genome.fa.s14699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014699.1 Kokia drynarioides strain JFW-HI SEQ_129738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35948

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1831--2014	97	1.9	95	81	8	221	35	14	20	29	1.92
2228--2292	29	2.2	29	83	5	78	24	6	32	36	1.80
2275--2467	30	6.6	29	83	4	228	34	0	27	37	1.61
2275--2467	29	6.5	30	83	3	232	34	0	27	37	1.61
2275--2471	59	3.3	59	86	4	245	35	0	27	36	1.61
2275--2494	59	3.8	57	82	9	228	35	1	27	36	1.66
2275--2494	88	2.5	88	83	5	187	35	1	27	36	1.66
2329--2494	29	5.7	28	74	14	84	34	1	27	36	1.68
3469--3493	13	1.9	13	100	0	50	0	8	24	68	1.16
3703--3749	10	4.7	10	82	10	60	48	0	0	51	1.00
3699--3733	13	2.8	12	87	8	52	45	0	0	54	0.99
3698--3759	16	4.0	16	71	26	53	45	1	0	53	1.10
3705--3750	19	2.3	19	88	7	65	47	0	0	52	1.00
4475--4499	13	1.9	13	100	0	50	24	4	24	48	1.68
4511--4579	6	12.0	6	75	14	65	53	1	0	44	1.09
4517--4579	17	3.7	17	89	0	99	53	1	0	44	1.10
5710--5751	18	2.4	17	81	14	50	30	26	16	26	1.97
6896--6934	20	2.0	20	90	5	62	53	7	0	38	1.30
6885--6933	19	2.5	19	81	18	57	53	8	0	38	1.31
7130--7159	9	3.3	9	95	0	51	46	3	10	40	1.54
7235--7292	19	3.0	19	80	7	64	53	5	0	41	1.23
12627--12682	26	2.2	24	78	12	60	62	3	0	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13718--13798	42	1.9	42	97	0	153	19	0	22	58	1.40
13723--13811	42	2.1	42	87	0	124	23	1	19	56	1.49
23283--23336	24	2.4	21	80	14	63	68	3	1	25	1.16
29387--29579	97	2.0	96	82	8	232	35	15	20	28	1.93
29808--29873	28	2.3	28	81	5	78	31	3	34	30	1.73
29808--30364	59	9.5	59	84	3	606	32	4	29	33	1.77
29805--30343	29	18.4	29	75	9	398	33	4	30	32	1.77

Tables:   1

The End!