Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014704.1 Kokia drynarioides strain JFW-HI SEQ_129743, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20401
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Found at i:475 original size:216 final size:216
Alignment explanation
Indices: 1--4361 Score: 4152
Period size: 216 Copynumber: 20.2 Consensus size: 216
* * *
1 AGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCACAAGGTT-TTTACAAAATG
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATG
* * * * ** **
65 ACAAACTATTTAGACCGAATCATACGATTTCCCGAGCATGGAATGTTTTAAAAATTGCACAAAGG
65 ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGG
* * * * ** *
130 AATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGAA
130 AATGGATCGTCTTGAATACT-TTAAGGAACCGAAG-T-T-ATAAAAGAACTCGTAAAAGTTTGAC
* *
194 AAGTTTGAAAGTTAATCCAAGAACCA
191 AAGTTCGAAAGTTCATCCAAGAACCA
* * * * * * *
220 AGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATG
1 AGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * **
284 ACAAACTATTTTA-ATCAAATGATGCAATTTTTCGAGAATGGAATGTTCGAAAAATTGGTTGAAG
65 ACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAG
* * * * ** *
348 GAATGCATCTTCTTAAATACTATT-AGGAACCGAAGTTATAAAAGAACTTGTAAATTTTTGAAAA
129 GAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* **
412 GTTCGGAAGTTCATCCAAGAACTG
193 GTTCGAAAGTTCATCCAAGAACCA
* *
436 GGAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* *
501 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAA-TGGCTCAAATG
66 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGG-TCAAAGG
* * * *
565 AATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGT
130 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
630 TCGTAAGTTCGTCCGAGAACCA
195 TCGAAAGTTCATCCAAGAACCA
* * *
652 AGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCTAAA-TT-TTCTGACAAAAT
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT-T-ACAAAAT
*
715 CACAAACTATTTAGACCGAAA-GATGCGATTT-TCTGAGCATGGAATGTTC-AGAAAA-TGGCTC
64 GACAAACTATTTAGACC-AAATGATGCGATTTCTC-GAGCATGGAATGTTCGA-AAAATTGG-TC
* * * *
776 AAAGGAATGGA-CAGTCTTGAAAACTTTGAGGAACCAAAGTGATAAAAGAACTCGTAAAAGTATT
125 AAAGGAATGGATC-GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT-TT
* * * *
840 -ACTAGTTCGTAAGTTCGTCCTAGAACCA
188 GACAAGTTCGAAAGTTCATCCAAGAACCA
* * * * * *
868 CA-AGAGAAACAATTCTCACGTAAATAGGTTTTAAATTCGATGACTAAAAGTTGTTTACATAATG
1 -AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * * * * * * *
932 ACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAACATGGAAAGTTCAAAAAAATGGTCGAAGG
65 ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGG
* * * * * * ** * *
996 AATGGATCGTCTTGAGTACTCTCAGGAACCTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAG
130 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAG
* * *
1060 TACGGAAGTTCATCCAAAAACCA
194 TTCGAAAGTTCATCCAAGAACCA
* * * * * *
1083 TGAGAGAAACATTTCTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAAATTGTTTAGAAAATTA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * **
1148 TAACCTATTTAGACCAAATGATGTC-ATTTCTTGAGAATGGAATGCTT-GAAAAATTGCACAAAG
66 CAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTCGAAAAATTGGTCAAAG
* * * * * *
1211 GAATGGATCATCTTTAATAGTTTATGGAACCGAAGTTATAAAGGAACTGGTAAAAAGTTTGACAA
129 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAAGTTTGACAA
* **
1276 GTT-TAGAAGTTTGTCCAAGAACCA
193 GTTCGA-AAGTTCATCCAAGAACCA
* * * * * *
1300 AGAGAGAAACAATTGTCAAGTAAAT-A-TTTTTTATTCAAAGACGAAAAGTTGATTACAGAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * *
1363 AAAACTATTTAGGCCAAATGATGCGATTTCCCAAG-AGTAGAATGTTCGAAAAATTGCTCAAAGG
66 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCA-TGGAATGTTCGAAAAATTGGTCAAAGG
* ** **
1427 ATTGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTCACAAAA-TCTTGACAAG
130 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGT-TTGACAAG
* * *
1491 CTCGAAAGTTCAGCCAAGAACAA
194 TTCGAAAGTTCATCCAAGAACCA
* * * * **
1514 AGAGAGAAATAGTTCTCACGTAAATAAGTTTTTGATTCAAAGAGCAAAAGTTGTTTATGAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * *
1579 CAAACTATTTAGACCAAATAATGCGATTT-TCAGAGCATTGAATGTTCGAAAAACTGGTCGAAGG
66 CAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGAAAAATTGGTCAAAGG
* *
1643 -ATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
130 AAT-GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
* * *
1707 CTCGGAAGTTCATCCAAAAACCA
194 TTCGAAAGTTCATCCAAGAACCA
* * * * * * *
1730 AGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATG
1 AGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * **
1794 ACAAACTATTTTA-ACCAAATGATGCAATTTTTCGAGAATGGAATGTTCGAAAAATTGGTTGAAG
65 ACAAACTA-TTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAG
* * * * * ** *
1858 GAATGCATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGAACTTGTAAATTTTTGAAAA
129 GAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
* **
1922 GTTCGAAAGGTCATCCAAGAATTA
193 GTTCGAAAGTTCATCCAAGAACCA
* * *
1946 GGAGAGAAACAATTCTCACGTAAATAA-TTTTTAATTCAAAGACTAAGAGTTGTTTACAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * *
2010 CAAACTATTTAGACCAAATAATGCGATTTCTCGAGCATGGAATGCTCGAAAAA-TGGCTCAAATG
66 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGG-TCAAAGG
* * * * * * *
2074 AAAGGATAGTCTTGAAGACTTTAAGGAACCAAAGCTGTAAAAGAACTCGTAAAAGTTTGACTAGT
130 AATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
2139 TCGTAAGTTCGTCCGAGAACCA
195 TCGAAAGTTCATCCAAGAACCA
* * * *
2161 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAGGACCAAAATTTGTTTACAAAATCA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* *
2226 CAAACTATTTAGACCGGAA-GATGCGATTTC-CGGAGCATGGAATGTT-TAGAAAA-TGGCTCAA
66 CAAACTATTTAGACC-AAATGATGCGATTTCTC-GAGCATGGAATGTTCGA-AAAATTGG-TCAA
* * *
2287 AGGAATGGA-CAGTCTTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGAC
127 AGGAATGGATC-GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * * *
2351 TAGTTTGTAAGTTCATCCTAGAACCA
191 AAGTTCGAAAGTTCATCCAAGAACCA
* * * * *
2377 CA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATATTG
1 -AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * * **
2441 ACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAAACTTCGAAAAATTGGTCGAAA-
65 ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTC-AAAG
* * * ** ** * * ** *
2504 GAATGGATCGTCTTGAGTACTCTCAGGAACTTAAGTTGCAGAAGAGCTATTAAATGTTTCG-CAA
129 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTT-GACAA
* * **
2568 GTACGGAAGTTTGTCCAAGAACCA
193 GTTCGAAAGTTCATCCAAGAACCA
* * *
2592 TGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * *
2657 TAACCTACTCAGACCAAATTATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATT-GTACAAA
66 CAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTCGAAAAATTGGT-CAAA
** * *
2719 GGAATGGATCACCTTTAATAGTTTAAGGAACC-AATGTTAT-AAAGAAACT-GATAAAAAGTTTG
128 GGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTATAAAAG-AACTCG-T-AAAAGTTTG
* *
2781 ACAAGTTCGAAAGTTCAGCCAAGAACAA
189 ACAAGTTCGAAAGTTCATCCAAGAACCA
* * * *
2809 AGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGT
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * ** * * * *
2874 CAAACTATTTAGACCAAATAATGCGATTT-TCCAATATTGAAAGTTCGAAAAACTGGTCGAAGG-
66 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGA
* * * * * * * * *
2937 ATAGGACCGGCTGGAATAATTTAAGGAACCGATGTTATAAAAGAACTCATAAAAGTTTGATATGC
131 AT-GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
3002 TCCAAAGTTCAGCCAAGAACAAA
195 TCGAAAGTTCATCCAAGAAC-CA
* * *
3025 AGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* ** * **
3090 TAGCCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTGCACAAAG
66 CAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTCGAAAAATTGGTCAAAG
** * * * * * *
3153 GAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAACTAAGAAAAAGTTTGAGAA
129 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT-CGTAAAAGTTTGACAA
* **
3218 GTTCGAAAGTTCAGCCAAGAAAAA
193 GTTCGAAAGTTCATCCAAGAACCA
* * ** *
3242 AGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAAGTGCAAAAGTTGTTTACGAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * *
3307 CAAACTATTTAGACCAAATAATACGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-
66 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGA
* * * *
3371 ATAGGATCGGCTTGAATAATTTAAGGAACGGAAGTTATAAAAGAACTCGTAAAAGCTTGACAAGT
131 AT-GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGT
* * *
3436 TCGAAAGTTTAGCCAAGAACAA
195 TCGAAAGTTCATCCAAGAACCA
* * *
3458 AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* ** * **
3523 TAGCCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTGCACAAAG
66 CAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTCGAAAAATTGGTCAAAG
** * * * * *
3586 GAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAACTGAGAAAAAGTTTGACAA
129 GAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT-CGTAAAAGTTTGACAA
* *
3651 GTTCGAAAGTTCAGCCAAGAACAA
193 GTTCGAAAGTTCATCCAAGAACCA
* * *
3675 AGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * * * *
3740 CAAACTATTTAGACCAAATAATGCGATTTTTCAAACATTGAATAATT-GAAAAACTT-GTCGAAT
66 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAAT-GTTCGAAAAA-TTGGTCAAAG
* * * * *
3803 G-ATAGGATTGGCTTGAATAATTTAAGGAACCGAAGTTCTAAAAGAACTGGTAAATA-TTTGACA
129 GAAT-GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACA
*
3866 AGTTCTG-AAGTTCGTCCAAGAACCA
192 AGTTC-GAAAGTTCATCCAAGAACCA
* * * *
3891 AGAGAGAAACAATCCTC-CTGTAAATAAGTTTTTAATTCAAAGGCCGAAAGGTT-TTTTCAAAAT
1 AGAGAGAAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAAT
* * **
3954 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCACAAAG
64 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAG
* * * * **
4019 GAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGA
129 GAATGGATCGTCTTGAATACT-TTAAGGAACCGAAG-T-T-ATAAAAGAACTCGTAAAAGTTTGA
* * *
4083 AAAGTTTGAAAGTTAATCCAAGAACCA
190 CAAGTTCGAAAGTTCATCCAAGAACCA
* * * * * * *
4110 AGAGAGAAA-ATATTCTCATGAAAATAAATTTTAAATTCAAACACCAAAAAGTTGTTTACCATAT
1 AGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAAT
* * * * **
4174 TACAAACTATTTTGACCAAATGATGCAATTT-TCCGAGAATGGAATGTTCGAAAAATTGGTTGAA
64 GACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTTCGAAAAATTGGTCAAA
* * * * * * * ** *
