genome.fa.s14691.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014691.1 Kokia drynarioides strain JFW-HI SEQ_129730, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192550

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39--69	2	16.0	2	93	6	55	51	0	0	48	1.00
1565--1596	16	1.9	17	93	6	57	59	0	0	40	0.97
1922--1955	2	16.5	2	87	6	50	47	0	5	47	1.26
5596--5712	58	2.0	58	96	0	216	43	14	11	29	1.81
7103--7166	29	2.2	28	81	13	76	26	0	6	67	1.14
7708--7784	30	2.6	30	89	8	129	29	12	1	55	1.45
11607--11657	21	2.4	22	87	9	79	52	3	7	35	1.49
11621--11664	21	2.1	21	91	0	70	54	4	11	29	1.56
11751--11805	24	2.3	24	78	12	60	50	0	1	47	1.11
18589--18622	15	2.4	14	90	9	52	73	17	0	8	1.08
22193--23665	366	4.0	365	90	2	2295	29	26	17	26	1.98
22193--23665	735	2.0	735	91	1	2400	29	26	17	26	1.98
23653--24157	126	4.0	127	94	1	872	37	20	10	31	1.87
23653--24157	253	2.0	253	93	1	870	37	20	10	31	1.87
24607--24637	6	5.2	6	100	0	62	0	0	51	48	1.00
27703--27770	34	2.0	34	100	0	136	38	14	2	44	1.61
43678--43761	29	2.8	30	89	1	125	46	15	7	30	1.73
53800--53832	15	2.2	15	100	0	66	48	12	6	33	1.65
56962--57073	60	1.9	59	83	12	149	27	16	17	38	1.91
57111--57232	59	2.0	61	85	4	169	29	16	16	37	1.91
57291--57438	61	2.5	61	81	7	178	39	13	15	31	1.86
67415--67479	30	2.2	31	86	5	89	49	10	1	38	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69203--69255	3	17.7	3	84	7	72	66	5	0	28	1.15
71582--71639	29	2.0	29	100	0	116	44	10	3	41	1.55
74818--74881	25	2.8	23	71	13	60	45	6	1	46	1.37
78951--79049	32	3.1	32	78	10	112	41	5	9	44	1.58
80905--80967	28	2.2	28	97	0	117	41	3	4	50	1.39
87203--87371	84	2.0	85	97	1	322	27	21	11	39	1.87
88017--89269	618	2.0	625	94	2	2196	38	10	12	38	1.79
96045--96181	71	1.9	71	92	2	231	36	6	23	33	1.81
96108--96297	82	2.3	82	80	5	220	38	6	18	35	1.78
96419--96661	109	2.2	109	88	2	364	29	14	16	39	1.88
122726--122752	2	13.5	2	100	0	54	51	0	0	48	1.00
124796--124837	22	1.9	22	90	0	66	52	7	2	38	1.42
125969--126017	10	5.5	10	73	26	56	32	42	6	18	1.75
125968--126020	17	3.1	17	97	0	97	32	45	5	16	1.71
128774--128841	31	2.2	31	89	2	102	39	13	13	33	1.83
129761--129953	96	2.0	96	81	12	227	34	12	22	30	1.92
130299--130439	29	4.8	30	76	11	157	28	3	31	36	1.74
130299--130453	59	2.6	59	92	3	249	29	3	32	35	1.73
131457--131495	19	2.1	19	90	9	62	38	2	0	58	1.12
132028--132079	22	2.4	22	100	0	104	11	13	53	21	1.70
132446--132496	24	2.1	24	86	13	70	47	13	9	29	1.75
133034--133067	15	2.2	16	89	5	52	32	2	0	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133305--133335	13	2.4	13	94	0	53	54	6	12	25	1.62
133336--133411	26	2.8	27	73	15	75	23	9	2	64	1.36
133686--134077	198	2.0	196	94	1	694	39	11	13	35	1.80
141177--141317	59	2.4	58	83	3	158	24	16	15	43	1.86
142242--142278	18	2.0	19	89	5	58	62	0	0	37	0.96
146119--146185	31	2.2	31	91	0	107	46	13	7	32	1.71
151557--151599	17	2.6	16	82	13	52	46	2	6	44	1.43
151739--151815	29	2.7	28	78	6	82	31	5	3	59	1.37
152533--152601	31	2.2	31	100	0	138	30	26	13	30	1.93
155413--155439	2	13.5	2	100	0	54	51	0	0	48	1.00
155436--156904	431	3.4	428	87	5	1997	36	18	15	29	1.92
155649--156904	215	5.9	211	87	5	1726	36	18	15	29	1.92
155443--156904	646	2.3	641	87	6	2110	36	18	15	29	1.92
157807--157837	16	1.9	16	100	0	62	83	0	16	0	0.64
163559--163627	31	2.2	31	84	5	95	34	8	10	46	1.69
164988--165035	21	2.3	21	81	0	60	68	10	8	12	1.39
165862--165893	17	1.9	16	93	6	55	34	0	0	65	0.93
172074--172336	132	2.0	132	100	0	526	22	12	16	47	1.81
189018--189056	16	2.5	15	84	12	51	46	0	0	53	1.00
191544--191669	23	5.5	23	82	7	111	42	23	21	11	1.86

Tables:   1

The End!