T:0.06
Consensus pattern (3 bp):
CAC
Found at i:9202 original size:79 final size:79
Alignment explanation
Indices: 9071--9231 Score: 286
Period size: 79 Copynumber: 2.0 Consensus size: 79
9061 GTTTAGTTGG
*
9071 TTCATCATGGGGGCATTTTTCTTCATATTTGCTCAGATGAATGTGATTGTGGCAAACACTCTTGA
1 TTCATCACGGGGGCATTTTTCTTCATATTTGCTCAGATGAATGTGATTGTGGCAAACACTCTTGA
9136 TTCAGAGTGTTATC
66 TTCAGAGTGTTATC
9150 TTCATCACGGGGGCATTTTTCTTCATATTTGCTCAGATGAATGTGATTGTGGCAAACACTCTTGA
1 TTCATCACGGGGGCATTTTTCTTCATATTTGCTCAGATGAATGTGATTGTGGCAAACACTCTTGA
** *
9215 TTTGGGGTGTTATC
66 TTCAGAGTGTTATC
9229 TTC
1 TTC
9232 CAAATATTGT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40
Consensus pattern (79 bp):
TTCATCACGGGGGCATTTTTCTTCATATTTGCTCAGATGAATGTGATTGTGGCAAACACTCTTGA
TTCAGAGTGTTATC
Found at i:14674 original size:71 final size:71
Alignment explanation
Indices: 14595--14749 Score: 256
Period size: 71 Copynumber: 2.2 Consensus size: 71
14585 GAATTCTCTA
* **
14595 AAGCTTGTGTGAGTGGCATCGAATCACTGGATATCGATGGCTTGAGGTCCAACACTTGTGTGGAT
1 AAGCTTGTGTGAGTAGCATCGAATCACTGGATATCGATGGCTTGAGGTCCAACACTTGTGCAGAT
14660 TCTTTG
66 TCTTTG
*
14666 AAGCTTGTGTGAGTAGCATCGAATTACTGGATATCGATGGCTTGAGGTCCAACACTTGTGCAGAT
1 AAGCTTGTGTGAGTAGCATCGAATCACTGGATATCGATGGCTTGAGGTCCAACACTTGTGCAGAT
14731 TCTTTG
66 TCTTTG
* *
14737 ATGCTTATGTGAG
1 AAGCTTGTGTGAG
14750 CGTCATCAAA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (71 bp):
AAGCTTGTGTGAGTAGCATCGAATCACTGGATATCGATGGCTTGAGGTCCAACACTTGTGCAGAT
TCTTTG
Found at i:17179 original size:29 final size:29
Alignment explanation
Indices: 17099--17249 Score: 200
Period size: 29 Copynumber: 5.2 Consensus size: 29
17089 AGAATGAAGA
* * * *
17099 TTTTGGAGGTTCGGGGGT-AAATTAGAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGGAAT
17127 TTTTGGAAGTTTC-AGGGTAAAAAATGGAAT
1 TTTTGGAAG-TTCGAGGGT-AAAAATGGAAT
17157 TTTTGGAAGTTCGAGGGTAAAAATGGAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGGAAT
*
17186 TTTTGGAAGTTTTG-GGGTTAAAAATGGAAT
1 TTTTGGAAG-TTCGAGGG-TAAAAATGGAAT
17216 TTTTGGAAGTTCGAGGGTAAAAATGGAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGGAAT
17245 TTTTG
1 TTTTG
17250 AATAGTTTAG
Statistics
Matches: 110, Mismatches: 6, Indels: 13
0.85 0.05 0.10
Matches are distributed among these distances:
28 12 0.11
29 49 0.45
30 49 0.45
ACGTcount: A:0.31, C:0.03, G:0.30, T:0.36
Consensus pattern (29 bp):
TTTTGGAAGTTCGAGGGTAAAAATGGAAT
Found at i:17209 original size:59 final size:59
Alignment explanation
Indices: 17099--17249 Score: 232
Period size: 59 Copynumber: 2.6 Consensus size: 59
17089 AGAATGAAGA
* * * *
17099 TTTTGGAGGTTCGGGGGT-AAATTAGAATTTTTGGAAGTTTCAGGGTAAAAAATGGAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTCAGGGTAAAAAATGGAAT
** *
17157 TTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGGAAT
1 TTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTCAGGGTAAAAAATGGAAT
17216 TTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTG
1 TTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTG
17250 AATAGTTTAG
Statistics
Matches: 85, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
58 16 0.19
59 69 0.81
ACGTcount: A:0.31, C:0.03, G:0.30, T:0.36
Consensus pattern (59 bp):
TTTTGGAAGTTCGAGGGTAAAAATGGAATTTTTGGAAGTTTCAGGGTAAAAAATGGAAT
Found at i:17261 original size:29 final size:28
Alignment explanation
Indices: 17123--17261 Score: 179
Period size: 30 Copynumber: 4.7 Consensus size: 28
17113 GGGTAAATTA
17123 GAATTTTTGGAAGTTTCAGGGTAAAAAATG
1 GAATTTTTGGAAGTTT-AGGGT-AAAAATG
*
17153 GAATTTTTGGAAGTTCGAGGGTAAAAATG
1 GAATTTTTGGAAGTT-TAGGGTAAAAATG
*
17182 GAATTTTTGGAAGTTTTGGGGTTAAAAATG
1 GAATTTTTGGAAG-TTTAGGG-TAAAAATG
*
17212 GAATTTTTGGAAGTTCGAGGGTAAAAATG
1 GAATTTTTGGAAGTT-TAGGGTAAAAATG
*
17241 GAATTTTTGAATAGTTTAGGG
1 GAATTTTTGGA-AGTTTAGGG
17262 ACCTTCAGGG
Statistics
Matches: 97, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
29 47 0.48
30 50 0.52
ACGTcount: A:0.33, C:0.02, G:0.29, T:0.35
Consensus pattern (28 bp):
GAATTTTTGGAAGTTTAGGGTAAAAATG
Found at i:18342 original size:18 final size:16
Alignment explanation
Indices: 18310--18339 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18300 TTAATAATTA
18310 TTTAATAAATATTATC
1 TTTAATAAATATTATC
18326 TTTAATAAA-ATTAT
1 TTTAATAAATATTAT
18340 TATTATTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTAATAAATATTATC
Found at i:18346 original size:24 final size:24
Alignment explanation
Indices: 18319--18364 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
18309 ATTTAATAAA
*
18319 TATTATCTTTAATAAAATTATTAT
1 TATTATCATTAATAAAATTATTAT
*
18343 TATTATCATTAATGAAATTATT
1 TATTATCATTAATAAAATTATT
18365 TAATATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
TATTATCATTAATAAAATTATTAT
Found at i:19139 original size:6 final size:6
Alignment explanation
Indices: 19130--19202 Score: 82
Period size: 6 Copynumber: 12.7 Consensus size: 6
19120 ATTTTGAAAA
19130 TAAATT TAAATT TAAA-T TAAATT TAAATT TAAGA-T T-AATT TAAATT
1 TAAATT TAAATT TAAATT TAAATT TAAATT TAA-ATT TAAATT TAAATT
* * *
19176 CAAATT TAAA-A TAAATC TAAATT TAAA
1 TAAATT TAAATT TAAATT TAAATT TAAA
19203 ATAAAATTAA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
4 1 0.02
5 12 0.21
6 43 0.75
7 1 0.02
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (6 bp):
TAAATT
Found at i:19157 original size:23 final size:23
Alignment explanation
Indices: 19131--19213 Score: 89
Period size: 23 Copynumber: 3.6 Consensus size: 23
19121 TTTTGAAAAT
19131 AAATTTAAATTTAAA-TTAAATTT
1 AAATTTAAA-TTAAATTTAAATTT
*
19154 AAATTTAAGATT-AATTTAAATTC
1 AAATTTAA-ATTAAATTTAAATTT
* *
19177 AAATTTAAAATAAATCTAAATTT
1 AAATTTAAATTAAATTTAAATTT
* *
19200 AAAATAAAATTAAA
1 AAATTTAAATTAAA
19214 AAGGGGCCCG
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
22 4 0.08
23 45 0.90
24 1 0.02
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (23 bp):
AAATTTAAATTAAATTTAAATTT
Found at i:19202 original size:17 final size:17
Alignment explanation
Indices: 19116--19213 Score: 88
Period size: 17 Copynumber: 5.4 Consensus size: 17