4238 GGAATGCATCTTGTTAAATACTATT-AGGAACCAAAGTTATAAAAGAAGTTGTAAATTTTTGAAA
128 GGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* **
4302 AGTTCGGAAGTTCATCCAAGAACTG
192 AGTTCGAAAGTTCATCCAAGAACCA
* *
4327 GGAGAGAAACAATTCTCACGTAAATAAATTTTTAA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
4362 GGAACCGAAG
Statistics
Matches: 3394, Mismatches: 629, Indels: 240
0.80 0.15 0.06
Matches are distributed among these distances:
213 1 0.00
214 64 0.02
215 677 0.20
216 1639 0.48
217 666 0.20
218 51 0.02
219 204 0.06
220 92 0.03
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGA
ATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTT
CGAAAGTTCATCCAAGAACCA
Found at i:1212 original size:431 final size:429
Alignment explanation
Indices: 1--4361 Score: 3801
Period size: 431 Copynumber: 10.1 Consensus size: 429
* * *
1 AGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCACAAGGTT-TTTACAAAATG
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATG
* * * * ** * **
65 ACAAACTATTTAGACCGAATCATACGATTTCCCGAGCATGGAATGTTTTAAAAATTGCACAAAGG
65 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAACATGGAATGTTCGAAAAAATGGTCAAAGG
* * * *
130 AATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGAA
130 AATGGATCGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTT-TAAATGTTTGAC
* * * * * *
194 AAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTC
190 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTC
* * * * * *
258 AAACACCAAAAGTTGTTTACCATATGACAAACTATTTTA-ATCAAATGATGCAATTTTTCGAGAA
254 AAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTAGACCAAATGATGCGATTTTT-GAGCA
* ** * *
322 TGGAATGTTCGAAAAATTGGTTGAAGGAATGCATC-TTCTT-AAATACTATTAGGAACCGAAGTT
317 TGGAATGTT-GAAAAATTGCTCAAAGGAATGGATCAGTCTTGAAA-ACT-TTAGGAACCGAAGTT
* ** * * **
385 ATAAAAGAACTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTG
379 ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
* *
436 GGAGAGAAAAAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * *
501 CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCG-GAAAATGGCTCAAATG
66 CAAACTATTTAGACCAAATGATGCGATTTCCCGAACATGGAATGTTCGAAAAAATGG-TCAAAGG
* * * * *
565 AATGGATAGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGT
130 AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-TTAAATGTTTGACAAGT
* * * * *
630 TCGTAAGTTCGTCCGAGAACCAAGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGA
194 TCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* *
695 CCTAAA-TT-TTCTGACAAAATCACAAACTATTTAGACCGAAA-GATGCGATTTTCTGAGCATGG
259 CCAAAAGTTGTT-T-ACAAAATGACAAACTATTTAGACC-AAATGATGCGATTTT-TGAGCATGG
* * * *
757 AATGTTCAGAAAATGGCTCAAAGGAATGGA-CAGTCTTGAAAACTTTGAGGAACCAAAGTGATAA
320 AATGTTGA-AAAATTGCTCAAAGGAATGGATCAGTCTTGAAAACTTT-AGGAACCGAAGTTATAA
* * *
821 AAGAACTCGTAAAAGTATT-ACTAGTTCGTAAGTTCGTCCTAGAACCA
383 AAGAACTCGTAAAAGT-TTGACAAGTTCGGAAGTTCGTCCAAGAACCA
* * * * * *
868 CA-AGAGAAACAATTCTCACGTAAATAGGTTTTAAATTCGATGACTAAAAGTTGTTTACATAATG
1 -AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* * * * * * *
932 ACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAACATGGAAAGTTCAAAAAAATGGTCGAAGG
65 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAACATGGAATGTTCGAAAAAATGGTCAAAGG
* * * * * * *
996 AATGGATCGTCTTGAGTACTCTCAGGAACCTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAG
130 AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-TTAAATGTT-TGACAAG
* * * * *
1060 TACGGAAGTTCATCCAAAAACCATGAGAGAAACATTTCTCACGTAAATAAGTTTTTAATTCAAAG
193 TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * * *
1125 GCCAAAAATTGTTTAGAAAATTATAACCTATTTAGACCAAATGATGTC-ATTTCTTGAGAATGGA
258 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTT-TTGAGCATGGA
* * * *
1189 ATGCTTGAAAAATTGCACAAAGGAATGGATCA-TCTTTAATAGTTTATGGAACCGAAGTTATAAA
321 ATG-TTGAAAAATTGCTCAAAGGAATGGATCAGTCTTGAAAACTTTA-GGAACCGAAGTTATAAA
* * ** *
1253 GGAACTGGTAAAAAGTTTGACAAGTTTAGAAGTTTGTCCAAGAACCA
384 AGAACTCGT-AAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
* * * * * *
1300 AGAGAGAAACAATTGTCAAGTAAAT-A-TTTTTTATTCAAAGACGAAAAGTTGATTACAGAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * *
1363 AAAACTATTTAGGCCAAATGATGCGATTTCCC-AAGAGTAGAATGTTCGAAAAATTGCTCAAAGG
66 CAAACTATTTAGACCAAATGATGCGATTTCCCGAACA-TGGAATGTTCGAAAAAATGGTCAAAGG
* *** ** *
1427 ATTGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTCACAAAAT-CTTGACAAG
130 AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT--TTAAATGTTTGACAAG
* * * * * *
1491 CTCGAAAGTTCAGCCAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTGATTCAAAG
193 TTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAG
* ** * * *
1556 AGCAAAAGTTGTTTATGAAATGACAAACTATTTAGACCAAATAATGCGATTTTCAGAGCATTGAA
258 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTT-TGAGCATGGAA
* * * *
1621 TGTTCGAAAAACTGGTCGAAGG-ATAGGATC-GGCTTGAATAA-TTTAAGGAACCGAAGTTATAA
322 TGTT-GAAAAATTGCTCAAAGGAAT-GGATCAGTCTTGAA-AACTTT-AGGAACCGAAGTTATAA
* * *
1683 AAGAACTCGTAAAAGTTTGACAAGCTCGGAAGTTCATCCAAAAACCA
383 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
* * * * * * *
1730 AGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATG
1 AGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
* ** * **
1794 ACAAACTATTTTA-ACCAAATGATGCAATTTTTCGAGA-ATGGAATGTTCGAAAAATTGGTTGAA
65 ACAAACTA-TTTAGACCAAATGATGCGATTTCCCGA-ACATGGAATGTTCGAAAAAATGGTCAAA
* * * * *
1857 GGAATGCATCTTCTTAAATACTATT-AGGAACCAAAGTTATAAAAGAACTTGTAAATTTTTGAAA
128 GGAATGGATCGTCTTGAATACT-TTAAGGAACCAAAGTTATAAAAGAACTT-TAAATGTTTGACA
* ** *
1921 AGTTCGAAAGGTCATCCAAGAATTAGGAGAGAAACAATTCTCACGTAAATAA-TTTTTAATTCAA
191 AGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * *
1985 AGACTAAGAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTCTCGAGCATGG
256 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT-TTGAGCATGG
* * * * * * * *
2050 AATGCTCGAAAAATGGCTCAAATGAAAGGAT-AGTCTTGAAGACTTTAAGGAACCAAAGCTGTAA
320 AATG-TTGAAAAATTGCTCAAAGGAATGGATCAGTCTTGAAAACTTT-AGGAACCGAAGTTATAA
* * *
2114 AAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCCGAGAACCA
383 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
* * * *
2161 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAGGACCAAAATTTGTTTACAAAATCA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * *
2226 CAAACTATTTAGACCGGAA-GATGCGATTTCCGGAGCATGGAATGTT-TAGAAAATGGCTCAAAG
66 CAAACTATTTAGACC-AAATGATGCGATTTCCCGAACATGGAATGTTCGAAAAAATGG-TCAAAG
* * * * *
2289 GAATGGA-CAGTCTTGAATACTTTGAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTCGACTA
129 GAATGGATC-GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT-TTAAATGTTTGACAA
* * * * *
2353 GTTTGTAAGTTCATCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGA
192 GTTCGAAAGTTCATCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* * * * * * * ***
2417 AGACTAAAAGTTGTTTACATATTGACAAAGTTTTTAGACCGAATGATACGATTCCCGAGCATGGA
256 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTGAGCATGGA
** * ** * ** ** *
2482 AACTTCGAAAAATTGGTCGAAA-GAATGGATC-GTCTTGAGTACTCTCAGGAACTTAAGTTGCAG
321 ATGTT-GAAAAATTGCTC-AAAGGAATGGATCAGTCTTGAAAACT-TTAGGAACCGAAGTTATAA
* ** * * *
2545 AAGAGCTATTAAATGTTTCG-CAAGTACGGAAGTTTGTCCAAGAACCA
383 AAGAACTCGTAAAAGTTT-GACAAGTTCGGAAGTTCGTCCAAGAACCA
* * *
2592 TGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * * ** *
2657 TAACCTACTCAGACCAAATTATGTC-ATTTCTCGGGCATGGAATGCTT-G-AAAAATTGTACAAA
66 CAAACTATTTAGACCAAATGATG-CGATTTCCCGAACATGGAATG-TTCGAAAAAATGGT-CAAA
** * * * * *
2719 GGAATGGATCACCTTTAATAGTTTAAGGAACCAATGTTAT-AAAGAAACTGATAAAAAGTTTGAC
128 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG-AACT--TTAAATGTTTGAC
* * *
2783 AAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCA
190 AAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
* * * * ** ** *
2848 AAGAGCAAAAGTTGTTTACGAAATGTCAAACTATTTAGACCAAATAATGCGATTTTCCAATATTG
255 AAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTGAGCATGG
* * * * * * * *
2913 AAAGTTCGAAAAACTGGTCGAAGG-ATAGGA-CCGGCTGGAATAA-TTTAAGGAACCGATGTTAT
320 AATGTT-GAAAAATTGCTCAAAGGAAT-GGATCAGTCTTGAA-AACTTT-AGGAACCGAAGTTAT
* * * * ** *
2975 AAAAGAACTCATAAAAGTTTGATATGCTCCAAAGTTCAG-CCAAGAACAAA
381 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC-GTCCAAGAAC-CA
* * *
3025 AGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* ** * ** * **
3090 TAGCCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTGCACAAAG
66 CAAACTATTTAGACCAAATGATG-CGATTTCCCGAACATGGAATG-TTCGAAAAAATGGTCAAAG
** * * * * ** * *
3153 GAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAACTAAGAAAAAGTTTGAGAA
129 GAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT--TTAAATGTTTGACAA
* ** * *
3218 GTTCGAAAGTTCAGCCAAGAAAAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAA
192 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
** * * * *
3283 GTGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAATACGATTTTTCGAGCATTGA
257 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTT-GAGCATGGA
* * * * *
3348 ATGTTCGAAAAACTGGTCGAAGG-ATAGGATC-GGCTTGAATAA-TTTAAGGAACGGAAGTTATA
321 ATGTT-GAAAAATTGCTCAAAGGAAT-GGATCAGTCTTGAA-AACTTT-AGGAACCGAAGTTATA
* * * *
3410 AAAGAACTCGTAAAAGCTTGACAAGTTCGAAAGTTTAG-CCAAGAACAA
382 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG-TTCGTCCAAGAACCA
* * *
3458 AGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* ** * ** * **
3523 TAGCCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTGCACAAAG
66 CAAACTATTTAGACCAAATGATG-CGATTTCCCGAACATGGAATG-TTCGAAAAAATGGTCAAAG
** * * * * ** *
3586 GAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAACTGAGAAAAAGTTTGACAA
129 GAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACT--TTAAATGTTTGACAA
* * *
3651 GTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAA
192 GTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
* * * * * *
3716 GAGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCAAACATTGA
257 GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTT-GAGCATGGA
* * * * * *
3781 ATAATTGAAAAACTTG-TCGAATG-ATAGGAT-TGGCTTGAATAA-TTTAAGGAACCGAAGTTCT
321 AT-GTTGAAAAA-TTGCTCAAAGGAAT-GGATCAGTCTTGAA-AACTTT-AGGAACCGAAGTTAT
* *
3842 AAAAGAACTGGTAAATA-TTTGACAAGTTCTGAAGTTCGTCCAAGAACCA
381 AAAAGAACTCGTAAA-AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
* * * *
