genome.fa.s14693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014693.1 Kokia drynarioides strain JFW-HI SEQ_129732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  256866

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184--222	18	2.2	18	90	0	60	15	53	5	25	1.62
70--242	90	1.9	90	84	0	229	19	54	6	19	1.64
231--265	18	1.9	18	88	0	52	20	51	5	22	1.68
307--353	18	2.6	18	82	0	58	23	55	4	17	1.59
2414--2592	94	1.9	94	82	0	223	30	21	18	29	1.97
5508--5545	19	2.0	19	89	0	58	42	2	2	52	1.29
6780--6812	2	16.5	2	100	0	66	51	0	0	48	1.00
18712--18749	19	2.0	19	89	0	58	36	0	2	60	1.11
38815--38966	23	6.5	23	77	12	141	44	21	22	11	1.83
38866--38965	25	4.2	25	69	21	79	45	21	23	11	1.83
38815--38966	71	2.2	69	84	7	200	44	21	22	11	1.83
40091--40127	19	1.9	19	100	0	74	10	27	0	62	1.28
42442--42504	29	2.2	28	81	16	76	49	0	0	50	1.00
42442--42503	26	2.3	29	78	13	69	50	0	0	50	1.00
50460--50491	5	6.4	5	100	0	64	0	81	18	0	0.70
52388--52428	21	2.0	21	85	9	57	60	4	4	29	1.38
52934--52994	31	2.0	31	90	0	95	54	9	0	36	1.34
54281--54336	29	1.9	29	82	7	69	33	12	1	51	1.50
67020--67048	2	14.5	2	100	0	58	48	0	0	51	1.00
70709--70742	15	2.4	14	90	5	50	2	8	47	41	1.50
78588--78641	26	2.1	26	82	6	65	44	0	11	44	1.39
84016--84092	32	2.5	31	79	10	86	66	7	0	25	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87322--87389	28	2.4	28	100	0	136	35	0	17	47	1.48
87322--87407	28	3.1	28	89	3	102	34	1	15	48	1.52
89955--89982	13	2.2	13	100	0	56	50	0	0	50	1.00
89974--90011	17	2.3	17	90	4	60	57	2	0	39	1.12
90781--90814	17	2.0	17	94	0	59	52	2	0	44	1.16
91061--91101	19	2.2	19	95	0	73	34	31	34	0	1.58
97531--97561	14	2.2	14	94	0	53	45	6	25	22	1.76
99209--99249	15	2.6	16	77	14	50	29	7	0	63	1.21
100628--100738	31	3.6	31	78	8	104	37	11	9	40	1.75
100881--100961	29	2.6	30	77	9	76	49	11	4	34	1.60
106008--106049	21	2.0	20	86	4	57	57	0	2	40	1.12
123243--123268	13	2.0	13	100	0	52	46	0	23	30	1.53
125062--125121	32	1.9	31	93	3	102	53	0	5	41	1.23
131049--131233	61	3.0	60	84	8	232	28	19	14	37	1.91
131215--131437	61	3.7	60	78	11	226	39	14	18	27	1.90
131242--131437	61	3.3	58	80	10	227	37	15	20	26	1.92
135448--135479	16	1.9	17	93	6	57	65	0	0	34	0.93
137422--137452	4	7.8	4	100	0	62	48	25	0	25	1.52
145037--145064	2	14.0	2	100	0	56	50	0	0	50	1.00
147935--147970	11	3.3	11	88	11	56	25	5	2	66	1.27
147934--147974	11	3.6	11	83	3	55	24	4	2	68	1.22
148590--148652	27	2.3	27	72	0	63	46	4	4	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171951--172080	23	5.7	23	80	6	124	44	20	22	13	1.85
171951--172080	46	2.8	46	80	7	149	44	20	22	13	1.85
178576--178601	7	3.7	7	100	0	52	0	11	0	88	0.52
182980--183015	18	1.9	19	88	5	56	47	0	2	50	1.15
183016--183093	30	2.5	30	78	14	79	57	2	2	37	1.26
189806--190038	118	2.0	118	92	0	385	30	9	21	38	1.86
197733--197777	18	2.6	18	79	13	58	64	0	0	35	0.94
197733--197782	16	2.9	17	82	11	57	64	0	2	34	1.05
200406--200587	90	2.0	92	93	3	316	43	13	2	40	1.58
201001--201058	26	2.2	26	84	6	73	62	1	1	34	1.16
201430--201463	16	2.3	14	90	10	50	38	0	2	58	1.13
203578--203639	29	2.2	29	85	2	81	30	3	0	66	1.08
203588--203641	22	2.6	20	78	18	65	31	1	0	66	1.02
212225--212273	22	2.2	23	85	3	64	12	8	8	71	1.31
213797--213983	94	2.0	94	81	8	220	48	14	6	29	1.71
218765--219336	45	13.2	45	76	9	403	43	15	26	15	1.86
218949--219222	87	3.1	87	79	7	336	41	16	25	15	1.88
218910--219336	177	2.4	176	83	5	508	43	15	25	15	1.86
220382--220433	26	2.0	26	100	0	104	23	11	15	50	1.76
237888--237935	26	1.9	25	83	8	62	20	2	18	58	1.49
246364--246401	19	2.0	20	89	5	60	60	0	5	34	1.19

Tables:   1

The End!