19106 TTTTTGGACT
*
19116 TTTAATTTTGAAAATAAA
1 TTTAAATTT-AAAATAAA
*
19134 TTTAAATTTAAATTAAA
1 TTTAAATTTAAAATAAA
19151 TTTAAATTTAAGATTAATTTAAA
1 TTTAAATTT-A-A--AA--TAAA
*
19174 TTCAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
*
19191 TCTAAATTTAAAATAAA
1 TTTAAATTTAAAATAAA
*
19208 ATTAAA
1 TTTAAA
19214 AAGGGGCCCG
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
17 39 0.59
18 9 0.14
19 3 0.05
21 2 0.03
22 1 0.02
23 12 0.18
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
TTTAAATTTAAAATAAA
Found at i:19626 original size:37 final size:37
Alignment explanation
Indices: 19576--19646 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 37
19566 CATATCACTT
* * *
19576 GTTTTGATCCACTTCTCTGTGTTTCATCAGGAAGATG
1 GTTTTGATCCACTTCCCCGTATTTCATCAGGAAGATG
* *
19613 GTTTTGGTTCACTTCCCCGTATTTCATCAGGAAG
1 GTTTTGATCCACTTCCCCGTATTTCATCAGGAAG
19647 CTAACCATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.39
Consensus pattern (37 bp):
GTTTTGATCCACTTCCCCGTATTTCATCAGGAAGATG
Found at i:19937 original size:206 final size:206
Alignment explanation
Indices: 19573--20105 Score: 861
Period size: 206 Copynumber: 2.6 Consensus size: 206
19563 GACCATATCA
** * * ** * * *
19573 CTTGTTTTGATCCACTTCTCTGTGTT-TCATCAGGAAGATGGTTTTGGTTCACTTCCCCGTATTT
1 CTTGTTTCAATCCGCTTCTCTGT-TTCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCT
*
19637 CATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTTGGGT
65 CATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGT
* * * *
19702 TCGAAGATTTGCTCTCATCGAGTGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATTAGAAAG
130 TCAAACATTTGCTCTCATCAAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATTAGAAAG
19767 ATGACCGCATCG
195 ATGACCGCATCG
* * *
19779 CTTGTTTCAATCCGCTTCTCTGTTTCTCATCAGGAAGACGAATTTGGTCCCCTTCTCAATATCTC
1 CTTGTTTCAATCCGCTTCTCTGTTTCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTC
* *
19844 ATCAGTAAGCTAACCATTTTATTGCTTCAACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTT
66 ATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTT
*
19909 CAAACATTTGCTCTCATCAAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATTAGGAAGA
131 CAAACATTTGCTCTCATCAAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATTAGAAAGA
19974 TGACCGCATCG
196 TGACCGCATCG
*
19985 CTTGTTTCAATCCGCTTCTCTGTTTCTCATCAGAAAGACGAATTTGGTTCACTTCTCAGTATCTC
1 CTTGTTTCAATCCGCTTCTCTGTTTCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTC
20050 ATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAA
66 ATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAA
20106 AATGACCGCA
Statistics
Matches: 300, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
205 2 0.01
206 298 0.99
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (206 bp):
CTTGTTTCAATCCGCTTCTCTGTTTCTCATCAGGAAGACGAATTTGGTTCACTTCTCAGTATCTC
ATCAGGAAGCTAACCATTTTATTGCTTCGACCTGCTTCTCAGTATCTCATCAGGAAGCTGGGGTT
CAAACATTTGCTCTCATCAAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTATCTCATTAGAAAGA
TGACCGCATCG
Done.