3891 AGAGAGAAACAATCCTC-CTGTAAATAAGTTTTTAATTCAAAGGCCGAAAGGTT-TTTTCAAAAT
1 AGAGAGAAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAAT
* * * **
3954 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCACAAAG
64 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAACATGGAATGTTCGAAAAAATGGTCAAAG
* * *
4019 GAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGA
129 GAATGGATCGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTT-TAAATGTTTGA
* * * * * * *
4083 AAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGAAAATAAATTTTAAATT
189 CAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATT
* * * * * * * *
4147 CAAACACCAAAAAGTTGTTTACCATATTACAAACTATTTTGACCAAATGATGCAATTTTCCGAGA
253 CAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTT-TGAGC
* ** * * * *
4212 ATGGAATGTTCGAAAAATTGGTTGAAGGAATGCATC-TTGTT-AAATACTATTAGGAACCAAAGT
316 ATGGAATGTT-GAAAAATTGCTCAAAGGAATGGATCAGTCTTGAAA-ACT-TTAGGAACCGAAGT
* * ** * * **
4275 TATAAAAGAAGTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTG
378 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
* *
4327 GGAGAGAAACAATTCTCACGTAAATAAATTTTTAA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAA
4362 GGAACCGAAG
Statistics
Matches: 3268, Mismatches: 542, Indels: 231
0.81 0.13 0.06
Matches are distributed among these distances:
429 1 0.00
430 140 0.04
431 1027 0.31
432 758 0.23
433 833 0.25
434 137 0.04
435 206 0.06
436 161 0.05
437 5 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (429 bp):
AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
CAAACTATTTAGACCAAATGATGCGATTTCCCGAACATGGAATGTTCGAAAAAATGGTCAAAGGA
ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTTTAAATGTTTGACAAGTTC
GAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTTGAGCATGGAATGTT
GAAAAATTGCTCAAAGGAATGGATCAGTCTTGAAAACTTTAGGAACCGAAGTTATAAAAGAACTC
GTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCA
Found at i:1639 original size:647 final size:648
Alignment explanation
Indices: 1--4361 Score: 4196
Period size: 647 Copynumber: 6.7 Consensus size: 648
* * *
1 AGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACCACAAGGTT-TTTACAAAATG
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATG
* * * ** *
65 ACAAACTATTTAGACCGAATCATACGATTTCCCGAGCATGGAATGTTTTAAAAATTGCACAAAGG
65 ACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGG
* * * * *
130 AATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGAA
130 AATGGATCGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTCGTAAA-ATTTGAC
* * * * * * * *
194 AAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTC
190 AAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTC
* * * * *
258 AAACACCAAAAGTTGTTTACCATATGACAAACTATTTTA-ATCAAATGATGCAATTTTTCGAGAA
254 AAAGACCAAAAGTTGTTTACCAAATGACAAACTA-TTTAGACCAAATGATGCGA-TTTTCGAGCA
* * * *
322 TGGAATGTTCGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATACTATT-AGGAACCGAAGTTA
317 TGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTTA
* ** * *** *
386 TAAAAGAACTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAAAAATTC
381 TAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
*
451 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
446 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACC
* * * *
516 AAATGATGCGATTTCTCGAGCATGGAATG-TTCGGAAAATGGCTCAAATGAATGGAT-AGTCTTG
511 AAATGATGCGATTTCTCGAGAATGGAATGCTTCGAAAAATTGCTCAAAGGAATGGATCA-TCTTG
* * * * *
579 AATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGT-AAAAGTTTGACTAGTTCGTAAGTTCGTC
575 AATACTTTAAGGAACCGAAGTTATAAAAGAACTGGTAAAAAGTTTGACAAGTTCGAAAGTTCGTC
*
643 CGAGAACCA
640 CAAGAACCA
* * *
652 AGAAAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAAGACCTAAA-TT-TTCTGACAAAAT
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT-T-ACAAAAT
* * * *
715 CACAAACTATTTAGACCGAAA-GATGCGATTTTCTGAGCATGGAATGTTC-AGAAAATGGCTCAA
64 GACAAACTATTTAGACC-AAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCAA
* * *
778 AGGAATGGA-CAGTCTTGAAAACTTTGAGGAACCAAAGTGATAAAAGAACTCGTAAAAGTATT-A
127 AGGAATGGATC-GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA-T-TTGA
* * * * * *
841 CTAGTTCGTAAGTTC-GTCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTAAAT
189 CAAGTTCGAAAGTTCAG-CCAAGAA-CAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* * * * * * * ** *
904 TCGATGACTAAAAGTTGTTTA-CATAATGACAAAGTTTTTAGACCGAATGATACGATTCCCGAAC
252 TCAAAGACCAAAAGTTGTTTACCA-AATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGC
* * * * * * *
968 ATGGAAAGTTCAAAAAAATGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAGGAACCTAAGTTA
316 ATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
* * * * * * * * *
1033 CAAAAGAGCTATTAAATGTTCCG-CAAGTACGGAAGTTCATCCAAAAACCATGAGAGAAACATTT
381 TAAAAGAACTAGTAAAAGTT-TGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT
* * * * *
1097 CTCACGTAAATAAGTTTTTAATTCAAAGGCCAAAAATTGTTTAGAAAATTATAACCTATTTAGAC
445 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGAC
* *
1162 CAAATGATGTC-ATTTCTTGAGAATGGAATGCTT-GAAAAATTGCACAAAGGAATGGATCATCTT
510 CAAATGATG-CGATTTCTCGAGAATGGAATGCTTCGAAAAATTGCTCAAAGGAATGGATCATCTT
* * * * * *
1225 TAATAGTTTATGGAACCGAAGTTATAAAGGAACTGGTAAAAAGTTTGACAAGTT-TAGAAGTTTG
574 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTGGTAAAAAGTTTGACAAGTTCGA-AAGTTCG
1289 TCCAAGAACCA
638 TCCAAGAACCA
* * * * * *
1300 AGAGAGAAACAATTGTCAAGTAAAT-A-TTTTTTATTCAAAGACGAAAAGTTGATTACAGAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * *
1363 AAAACTATTTAGGCCAAATGATGCGATTTCCCAAG-AGTAGAATGTTCGAAAAATTGCTCAAAGG
66 CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCA-TGGAATGTTCGAAAAATTGCTCAAAGG
* *** ** *
1427 ATTGGATCGTCTTGAATACTTTAAGGAATTGAAGTTATAAAAGAACTCACAAAATCTTGACAAGC
130 AATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAT-TTGACAAGT
* * *
1492 TCGAAAGTTCAGCCAAGAACAAAGAGAGAAATAGTTCTCACGTAAATAAGTTTTTGATTCAAAGA
194 TCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* ** * *
1557 GCAAAAGTTGTTTATGAAATGACAAACTATTTAGACCAAATAATGCGATTTTCAGAGCATTGAAT
259 CCAAAAGTTGTTTACCAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-GAGCATGGAAT
* * *
1622 GTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAG
323 GTTCGAAAAATTGGTCGAAGGAAT-GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * * *
1686 AACTCGTAAAAGTTTGACAAGCTCGGAAGTTCATCCAAAAACCAAGAGAGAAA-ATATTCTCATG
387 AACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTCTCACG
* * * * ** *
1750 CAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTA-ACCAAAT
451 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTA-TTTAGACCAAAT
* * * ** * * *
1814 GATGCAATTTTTCGAGAATGGAATG-TTCGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATAC
515 GATGCGATTTCTCGAGAATGGAATGCTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATAC
* * ** * * *
1878 TATT-AGGAACCAAAGTTATAAAAGAACTTGT-AAATTTTTGAAAAGTTCGAAAGGTCATCCAAG
580 T-TTAAGGAACCGAAGTTATAAAAGAACTGGTAAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAG
**
1941 AATTA
644 AACCA
* * *
1946 GGAGAGAAACAATTCTCACGTAAATAA-TTTTTAATTCAAAGACTAAGAGTTGTTTACAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * *
2010 CAAACTATTTAGACCAAATAATGCGATTTCTCGAGCATGGAATGCTCGAAAAATGGCTCAAATGA
66 CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGA
* * * * * *
2075 AAGGATAGTCTTGAAGACTTTAAGGAACCAAAGCTGTAAAAGAACTCGTAAAAGTTTGACTAGTT
131 ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTT
* * * * *
2140 CGTAAGTTC-GTCCGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTTAAGGA
195 CGAAAGTTCAG-CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* * * * *
2204 CCAAAATTTGTTTACAAAATCACAAACTATTTAGACCGGAA-GATGCGATTTCCGGAGCATGGAA
259 CCAAAAGTTGTTTACCAAATGACAAACTATTTAGACC-AAATGATGCGATTTTC-GAGCATGGAA
* * * *
2268 TGTT-TAGAAAA-TGGCTCAAAGGAATGGA-CAGTCTTGAATACTTTGAGGAACCAAAGTTATAA
322 TGTTCGA-AAAATTGG-TCGAAGGAATGGATC-GTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * * *
2330 AAGAACTCGTAAAAGTTCGACTAGTTTGTAAGTTCATCCTAGAACCACA-AGAGAAACAATTCTC
384 AAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCA-AGAGAGAAACAATTCTC
* * * * * * * * *
2394 ACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATATTGACAAAGTTTTTAGACCGA
448 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAA
* * * * * * *
2459 ATGATACGA-TTCCCGAGCATGGAA-ACTTCGAAAAATTGGTCGAAA-GAATGGATCGTCTTGAG
513 ATGATGCGATTTCTCGAGAATGGAATGCTTCGAAAAATTGCTC-AAAGGAATGGATCATCTTGAA
* * ** ** * * * * * * * *
2521 TACTCTCAGGAACTTAAGTTGCAGAAGAGCT-ATTAAATGTTTCG-CAAGTACGGAAGTTTGTCC
577 TACTTTAAGGAACCGAAGTTATAAAAGAACTGGTAAAAAGTTT-GACAAGTTCGAAAGTTCGTCC
2584 AAGAACCA
641 AAGAACCA
* * *
2592 TGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * * * * * *
2657 TAACCTACTCAGACCAAATTATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTG-TACAAA
66 CAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCT-CAAA
** * * *
2719 GGAATGGATCACCTTTAATAGTTTAAGGAACCAATGTTAT-AAAGAAACT-GATAAAAAGTTTGA
128 GGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAG-AACTCG-T-AAAA-TTTGA
*
2782 CAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTC
189 CAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * * * * ** *
2847 AAAGAGCAAAAGTTGTTTACGAAATGTCAAACTATTTAGACCAAATAATGCGATTTTCCAATATT
254 AAAGACCAAAAGTTGTTTACCAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCATG
* * * * * * *
2912 GAAAGTTCGAAAAACTGGTCGAAGG-ATAGGACCGGCTGGAATAATTTAAGGAACCGATGTTATA
319 GAATGTTCGAAAAATTGGTCGAAGGAAT-GGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * * ** * * *
2976 AAAGAACTCA-TAAAAGTTTGATATGCTCCAAAGTTCAGCCAAGAACAAAAGAGAGAAACAGTTC
383 AAAGAACT-AGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAAC-CAAGAGAGAAACAATTC
* * **
3040 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAGCCTATTTAGACC
446 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACC
* * * * *
3105 AAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGATCACCTTT
511 AAATGATG-CGATTTCTCGAGAATGGAATGCTTCGAAAAATTGCTCAAAGGAATGGATCATCTTG
* * * *
3168 AATAGTTTAAGGAACCGAAGTTATAAAGGAACTAAG-AAAAAGTTTGAGAAGTTCGAAAGTTCAG
575 AATACTTTAAGGAACCGAAGTTATAAAAGAACT-GGTAAAAAGTTTGACAAGTTCGAAAGTTC-G
**
3232 -CCAAGAAAAA
638 TCCAAGAACCA
* * ** *
3242 AGAGAGAAATAGTTCTCACGTAAATAAGTTTTTAATTCAAAGTGCAAAAGTTGTTTACGAAATGA
1 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
