Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000147.1 Kokia drynarioides strain JFW-HI SEQ_110804, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 780

Length: 1300
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.25

Warning! 306 characters in sequence are not A, C, G, or T


Found at i:1267 original size:24 final size:26

Alignment explanation


    Indices: 1240--1287  Score: 66
    Period size: 24  Copynumber: 1.9  Consensus size: 26

       1230 AGAGAAATGT

                                       
       1240 AAATG-TGATATATGA-A-ATTATGAG
          1 AAATGATGA-ATATGAGAGATTATGAG

                                    
       1264 AAATGATGAATATGAGAGATTATG
          1 AAATGATGAATATGAGAGATTATG

       1288 CCCATGTAAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  24   11  0.52
  25    4  0.19
  26    6  0.29

ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31


Consensus pattern (26 bp):   
AAATGATGAATATGAGAGATTATGAG

Done.