* * ** * * * *
3307 CAAACTATTTAGACCAAATAATACGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-
66 CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGA
* * ** *
3371 ATAGGATCGGCTTGAATAATTTAAGGAACGGAAGTTATAAAAGAACTCGTAAAAGCTTGACAAGT
131 AT-GGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGT
* *
3436 TCGAAAGTTTAGCCAAGAACAAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
194 TCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGA
* ** * ** *
3501 CCAAAAATTGTTTAGAAAATGATAGCCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAA
259 CCAAAAGTTGTTTACCAAATGACAAACTATTTAGACCAAATGATG-CGATTT-TCGAGCATGGAA
** * ** * * *
3565 TGCTT-GAAAAATTGCACAAAGGAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAG
322 TG-TTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * *
3629 GAACTGAGAAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAGTTCTCAC
386 GAACT-AGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCAC
*
3694 GTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACG-AAATGACAAACTATTTAGACCAAA
450 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-GAAAATGACAAACTATTTAGACCAAA
* * * * ** * * ***
3758 TAATGCGATTTTTC-AAACATTGAATAATT-GAAAAACTTG-TCGAATG-ATAGGATTGGCTTGA
514 TGATGCGATTTCTCGAGA-ATGGAATGCTTCGAAAAA-TTGCTCAAAGGAAT-GGATCATCTTGA
* * *
3819 ATAATTTAAGGAACCGAAGTTCTAAAAGAACTGGTAAATA-TTTGACAAGTTCTG-AAGTTCGTC
576 ATACTTTAAGGAACCGAAGTTATAAAAGAACTGGTAAAAAGTTTGACAAGTTC-GAAAGTTCGTC
3882 CAAGAACCA
640 CAAGAACCA
* * * *
3891 AGAGAGAAACAATCCTC-CTGTAAATAAGTTTTTAATTCAAAGGCCGAAAGGTT-TTTTCAAAAT
1 AGAGAGAAACAATTCTCAC-GTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAAT
* *
3954 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCACAAAG
64 GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAG
* * * *
4019 GAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGA
129 GAATGGATCGTCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTCGTAAA-ATTTGA
* * * * * * * * *
4083 AAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTCATGAAAATAAATTTTAAATT
189 CAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATT
* * * * * *
4147 CAAACACCAAAAAGTTGTTTACCATATTACAAACTATTTTGACCAAATGATGCAATTTTCCGAGA
253 CAAAGACC-AAAAGTTGTTTACCAAATGACAAACTATTTAGACCAAATGATGCGATTTT-CGAGC
* * * * * *
4212 ATGGAATGTTCGAAAAATTGGTTGAAGGAATGCATCTTGTTAAATACTATT-AGGAACCAAAGTT
316 ATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACT-TTAAGGAACCGAAGTT
* * ** * ***
4276 ATAAAAGAAGTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAACAATT
380 ATAAAAGAACTAGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATT
*
4341 CTCACGTAAATAAATTTTTAA
445 CTCACGTAAATAAGTTTTTAA
4362 GGAACCGAAG
Statistics
Matches: 3016, Mismatches: 581, Indels: 225
0.79 0.15 0.06
Matches are distributed among these distances:
645 12 0.00
646 397 0.13
647 1084 0.36
648 369 0.12
649 342 0.11
650 392 0.13
651 173 0.06
652 148 0.05
653 97 0.03
654 2 0.00
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.28
Consensus pattern (648 bp):
AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
CAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGA
ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTGACAAGTTC
GAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC
AAAAGTTGTTTACCAAATGACAAACTATTTAGACCAAATGATGCGATTTTCGAGCATGGAATGTT
CGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
AGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTAATTCAAAGACCAAAAGTTGTTTAGAAAATGACAAACTATTTAGACCAAATGATGCG
ATTTCTCGAGAATGGAATGCTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAG
GAACCGAAGTTATAAAAGAACTGGTAAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA
Found at i:4413 original size:30 final size:30
Alignment explanation
Indices: 4377--4439 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
4367 CGAAGGATAT
4377 AAAAGAACTCGTAAAAGCTTGACTAGTTCG
1 AAAAGAACTCGTAAAAGCTTGACTAGTTCG
4407 AAAAGAACTCGTAAAAGCTTGACTAGTTCG
1 AAAAGAACTCGTAAAAGCTTGACTAGTTCG
4437 AAA
1 AAA
4440 GTTCAGCCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (30 bp):
AAAAGAACTCGTAAAAGCTTGACTAGTTCG
Found at i:4896 original size:216 final size:216
Alignment explanation
Indices: 4407--9267 Score: 4216
Period size: 216 Copynumber: 22.5 Consensus size: 216
4397 GACTAGTTCG
* * * * * *
4407 AAAAGAACTCGTAAA-AGCTTGACTAGTTCGAAAGTTCAGCCAAGAACAAACAGAGAAACAGTTC
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * ** *
4471 TCACGTAAATAAATTTTTAACTCAATGAGAAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* ** * * * *
4536 AAATAATGCGATTTTTCGAG-ATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCAGCTTGA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAAT-GGATCATCTTGA
* * * * *
4599 ATAATTTAAGGAATCGAAGTTAT
194 ATACTCTCAGGAACCAAAGTTAT
* *
4622 AAAAGAACTCGTAAA-AGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTC
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * * *
4686 TCACGTAAATAAGTTTTCAATTCAATGACCAAAAGTTATTTACAAAATTAAAAAAC-ATTTAGAA
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-TGACAAACTATTTAGAC
** * ** * * * *
4750 TGAATGATGCGATTTCCCGAGCCTGGAATACTCGAAAAATTAGTCGAAGGAATGGGTCATCTTTA
129 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGA
* * * *
4815 ATGCTCTCAGAAACCGAAGTCAT
194 ATACTCTCAGGAACCAAAGTTAT
* ** * * *
4838 AAAAGAACTGGTAAATATTTGACAAGTTCCTAAGTTCGTCCAAGAACCAATAGAGAAACAATCCT
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* *
4903 CATGTAAATAAGTTTTTAATTCAAAGACCGAAAGGTT-TTTACAAAATGACAAACTATTTAGACC
66 CACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * * ** *
4967 AAATGATGCAATTTCTCGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCATCTTTAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGAA
**
5032 TACTCTCAACAACCAAAGTTATAAT
195 TACTCTCAGGAACCAAAG-T-T-AT
* * * * * *
5057 AAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGGGAGAAA-ATATTC
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTC
* * * * * * * * * *
5121 TCATGCAAATAAATTTTAAATTCAGACACCAAAAGTTTTTTACCATATGACAAACTATTTTGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * * * ** * * *
5186 AAATGATGCAATTTTCCGAGAATGGAATGTTTGAAAAATTGGTTGAAGGAATGCATCTTCTTAAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGAA
* * *
5251 TACTATTAGAAACCAAAGTTAT
195 TACTCTCAGGAACCAAAGTTAT
* * * ***
5273 AAAAGAACTTGTAAATTTTTGAAAAGTTCGAAAGTTCATCCAAGAACTGGGAGAGAAACAATTCT
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
*
5338 CACGTAAATAAGTTTTTAATTCAAAGACCGAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
** * * *
5403 AATGATGCGATTTTTCGAGCATGGAATGTTTGGAAAA-TGGCTCAAATGAATGGAT-AGTCTTGA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGG-TCAAAGGAATGGATCA-TCTTGA
* * * *
5466 AAACTTTTAGGAACCAAAGTTGT
194 ATACTCTCAGGAACCAAAGTTAT
** * * *
5489 AAAAGAACTCGTAAA-AGTTTGACTTGTTCGTAAGTTCGTCCCAGAACCAAGAGAGAAACAATTC
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * *
5553 TCACGTAAATAAGTTTTTAATTTAAAGA-CAGAAATTTGTTTACAAAATCACAAACTATTTAGAC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCA-AAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * * *
5617 CAAAAGATGTGATTTTCGGAGCATGGAATGTTC-AAAAAATGGCTCAAAAGAATGGA-CAGTCTT
129 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGG-TCAAAGGAATGGATCA-TCTT
* * *
5680 CAATACTTTGAGGAACCAAAGTTAT
192 GAATACTCTCAGGAACCAAAGTTAT
* *** * * * * *
5705 AAAAGAACTCATAACGGTTCGACTAGTTCGTAAGTTCGTCCTAGAACCACA-AGA-AGAACAATT
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCA-AGAGAGA-AACAATT
* * * * *
5768 CTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACAAAGT-TTTCAGA
64 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT-AGA
* * * * * **
5832 CCGAATGATACGATTAT--CGAGCATGGAAAGTTCAAAAAATTGGTCGAAGGAATGGATTGTCTT
128 CCAAATGATGCGATT-TCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTT
* * * **** *
5895 GAGTATTCTTAGGAAGTTTAGTTAC
192 GAATACTCTCAGGAACCAAAGTTAT
* ** * * * * *
5920 AAAAGAGCTATTAAATGTTCCG-CAAGTACGGAAGTTCATCCAAGAACCATGAGAGAAACAATTC
1 AAAAGAACTCGTAAATATT-TGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * * * * *
5984 CCACGTAGATATGTTTTTAAGTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * *
6049 AAATGATG-GAATTTCAC-AGGCATGGAAGGCTT-GAAAAATT-GTACAAAGGAATGGATCACCT
130 AAATGATGCG-ATTTCCCGA-GCATGGAATG-TTCGAAAAATTGGT-CAAAGGAATGGATCATCT
* * * *
6110 TTAATAGTCTAAGGAACCGAAGTTAT
191 TGAATACTCTCAGGAACCAAAGTTAT
* * * * * *
6136 AAAGGAACT-GATAAA-AGGTTTGACAAGTTCAAAAGTTTAGCCAAGAACAAAGAGAGAAACAGT
1 AAAAGAACTCG-TAAATA--TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAAT
* * *
6199 TCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGAAAAACTATTTAGA
63 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * **
6264 CCAAATAATGCGATTCCCCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTT
128 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAAT-GGATCATCTT
* * * *
6328 GAATAATTTAAGGAACCGAAGTTAT
192 GAATACTCTCAGGAACCAAAGTTAT
* * * *
6353 AAAAGAACTCGTAAA-AGCTTGACAAGTTCGGAAGTTTATCCAAAAACCAAGAGAGAAACAATTC
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * *
6417 TCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGA
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GACAAACTATTTAGA
*** * * * *
6481 ATGAATGATGCGATTTCCCGACCCTGGAATGCTCGAAAAATTAGTC----GAA--G--------G
128 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTG
* *
6532 AAT-CTC-C-GAAACCGAAGTTAT
193 AATACTCTCAGGAACCAAAGTTAT
* * *
6553 AAAAGAACTGGTAAATATTTGACAAGTTCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCC
1 AAAAGAACTCGTAAATATTTGACAAGTTC-GAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
6617 TTC-CGTAAATAAGTTTTTAATTCAAAGA-CAGAAAGGTT-TTTACAAAATGACAAACTATTTAG
65 -TCACGTAAATAAGTTTTTAATTCAAAGACCA-AAA-GTTGTTTACAAAATGACAAACTATTTAG
* ** * **
6679 ACCAAAT-ATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCACACAGGAATGGATTGTCTT
127 ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTT
* *
6743 TAATACTCTCAAGAACCAAAGTTATAAT
192 GAATACTCTCAGGAACCAAAG-T-T-AT
* * * * * *
6771 AAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAACCATTCT
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * * * * * *
6836 CATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * ** * * *
6901 AATGATGCAATTTTCTGAGAATGGAATGTTTGAAAAATTGGTTGAAGGAATGCATCTTCTTAAAT
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGAAT
* *
6966 ACTATTAGGAACCAAAGTTAT
196 ACTCTCAGGAACCAAAGTTAT
* * * * * ***
6987 AAAAGAAGTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAA-AATTCT
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
7051 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
7116 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAA-TGGCTCAAATGAATGGAT-AGTCTTGA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGG-TCAAAGGAATGGATCA-TCTTGA
* * * * * *
7179 ATACTTTAAGGAATCGAATTTGT
194 ATACTCTCAGGAACCAAAGTTAT
* * * * *
7202 AAAAGAATTCGTAAA-AGTTTGACTAGTCCGTAAGTTCATCCCATAACCAAGAAGAACAAAGAGA
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAG-T--T--CAT--CC---AAGAACCAAGAGA
* * * * **
7266 GAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAGCC
55 GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC
* * *
7331 TATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTGCAT-AAAGGAAT
120 TATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAATG-TTCGAAAAATTG-GTCAAAGGAAT
* * * * *
7393 GGATTAGCTTTAATTA-TTTAAGGAACCAAAGTTAT
182 GGATCATCTTGAA-TACTCTCAGGAACCAAAGTTAT
* * * * * *
7428 AAAGGAACT-GATAAA-AGGTTTGACAAGTTCGAAAGTTTAGCCAAGAACAAAGAGAGAAATAGT
1 AAAAGAACTCG-TAAATA--TTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAAT
** * *
7491 TCTCACGTAAATAAGTTTTTAATTCAAAGAGAAAAAGTTATTTACGAAATGACAAACTATTTAGA
63 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* ** * * * * * **
7556 CCAAATAATGCGATTTTTCAAGCATTGAATATTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTT
128 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAAT-GGATCATCTT
* * * ***
7620 GAATAATTTAAGGAATGGAAGTTAT
192 GAATACTCTCAGGAACCAAAGTTAT
* * *
7645 AAAAGAACTCGTAAA-AGCTTGACAAGTTCGGAAGCTT-ATCCAAAAACCAAGAGAGAAACAATT
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAG-TTCATCCAAGAACCAAGAGAGAAACAATT
* * * * *
7708 CTCACGTATATAAGTTTTCAATTCAAAGACCGAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAG
64 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GACAAACTATTTAG
*** * * * * * *
7772 AATGAATGATGTGATTTCCCGAGCCTGGAATGCTCGAAAAATTAGTCGAAGGAATGGGTCATCTT
127 ACCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTT
* * * * *
7837 TAATGCTCTCAGAAATCGAAGTTAT
192 GAATACTCTCAGGAACCAAAGTTAT
* *
7862 AAAAGAACT-GATAAATATTTGACAAGTTCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATC
1 AAAAGAACTCG-TAAATATTTGACAAGTTC-GAAAGTTCATCCAAGAACCAAGAGAGAAACAATT
** * * * *
7925 CTCGTGTAACTAAGTTTTTAATTTAAAGACCGAAAGGTT-TTTACAAAATGACAAACTATTTAGG
64 CTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * ** * * *
7989 CCAAAT-ATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTGCACACAGGAATGGATCGTCTTT
128 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTG
*
8053 AATACTCTCAAGAACCAAAGTTATAAT
193 AATACTCTCAGGAACCAAAG-T-T-AT
* * * * *
8080 AAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* ** * *
8145 CACGTAAATAAGTTTTTAATTTAAAGACCAAATTTTGTTTGCAAAATCACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
8210 AAAGATGCGATTTTCGGAGCATGGAATGTTC-AGAAAA-TGGCTCAAAGGAATGGAT-AGTCTTG
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGG-TCAAAGGAATGGATCA-TCTTG
** *
8272 AACGCAT-TGAGGAACCAAAGTTAT
193 AATAC-TCTCAGGAACCAAAGTTAT
** * * * * * *
8296 CGAAGAACTCGTAAA-AGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATT
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAGTTCATCCAAGAACCA-AGAGAGAAACAATT
* * * * * * *
8359 CTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACAAAGTTTTTGGAC
64 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * *
8424 CGAATGATACGA-TTCCCGAGCATGGAAAGTTCAAAAAATTGGTCGAAGGAATGGATCATCTTGA
129 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGA
* ** *
8488 GTACTCTCAGGAACTTAAGTTAC
194 ATACTCTCAGGAACCAAAGTTAT
* ** * * * * ** *
8511 AAAAGAGCTATTAAATGTTCCG-CAAGTACGAAAGTTCGTCCAAGAACCGTGATAGAAACAATTC
1 AAAAGAACTCGTAAATATT-TGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* * * *
8575 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* ** * *
8640 AAATGATGTC-ATTTCTCGAGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGATCGTCTTT
130 AAATGATG-CGATTTCCCGAGCATGGAATG-TTCGAAAAATTGGTCAAAGGAATGGATCATCTTG
* *
8703 AATGCTCTCAAGAACCAAAGTTATAAT
193 AATACTCTCAGGAACCAAAG-T-T-AT
* * * * * *
8730 AAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCAAAGAACCAAGAGAGAAA-ATATTC
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTC
* * * * * * * *
8794 TCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * * ** * * * *
8859 AAATGATGCAATTTTCCGAGAATGGAATGTTCGAAAAATTGGTTGAAGGAAAGCATCTTCTTAAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGAA
** * *
8924 TACAATTAGGAACCAACGTTAT
195 TACTCTCAGGAACCAAAGTTAT
* * * * ***
8946 AAAAGAACTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCT
1 AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
*
9011 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACTA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* *
9076 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA-TGGCTCAAACGAATGGAT-AGTCTTGA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGG-TCAAAGGAATGGATCA-TCTTGA
* * * * *
9139 ATACTTTAAGGAACCGAATTTGT
194 ATACTCTCAGGAACCAAAGTTAT
* * * * *
9162 AAAAGAATTCGTAAA-AGTTTGACTAGTCCGTAAGTTCGTCCCATAACCAAGAACAAAGAGAGAA
1 AAAAGAACTCGTAAATA-TTTGACAAGTTCGAAAG-T--T--CAT--CCAAGAACCAAGAGAGAA
*
9226 ACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
58 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
9268 ATGCGATTTT
Statistics
Matches: 3768, Mismatches: 719, Indels: 310
0.79 0.15 0.06
Matches are distributed among these distances:
198 37 0.01
199 13 0.00
200 103 0.03
201 7 0.00
202 4 0.00
203 4 0.00
204 1 0.00
211 1 0.00
212 3 0.00
213 4 0.00
214 8 0.00
215 675 0.18
216 1387 0.37
217 555 0.15
218 264 0.07
219 455 0.12
220 6 0.00
221 3 0.00
222 3 0.00
223 56 0.01
224 1 0.00
225 15 0.00
226 139 0.04
227 24 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
AAAAGAACTCGTAAATATTTGACAAGTTCGAAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCATCTTGAAT
ACTCTCAGGAACCAAAGTTAT
Found at i:8205 original size:651 final size:646
Alignment explanation
Indices: 4407--9267 Score: 4529
Period size: 651 Copynumber: 7.5 Consensus size: 646
4397 GACTAGTTCG
* * * * * *
4407 AAAAGAACTCGTAAAAGCTTGACTAGTTCGAAAGTTCAGCCAAGAACAAACAGAGAAACAGTTCT
1 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * ** *
4472 CACGTAAATAAATTTTTAACTCAATGAGAAAAAGTTGTTTACGAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* ** * * *
4537 AATAATGCGATTTTTCGAG-ATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCAGCTTGAA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATCATCTTGAA
* * * *
4600 TAATTTAAGGAATCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTCGGAAGTTCATCCA
195 TACTCTCAGAAATCGAAGTTATAAAAGAACT-GTAAATA-TTTGACAAGTTC-GAAGTTCATCCA
* * * *
4664 AAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAATGACCAAAAGTTATTTAC
257 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * *** * * * *
4729 AAAATTAAAAAAC-ATTTAGAATGAATGATGCGATTTCCCGAGCCTGGAATACTCGAAAAATTAG
322 AAAA-TGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGCTTGAAAAATT-G
* * * * * * * * *
4793 -TCGAAGGAATGGGTCATCTTTAATGCTCTC-AGAAACCGAAGTCATAAAAGAACTGGTAAATAT
385 CACAAAGGAATGGATCGTCTTTAATACTCTCAAG-AACCAAAGTTATAAAAGAACTTGTAAATGT
** ** * * *
4856 TTGACAAGTTCCTAAGTTCGTCCAAGAACCAATAGAGAAACAATCCTCATGTAAATAAGTTTTTA
449 TTGACAAGTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
* * * *
4921 ATTCAAAGACCGAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCG
514 ATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCG
* ** * * * * * *
4985 AGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCATCTTTAATACTCTCAA-CAACCAAA
578 AGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATAAT-TTAAGGAACCAAA
5049 GTTATAAT
642 G-T-T-AT
* *** * * * * *
5057 AAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGGGAGAAA-ATATTC
1 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACA-ATTC
* * * * * * * * * *
5121 TCATGCAAATAAATTTTAAATTCAGACACCAAAAGTTTTTTACCATATGACAAACTATTTTGACC
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * * * *
5186 AAATGATGCAATTTTCCGAGAATGGAATGTTTGAAAAATTGGTTGAAGGAATGCATCTTCTTAAA
130 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGAA
* * * * * *
5251 TACTATTAGAAACCAAAGTTATAAAAGAACTTGTAAATTTTTGAAAAGTTCGAAAGTTCATCCAA
195 TACTCTCAGAAATCGAAGTTATAAAAGAAC-TGTAAATATTTGACAAGTTCG-AAGTTCATCCAA
*** *
5316 GAACTGGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCGAAAGTTGTTTACA
258 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * *
5381 AAATGACAAACTATTTAGACCAAATGATGCGATTTTTCGAGCATGGAATGTTTGGAAAATGGCTC
323 AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGCTTGAAAAATTGCAC
* * * * * * * * * *
5446 AAATGAATGGATAGTCTTGAAAACTTTTAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGA
388 AAAGGAATGGATCGTCTTTAATACTCTCAAGAACCAAAGTTATAAAAGAACTTGTAAATGTTTGA
** * ** * *
5511 CTTGTTCGTAAGTTCGTCCCAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTT
453 CAAGTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTC
* * *
5576 AAAGA-CAGAAATTTGTTTACAAAATCACAAACTATTTAGACCAAA-AGATGTGA-TTTTCGGAG
518 AAAGACCA-AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATA-ATGCGATTTTTC-GAG
* * * * * *
5638 CATGGAATGTTC-AAAAAATGGCTCAAAAGAATGGA-CAGTCTTCAATACTTTGAGGAACCAAAG
580 CATGGAATGTTCGAAAAATTGG-TCGAAGGAATGGATC-GTCTTGAATAATTTAAGGAACCAAAG
5701 TTAT
643 TTAT
* * * * * * *
5705 AAAAGAACTCAT-AACGGTTCGACTAGTTCGTAAGTTCGTCCTAGAACCACA-AGA-AGAACAAT
1 AAAAGAACTCGTAAAAGCTT-GACAAGTTCGGAAGTTCATCCAAGAACCA-AGAGAGA-AACAAT
* * * * *
5767 TCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACAAAGT-TTTCAG
63 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT-AG
* * * * **
5831 ACCGAATGATACGATTAT--CGAGCATGGAAAGTTCAAAAAATTGGTCGAAGGAATGGATTGTCT
127 ACCAAATGATGCGATT-TCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCT
* * * * ** * * * * * *
5894 TGAGTATTCTTAGGAAGT-TTAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACGGAAGTTC
191 TGAATACTCTCA-GAAATCGAAGTTATAAAAGAACT-GTAAATATT-TGACAAGTTC-GAAGTTC
* * * * * *
5957 ATCCAAGAACCATGAGAGAAACAATTCCCACGTAGATATGTTTTTAAGTCAAAGACCAAAAATTG
252 ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * * *
6022 TTTAGAAAATGATAACCTATTTAGACCAAATGATG-GAATTTCAC-AGGCATGGAAGGCTTGAAA
317 TTTACAAAATGACAAACTATTTAGACCAAATGATGCG-ATTTCTCGA-GCATGGAATGCTTGAAA
* ** * * *
6085 AATTGTACAAAGGAATGGATCACCTTTAATAGTCT-AAGGAACCGAAGTTATAAAGGAAC-TGAT
380 AATTGCACAAAGGAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAAAAGAACTTG-T
* * * * * *
6148 AAAAGGTTTGACAAGTTCAAAAGTTTAGCCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAA
443 -AAATGTTTGACAAGTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAA
* * *
6213 GTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGAAAAACTATTTAGACCAAATAATGCGAT
507 GTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGAT
*** * * *
6278 TCCCCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGA
572 TTTTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATCGTCTTGAATAATTTAAGGA
*
6342 ACCGAAGTTAT
636 ACCAAAGTTAT
* *
6353 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGTTTATCCAAAAACCAAGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
* * * *
6418 CACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGAA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GACAAACTATTTAGAC
** * * * *
6482 TGAATGATGCGATTTCCCGACCCTGGAATGCTCGAAAAATTAGTC----GAA--G--------GA
129 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGA
* *
6533 AT-CTC-C-GAAACCGAAGTTATAAAAGAACTGGTAAATATTTGACAAGTTCTGAAGTTCGTCCA
194 ATACTCTCAGAAATCGAAGTTATAAAAGAACT-GTAAATATTTGACAAGTTC-GAAGTTCATCCA
*
6595 AGAACCAAGAGAGAAACAATCCTTC-CGTAAATAAGTTTTTAATTCAAAGA-CAGAAAGGTT-TT
257 AGAACCAAGAGAGAAACAATTC-TCACGTAAATAAGTTTTTAATTCAAAGACCA-AAA-GTTGTT
* *
6657 TACAAAATGACAAACTATTTAGACCAAAT-ATGCGATTTCCCGAGCATGGAATGTTTGAAAAATT
319 TACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGCTTGAAAAATT
* *
6721 GCACACAGGAATGGATTGTCTTTAATACTCTCAAGAACCAAAGTTATAATAAAAGAACTTGTAAA
384 GCACAAAGGAATGGATCGTCTTTAATACTCTCAAGAACCAAAG-T-T-ATAAAAGAACTTGTAAA
* * * * * * *
6786 TTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAACCATTCTCATGCAAATAAATTT
446 TGTTTGACAAGTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * * * * *
6851 TAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATGC-AATTTT
511 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTTT
* * * * * * *
6915 CTGAGAATGGAATGTTTGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATACTATT-AGGAACC
576 C-GAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATAAT-TTAAGGAACC
6979 AAAGTTAT
639 AAAGTTAT
* * *** * ***
6987 AAAAGAAGTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAA-AATTCT
1 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
7051 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * *
7116 AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAA-TGGCTCAAATGAATGGAT-AGTCTTGA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGG-TCGAAGGAATGGATCA-TCTTGA
* * * * * * * *
7179 ATACTTTAAGGAATCGAATTTGTAAAAGAATTCGTAAA-AGTTTGACTAGTCCGTAAGTTCATCC
194 ATACTCTCAGAAATCGAAGTTATAAAAGAACT-GTAAATA-TTTGACAAGTTCG-AAG-T--T--
* *
7243 CATAACCAAGAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
251 CAT--CC---AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
* * * ** *
7308 AAATTGTTTAGAAAATGATAGCCTATTTAGACCAAATGATGTC-ATTTCTCGGGCATGGAATGCT
311 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATGCT
* * * *
7372 TGAAAAATTGCATAAAGGAATGGATTAG-CTTTAATTA-T-TTAAGGAACCAAAGTTATAAAGGA
375 TGAAAAATTGCACAAAGGAATGGA-TCGTCTTTAA-TACTCTCAA-GAACCAAAGTTATAAAAGA
* * * * * *
7434 AC-TGATAAAAGGTTTGACAAGTTCGAAAGTTTAGCCAAGAACAAAGAGAGAAATAGTTCTCACG
437 ACTTG-T-AAATGTTTGACAAGTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACG
** * *
7498 TAAATAAGTTTTTAATTCAAAGAGAAAAAGTTATTTACGAAATGACAAACTATTTAGACCAAATA
500 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATA
* * * * *
7563 ATGCGATTTTTCAAGCATTGAATATTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGAATAAT
565 ATGCGATTTTTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATCGTCTTGAATAAT
***
7627 TTAAGGAATGGAAGTTAT
629 TTAAGGAACCAAAGTTAT
*
7645 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGCTT-ATCCAAAAACCAAGAGAGAAACAATTC
1 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAG-TTCATCCAAGAACCAAGAGAGAAACAATTC
* * * * *
7709 TCACGTATATAAGTTTTCAATTCAAAGACCGAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGA
65 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GACAAACTATTTAGA
*** * * * * * *
7773 ATGAATGATGTGATTTCCCGAGCCTGGAATGCTCGAAAAATTAGTCGAAGGAATGGGTCATCTTT
128 CCAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTG
* *
7838 AATGCTCTCAGAAATCGAAGTTATAAAAGAACTGATAAATATTTGACAAGTTCTGAAGTTCGTCC
193 AATACTCTCAGAAATCGAAGTTATAAAAGAACTG-TAAATATTTGACAAGTTC-GAAGTTCATCC
* ** * * *
7903 AAGAACCAAGAGAGAAACAATCCTCGTGTAACTAAGTTTTTAATTTAAAGACCGAAAGGTT-TTT
256 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTT
* *
7967 ACAAAATGACAAACTATTTAGGCCAAAT-ATGCGATTTCTCGAGCATGGAATGTTTGAAAAATTG
320 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGCTTGAAAAATTG
*
8031 CACACAGGAATGGATCGTCTTTAATACTCTCAAGAACCAAAGTTATAATAAAAGAACTTGTAAAT
385 CACAAAGGAATGGATCGTCTTTAATACTCTCAAGAACCAAAG-T-T-ATAAAAGAACTTGTAAAT
* * *
8096 TTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
447 GTTTGACAAGTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* ** * *
8161 TAATTTAAAGACCAAATTTTGTTTGCAAAATCACAAACTATTTAGACCAAA-AGATGCGA-TTTT
512 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATA-ATGCGATTTTT
* * ** *
8224 CGGAGCATGGAATGTTC-AGAAAA-TGGCTCAAAGGAATGGATAGTCTTGAACGCA-TTGAGGAA
576 C-GAGCATGGAATGTTCGA-AAAATTGG-TCGAAGGAATGGATCGTCTTGAA-TAATTTAAGGAA
8286 CCAAAGTTAT
637 CCAAAGTTAT
** * * * * *
8296 CGAAGAACTCGTAAAAG-TTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATT
1 AAAAGAACTCGTAAAAGCTT-GACAAGTTCGGAAGTTCATCCAAGAACCA-AGAGAGAAACAATT
* * * * * * *
8359 CTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACAAAGTTTTTGGAC
64 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * *
8424 CGAATGATACGA-TTCCCGAGCATGGAAAGTTCAAAAAATTGGTCGAAGGAATGGATCATCTTGA
129 CAAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGA
* * * * * * * * * *
8488 GTACTCTCAGGAA-CTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTACGAAAGTTCGTC
194 ATACTCTCAGAAATC-GAAGTTATAAAAGAACT-GTAAATATT-TGACAAGTTCG-AAGTTCATC
** * *
8551 CAAGAACCGTGATAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTT
255 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * *
8616 AGAAAATGATAACCTATTTAGACCAAATGATGTC-ATTTCTCGAGCATGGAATGCTTGAAAAATT
320 ACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATGCTTGAAAAATT
*
8680 GCACAAAGGAATGGATCGTCTTTAATGCTCTCAAGAACCAAAGTTATAATAAAAGAACTTGTAAA
384 GCACAAAGGAATGGATCGTCTTTAATACTCTCAAGAACCAAAG-T-T-ATAAAAGAACTTGTAAA
* * * * * * *
8745 TTTTTGAAAAGTTTGAAAGTTAATCAAAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATT
446 TGTTTGACAAGTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTT
* * * * * * *
8809 TTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATGCAATTTT
510 TTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTT
* * * * * * * *
8874 CCGAGAATGGAATGTTCGAAAAATTGGTTGAAGGAAAGCATCTTCTTAAATACAATT-AGGAACC
575 TCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATA-ATTTAAGGAACC
*
8938 AACGTTAT
639 AAAGTTAT
* *** * ***
8946 AAAAGAACTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCT
1 AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
*
9011 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACTA
66 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * *
9076 AATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAA-TGGCTCAAACGAATGGAT-AGTCTTGA
131 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGG-TCGAAGGAATGGATCA-TCTTGA
* * * * * * * * *
9139 ATACTTTAAGGAACCGAATTTGTAAAAGAATTCGTAAA-AGTTTGACTAGTCCGTAAGTTCGTCC
194 ATACTCTCAGAAATCGAAGTTATAAAAGAACT-GTAAATA-TTTGACAAGTTCG-AAG-T--T--
* *
9203 CATAACCAAGAACAAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
251 CAT--CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
9268 ATGCGATTTT
Statistics
Matches: 3412, Mismatches: 638, Indels: 314
0.78 0.15 0.07
Matches are distributed among these distances:
631 7 0.00
632 109 0.03
633 169 0.05
634 209 0.06
635 16 0.00
636 8 0.00
638 1 0.00
644 1 0.00
646 12 0.00
647 238 0.07
648 358 0.10
649 307 0.09
650 649 0.19
651 708 0.21
652 21 0.01
653 4 0.00
654 3 0.00
655 2 0.00
656 6 0.00
657 15 0.00
658 257 0.08
659 138 0.04
660 159 0.05
661 15 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (646 bp):
AAAAGAACTCGTAAAAGCTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCT
CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCATCTTGAAT
ACTCTCAGAAATCGAAGTTATAAAAGAACTGTAAATATTTGACAAGTTCGAAGTTCATCCAAGAA
CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
TGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGCTTGAAAAATTGCACAAA
GGAATGGATCGTCTTTAATACTCTCAAGAACCAAAGTTATAAAAGAACTTGTAAATGTTTGACAA
GTTCGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
GACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATGGA
ATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATAATTTAAGGAACCAAAGTTAT
Found at i:10233 original size:215 final size:216
Alignment explanation
Indices: 9258--11587 Score: 2178
Period size: 215 Copynumber: 10.8 Consensus size: 216
9248 TTTAATTCAA
*
9258 AGACCAAA-AGATGCGATTT-TCGGAGCATGGAATGTT-TAGAAAA-TGGCTCAAAGGAATGGAT
1 AGACCAAATA-ATGCGATTTCTC-GAGCATGGAATGTTCGA-AAAATTGG-TCAAAGGAATGGAT
* * * * * * * *
9319 AGTCTTCAATACTTTGAGGAACCAAACTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAG
62 CGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAG
* * * *
9384 TTC-GTCCTAGAATCACAAGAG-G-AACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAA
127 TTCAG-CCAAGAA-CA-AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAA
* *
9446 AAGTTGTTTAC-ATAATGAC--AGTTTTT
189 AAGTTGTTTACGA-AATGACAAACTATTT
* * * * * *
9472 AGACCGAATGATACGA-TTCTCGAGCATGGAAAGTTCAAAAAATTGGTCGAAGGAATGGATCGTC
1 AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * ** * * ** * * *
9536 TTGAGTACTCTCAA-GAACTTAAGTTACAAAAGAGCTATTAAATGTTCTG-CAAGTACGGAAGTT
66 TTGAATACT-TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCGAAAGTT
* * * * * * *
9599 CATCCAAGAAC-CA-TGAGAAACAATTCTCACGTAGATAAGTTTTTAATTCAAAGGCCAAAAATT
129 CAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTT
* *
9662 GTTTA-GAAAATGATAACCTATTT
194 GTTTACG-AAATGACAAACTATTT
* * *
9685 AGACCAAATGATG-GCATTTCTCGGGCATGGAAGGCTT-GAAAAATT-GTACAAAGGAATGGATC
1 AGACCAAATAATGCG-ATTTCTCGAGCATGGAATG-TTCGAAAAATTGGT-CAAAGGAATGGATC
** * * *
9747 ACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAACT-GATAAAAAGTTTGACAAGTTCGAAA
63 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAGTTCGAAA
* * * *
9811 TTTTAGCCAAGAACAAAGAGAGAAAGAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA-GCAAA
126 GTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACG-AAA
9875 AGTTGTTTACGAAATGACAAACTATTT
190 AGTTGTTTACGAAATGACAAACTATTT
* * * * * * * *
9902 AGACCAAATAATGCGATTTTTCAAGTATTGAATGTTCGAAAAACTGTTCGAAGG-ATAGGATCGG
1 AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAAT-GGATCGT
* * * * *
9966 CTTGAATAATTTAAGGAACGGAAGTTATCAAAGAACACGTAAAAGCTTGACAAGTTCGAAAGTTC
65 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
* * * * *
10031 AGCCAAGAACAAATATAGAAACAGTTCTCACGTAAATAATTTTTTAATTCAATGA-GAAATAGTT
130 AGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAA-AGTT
*
10095 GTTTATGAAATGACAAACTATTT
194 GTTTACGAAATGACAAACTATTT
* * * * *
10118 AGACCAAA-AATGCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGG
1 AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAAT-GGATCGT
* * *
10181 CTTGAATAATGTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
65 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
* * * * * *
10246 ATCCACA-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTCAATTCAAAGACCAAAAATT
130 AGCCA-AGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTT
* *
10310 GTTTA-GAAAATGATAACCTATTT
194 GTTTACG-AAATGACAAACTATTT
* * * ** *
10333 AGACTAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGATCA
1 AGACCAAATAATG-CGATTTCTCGAGCATGGAATG-TTCGAAAAATTGGTCAAAGGAATGGATCG
* * * * * *
10396 CCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAGCT-GATATAAAGTTTGACAAGTT-TAGAA
64 TCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCG-TA-AAAGTTTGACAAGTTCGA-AA
* * *
10459 GTTC-GTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTCAAAGACGAAA
126 GTTCAG-CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAA
* * *
10521 AGTTGATTACGAAATGAAAAACTTTTT
190 AGTTGTTTACGAAATGACAAACTATTT
** * * * * * * *
10548 AGACCAAACGATGCGATTTCCCAAGCGTAGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTC
1 AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * * *
10613 TTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGACATGTTCGAAAGTTCA
66 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* *
10678 GCCAAGAACAGAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGA-GCAAAAGTTG
131 GCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACG-AAAAGTTG
10742 TTTACGAAATGACAAACTATTT
195 TTTACGAAATGACAAACTATTT
* * * * *
10764 AGACCAAATAATGTGATTTTTCGAGCATTGAATGTTCGATAAATTGGTCAAAGG-ATAGGATCGA
1 AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAAT-GGATCGT
* * * *
10828 CTTGAATAATTTAAGGAACCGAAGATATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTA
65 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
* * * * * * *
10893 ATCCAAAAACCAAGAGAGACACAATTCTCACGAAAATAAGTTTTTAATTTAAAGACCAAAAGTTG
130 AGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTG
* *
10958 TTTACAAAATGCCAAACTATTT
195 TTTACGAAATGACAAACTATTT
* * * * * **
10980 AGACCAAATGATGTGA-TTCTCGAGCATGGAATGTTCGGAAAATTGCTCAAATGAATGGAGAGTC
1 AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * ** * *
11044 TTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTGGTCCGTAAGTTC-
66 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * * * *
11108 GTCCGAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTG
131 G-CCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTG
* * * *
11173 TTTGCAAAATCATAAACTATTT
195 TTTACGAAATGACAAACTATTT
* * *
11195 ACACCAAA-AGATGCGATTT-TCGAAGCATGGAATGTTC-AAAAAATGGCTCAAAGGAATGGATA
1 AGACCAAATA-ATGCGATTTCTCG-AGCATGGAATGTTCGAAAAATTGG-TCAAAGGAATGGATC
* * * * * *
11257 GTCTTGAATACTTTGAGGAACCAAAGTTATCAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAGT
63 GTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGT
* * * * *
11322 TC-GTCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAA
128 TCAG-CCAAGAA-CAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAA
* *
11385 GTTGTTTAC-ATAATGACAAAGTTTTT
191 GTTGTTTACGA-AATGACAAACTATTT
* * * * * * **
11411 ATACCGAATAATACGA-TTCCCGAGCATGGAAAGTTCAAAAAATTGGTTGAAGGAATGGATCGTC
1 AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
* * ** * * ** * ** * *
11475 TT-AAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAAAGGTTCCACAAGTACGGAAGTTC
66 TTGAA-TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
* * *
11539 ATCCAAGAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
130 AGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
11588 GAAAAGGCCA
Statistics
Matches: 1751, Mismatches: 297, Indels: 135
0.80 0.14 0.06
Matches are distributed among these distances:
209 1 0.00
210 2 0.00
211 49 0.03
212 3 0.00
213 105 0.06
214 139 0.08
215 646 0.37
216 608 0.35
217 194 0.11
218 4 0.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (216 bp):
AGACCAAATAATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCAAAGGAATGGATCGTC
TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
GCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGT
TTACGAAATGACAAACTATTT
Found at i:10263 original size:431 final size:430
Alignment explanation
Indices: 9258--11587 Score: 2179
Period size: 431 Copynumber: 5.4 Consensus size: 430
9248 TTTAATTCAA
* * * *
9258 AGACCAAAAGATGCGATTT-TCGGAGCATGGAATGTT-TAGAAAA-TGGCTCAAAGGAATGGATA
1 AGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGA-AAAATTGG-TCGAAGGAATGGATC
* * * * * * *
9320 GTCTTCAATACTTTGAGGAACCAAACTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAGT
63 GTCTTGAATACTTTAAGGAA-CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGT
* * * * *
9385 TCGTCCTAGAATCACAAGAG-G-AACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAA
127 TCATCCAAGAA-C-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * * * * * * *
9448 GTTGTTTAC-ATAATGAC--AGTTTTTAGACCGAATGATACGA-TTCTCGAGCATGGAAAGTTCA
190 GTTGTTTACGA-AATGACAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATGGAATGTTCG
* * * * * ** *
9509 AAAAATTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAA-GAACTTAAGTTA-CAAAAGAGCT
254 AAAAATTGCTCAAAGGAATGGATCGTCTTGAATAAT-TTAAGGAACCGAAGTTATC-AAAGAAC-
* * * * * * * *
9572 A-TTAAATGTTCTG-CAAGTACGGAAGTTCATCCAAGAAC-CA-TGAGAAACAATTCTCACGTAG
316 ACGTAAAAGTT-TGACAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAA
* * * * *
9633 ATAAGTTTTTAATTCAAAGGCCAAAAATTGTTTAGAAAATGATAACCTATTT
380 ATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTAG-AAATGACAAACTATTT
* * *
9685 AGACCAAATGATG-GCATTTCTCGGGCATGGAAGGCTT-GAAAAATT-GTACAAAGGAATGGATC
1 AGACCAAATGATGCG-ATTTCTCGAGCATGGAATG-TTCGAAAAATTGGT-CGAAGGAATGGATC
** * * *
9747 ACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAACT-GATAAAAAGTTTGACAAGTTCGAAA
63 GTCTTGAATACTTTAAGGAA-CGAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAGTTCGAAA
* * * * * * *
9811 TTTTAGCCAAGAACAAAGAGAGAAAGAGTTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAA
125 GTTCATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* * *
9876 GTTGTTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCAAGTATTGAATGTTCGA
190 GTTGTTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATGGAATGTTCGA
* * * * *
9941 AAAACTGTTCGAAGG-ATAGGATCGGCTTGAATAATTTAAGGAACGGAAGTTATCAAAGAACACG
255 AAAATTGCTCAAAGGAAT-GGATCGTCTTGAATAATTTAAGGAACCGAAGTTATCAAAGAACACG
* * * *
10005 TAAAAGCTTGACAAGTTCGAAAGTTCAGCCAAGAACAAATATAGAAACAGTTCTCACGTAAATAA
319 TAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAA
* *
10070 TTTTTTAATTCAATGA-GAAATAGTTGTTTATGAAATGACAAACTATTT
384 GTTTTTAATTCAAAGACGAAA-AGTTGTTTA-GAAATGACAAACTATTT
* * * * *
10118 AGACCAAA-AATGCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGG
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATCGT
* *
10181 CTTGAATAATGTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
65 CTTGAATACTTTAAGGAA-CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
* * *
10246 ATCCACA-AACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTCAATTCAAAGACCAAAAATT
129 ATCCA-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT
* * * * * *
10310 GTTTA-GAAAATGATAACCTATTTAGACTAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GA
193 GTTTACG-AAATGACAAACTATTTAGACCAAATAATG-CGATTTTTCGAGCATGGAATG-TTCGA
* ** * * * *
10372 AAAATTGCACAAAGGAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTAT-AAAGGAGC-TG
255 AAAATTGCTCAAAGGAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATCAAA-GAACACG
* * * *
10435 ATATAAAGTTTGACAAGTT-TAGAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTGTCATGTAA
319 -TA-AAAGTTTGACAAGTTCGA-AAGTTCAG-CCAAGAACAAAGAGAGAAACAATTCTCACGTAA
* * *
10498 AT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACGAAATGAAAAACTTTTT
380 ATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTA-GAAATGACAAACTATTT
* * * * * * *
10548 AGACCAAACGATGCGATTTCCCAAGCGTAGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
* * *
10613 TTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTCATAAAAGCTTGACATGTTCGAAAGTTCA
66 TTGAATACTTTAAGGAAC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * *
10678 GCCAAGAA-CAGAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTG
130 TCCAAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * *
10742 TTTACGAAATGACAAACTATTTAGACCAAATAATGTGATTTTTCGAGCATTGAATGTTCGATAAA
194 TTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATGGAATGTTCGAAAAA
* * * * *
10807 TTGGTCAAAGG-ATAGGATCGACTTGAATAATTTAAGGAACCGAAGATATAAAAGAACTCGTAAA
259 TTGCTCAAAGGAAT-GGATCGTCTTGAATAATTTAAGGAACCGAAGTTATCAAAGAACACGTAAA
* * * * * * *
10871 AGTTTGACAAGTTCGGAAGTTAATCCAAAAACCAAGAGAGACACAATTCTCACGAAAATAAGTTT
323 AGTTTGACAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
10936 TTAATTTAAAGACCAAAAGTTGTTTACAAAATGCCAAACTATTT
388 TTAATTCAAAGACGAAAAGTTGTTTA-GAAATGACAAACTATTT
* * * * * **
10980 AGACCAAATGATGTGA-TTCTCGAGCATGGAATGTTCGGAAAATTGCTCAAATGAATGGAGAGTC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
* * ** * * *
11044 TTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTGGTCCGTAAGTTCG
66 TTGAATACTTTAAGGAA-CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCA
* * * *
11109 TCCGAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGT
130 TCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * * * * *
11174 TTGCAAAATCATAAACTATTTACACCAAA-AGATGCGA-TTTTCGAAGCATGGAATGTTCAAAAA
195 TTACGAAATGACAAACTATTTAGACCAAATA-ATGCGATTTTTCG-AGCATGGAATGTTCGAAAA
* * * * * *
11237 ATGGCTCAAAGGAATGGATAGTCTTGAATACTTTGAGGAACCAAAGTTATCAAAGAACTCGTAAA
258 ATTGCTCAAAGGAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATCAAAGAACACGTAAA
* * * * * *
11302 AGTTCGACTAGTTCGTAAGTTC-GTCCTAGAACCACA-AGAGAAACAATTCTCACGTAAATAGGT
323 AGTTTGACAAGTTCGAAAGTTCAG-CCAAGAA-CAAAGAGAGAAACAATTCTCACGTAAATAAGT
* * * * *
11365 TTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACAAAGTTTTT
386 TTTTAATTCAAAGACGAAAAGTTGTTTAGA-AATGACAAACTATTT
* * * * * * * *
11411 ATACCGAATAATACGA-TTCCCGAGCATGGAAAGTTCAAAAAATTGGTTGAAGGAATGGATCGTC
1 AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
* * * * * ** * ** * *
11475 TT-AAGTACTCTCAGGAACTTAAGTTACAAAAGAGCTATTAAAGGTTCCACAAGTACGGAAGTTC
66 TTGAA-TACTTTAAGGAAC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTC
*
11539 ATCCAAGAACCATGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
129 ATCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATT
11588 GAAAAGGCCA
Statistics
Matches: 1565, Mismatches: 275, Indels: 122
0.80 0.14 0.06
Matches are distributed among these distances:
426 8 0.01
427 78 0.05
428 83 0.05
429 1 0.00
430 145 0.09
431 985 0.63
432 196 0.13
433 68 0.04
434 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (430 bp):
AGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTC
TTGAATACTTTAAGGAACGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAT
CCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
TACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATGGAATGTTCGAAAAATT
GCTCAAAGGAATGGATCGTCTTGAATAATTTAAGGAACCGAAGTTATCAAAGAACACGTAAAAGT
TTGACAAGTTCGAAAGTTCAGCCAAGAACAAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA
ATTCAAAGACGAAAAGTTGTTTAGAAATGACAAACTATTT
Found at i:11164 original size:862 final size:853
Alignment explanation
Indices: 9258--11587 Score: 2602
Period size: 862 Copynumber: 2.7 Consensus size: 853
9248 TTTAATTCAA
** *
9258 AGACCAAAAGATGCGATTTTCGGAGCATGGAATGTTTAGAAAATGGCTCAAAGGAATGGATAGTC
1 AGACC-AAAGATGCGATTTTC-GAGCATGGAATGTTCGGAAAATTGCTCAAA-GAATGGATAGTC
* * * *
9323 TTCAATACTTTGAGGAACCAAACTTATAAAAGAACTCGTAAAAGTTCGACTAGTTCGTAAGTTCG
63 TTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCG
* * * *
9388 TCCTAGAATCACAAGAG-G-AACAATTCTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTT
128 TCC-AGAA-C-CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATT
* * * * * * * *
9451 GTTTACATAATGA-CAGTTTTTAGACCGAATGATACGA-TTCTCGAGCATGGAAAGTTCAAAAAA
190 GTTTAGAAAATGATAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAA
* * * * * ** *
9514 TTGGTCGAAGGAATGGATCGTCTTGAGTACTCTCAA-GAACTTAAGTTACAAAAGAGCT-AT-TA
255 TTGCTCAAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAGTTA-TAAAGAGCTGATATA
*** * * *
9576 AATGTTCTG-CAAGTACGGAAGTTCATCCAAGAACC-ATGAGAAACAATTCTCACGTAGATAAGT
318 AA-GTT-TGACAAGTTTAGAAGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAAT-AGT
* * * * *
9639 TTTTAATTCAAAGGCCAAAAATTGTTTA-GAAAATGATAACCTATTTAGACCAAATGATG-GCAT
380 TTTTAATTCAAAGACCAAAAGTTGTTTACG-AAATGAAAAACTTTTTAGACCAAATGATGCG-AT
* * * * ** *
9702 TTCTCGGGCATGGAAGGCTT-GAAAAATTGTACAAAGGAATGGATCACCTTTAATAGTTTAAGGA
443 TTCCCGAGCATGGAAAG-TTCGAAAAATTGT-CGAAGGAATGGATCGTC-TTAATACTTTAAGGA
* * * * *
9766 ACCGAAGTTATAAAGGAACTGATAAAAAGTTTGACAAGTTCGAAATTTTAGCCAAGAACAAAGAG
505 ACTGAAGTTATAAAAGAACT-AT-AAAAGCTTGACAAGTTCGAAAGTTCAGCCAAGAAC-AAGAG
*
9831 AGAAAGAGTTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAA
567 AGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAA
* * *
9896 CTATTTAGACCAAATAATGCGATTTTTCAAGTATTGAATGTTCGAAAAACTGTTCGAAGGATAGG
632 CTATTTAGACCAAATAATGCGATTTTTCAAGCATTGAATGTTCGAAAAACTGGTCAAAGGATAGG
* * * *
9961 ATCGGCTTGAATAATTTAAGGAACGGAAGTTATCAAAGAACACGTAAAAGCTTGACAAGTTCGAA
697 ATCGACTTGAATAATTTAAGGAACCGAAGATATAAAAGAACACGTAAAAGCTTGACAAGTTCGAA
* * * * * * * * *
10026 AGTTCAGCCAAGAACAAATATAGAAACAGTTCTCACGTAAATAATTTTTTAATTCAATGAGAAAT
762 AGTTAAGCCAAAAACAAAGAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACAAAT
**
10091 AGTTGTTTATGAAATGACAAACTATTT
827 AGTTGTTTACAAAATGACAAACTATTT
* * * * * * * * *
10118 AGACCAAAAATGCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGGATAGGATCGGCT
1 AGACCAAAGATGCGA-TTTTCGAGCATGGAATGTTCGGAAAATTGCTCAAAGAAT-GGATAGTCT
* * * * * * *
10183 TGAATAATGTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAT
64 TGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGT
* * *
10248 CCACAAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTCAATTCAAAGACCAAAAATTGTT
129 CCA-GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTT
* * *
10313 TAGAAAATGATAACCTATTTAGACTAAATGATGTC-ATTTCTCGGGCATGGAATGCTT-GAAAAA
193 TAGAAAATGATAA-CTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTCAAAAAA
* * * * *
10376 TTGCACAAAGGAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGGAGCTGATATAA
255 TTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAA-GAGCTGATATAA
* *
10441 AGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCATGTAAATA-TTTT
319 AGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAA-AGAGAAACAATTCTCACGTAAATAGTTTT
* * *
10505 TAATTCAAAGACGAAAAGTTGATTACGAAATGAAAAACTTTTTAGACCAAACGATGCGATTTCCC
383 TAATTCAAAGACCAAAAGTTGTTTACGAAATGAAAAACTTTTTAGACCAAATGATGCGATTTCCC
* * * * *
10570 AAGCGTAGAATGTTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAA
448 GAGCATGGAAAGTTCGAAAAATTG-TCGAAGGAATGGATCGTCTT-AATACTTTAAGGAACTGAA
*
10635 GTTATAAAAGAACTCATAAAAGCTTGACATGTTCGAAAGTTCAGCCAAGAACAGAGAGAGAAACA
511 GTTATAAAAGAACT-ATAAAAGCTTGACAAGTTCGAAAGTTCAGCCAAGAACA-AGAGAGAAACA
10700 GTTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTA
574 GTTCTCACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTA
* * * *
10765 GACCAAATAATGTGATTTTTCGAGCATTGAATGTTCGATAAATTGGTCAAAGGATAGGATCGACT
639 GACCAAATAATGCGATTTTTCAAGCATTGAATGTTCGAAAAACTGGTCAAAGGATAGGATCGACT
* * * *
10830 TGAATAATTTAAGGAACCGAAGATATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTAAT
704 TGAATAATTTAAGGAACCGAAGATATAAAAGAACACGTAAAAGCTTGACAAGTTCGAAAGTTAAG
* * *
10895 CCAAAAACCAAGAGAGACACAATTCTCACGAAAATAAGTTTTTAATTTAAAGACCAAA-AGTTGT
769 CCAAAAACAAAGAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGA-CAAATAGTTGT
*
10959 TTACAAAATGCCAAACTATTT
833 TTACAAAATGACAAACTATTT
* * *
10980 AGACCAAATGATGTGATTCTCGAGCATGGAATGTTCGGAAAATTGCTCAAATGAATGGAGAGTCT
1 AGACCAAA-GATGCGATTTTCGAGCATGGAATGTTCGGAAAATTGCTCAAA-GAATGGATAGTCT
* * *
11045 TGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTGGTCCGTAAGTTCGT
64 TGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGT
* * *
11110 CCGAGAACCAAGAGAGAAACAATTCTTACGTAAATAAGTTTTTAATTTAAAGACCAAAATTTGTT
129 CC-AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTT
* * *
11175 T-GCAAAATCATAAACTATTTACACCAAAAGATGCGATTT-TCGAAGCATGGAATGTTCAAAAAA
193 TAG-AAAATGAT-AACTATTTAGACCAAATGATGCGATTTCTCG-AGCATGGAATGTTCAAAAAA
* * *
11238 TGGCTCAAAGGAATGGAT-AGTCTTGAATACTTTGAGGAACCAAAGTTATCAAAGAACTCG-TA-
255 TTGCTCAAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTAT-AAAGAGCT-GATAT
* * * *
11300 AAAGTTCGACTAG-TTCGTAAGTTCGTCCTAGAACCACAAGAGAAACAATTCTCACGTAAATAGG
317 AAAGTTTGACAAGTTTAG-AAGTTCGTCCAAGAACCA-AAGAGAAACAATTCTCACGTAAATA-G
* * * * * * * *
11364 TTTTTAATTCGAAGACTAAAAGTTGTTTAC-ATAATGACAAAGTTTTTATACCGAATAATACGA-
379 TTTTTAATTCAAAGACCAAAAGTTGTTTACGA-AATGAAAAACTTTTTAGACCAAATGATGCGAT
* * * *
11427 TTCCCGAGCATGGAAAGTTCAAAAAATTGGTTGAAGGAATGGATCGTCTTAAGTACTCTCAGGAA
443 TTCCCGAGCATGGAAAGTTCGAAAAATT-GTCGAAGGAATGGATCGTCTTAA-TACTTTAAGGAA
* * * * * * * * * *
11492 CTTAAGTTACAAAAGAGCTATTAAAGGTTCCACAAGTACGGAAGTTCATCCAAGAACCATGAGAG
506 CTGAAGTTATAAAAGAACTATAAAAGCTT-GACAAGTTCGAAAGTTCAGCCAAGAA-CAAGAGAG
*
11557 AAACAATTCTCACGTAAATAAGTTTTTAATT
569 AAACAGTTCTCACGTAAATAAGTTTTTAATT
11588 GAAAAGGCCA
Statistics
Matches: 1229, Mismatches: 197, Indels: 86
0.81 0.13 0.06
Matches are distributed among these distances:
857 6 0.00
858 6 0.00
859 146 0.12
860 14 0.01
861 90 0.07
862 721 0.59
863 218 0.18
864 9 0.01
865 19 0.02
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (853 bp):
AGACCAAAGATGCGATTTTCGAGCATGGAATGTTCGGAAAATTGCTCAAAGAATGGATAGTCTTG
AATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACTAGTTCGTAAGTTCGTCC
AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAG
AAAATGATAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCAAAAAATTGCTC
AAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAGAGCTGATATAAAGTTTGA
CAAGTTTAGAAGTTCGTCCAAGAACCAAAGAGAAACAATTCTCACGTAAATAGTTTTTAATTCAA
AGACCAAAAGTTGTTTACGAAATGAAAAACTTTTTAGACCAAATGATGCGATTTCCCGAGCATGG
AAAGTTCGAAAAATTGTCGAAGGAATGGATCGTCTTAATACTTTAAGGAACTGAAGTTATAAAAG
AACTATAAAAGCTTGACAAGTTCGAAAGTTCAGCCAAGAACAAGAGAGAAACAGTTCTCACGTAA
ATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAATG
CGATTTTTCAAGCATTGAATGTTCGAAAAACTGGTCAAAGGATAGGATCGACTTGAATAATTTAA
GGAACCGAAGATATAAAAGAACACGTAAAAGCTTGACAAGTTCGAAAGTTAAGCCAAAAACAAAG
AGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACAAATAGTTGTTTACAAAATGACA
AACTATTT
Found at i:12576 original size:216 final size:215
Alignment explanation
Indices: 11612--15476 Score: 3381
Period size: 216 Copynumber: 17.9 Consensus size: 215
11602 TTTTTAATTC
* * * * ** * *
11612 AAAGAACTCATAAAAGCTTGACAGGTTCGAAAGTTCAACCAAGAACAAAGAGAGAAACAGTTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* *
11677 ACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAA
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * * * *
11742 ATAATGCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATAGGCTTGAAT
131 ATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATCGTCTTGAAT
*
11806 AATTTAAGGAACCGAAGTTATA
195 ACTTT-AGGAACCGAAGTTATA
* * * * *
11828 AAAGAACTCGTCAAAGTTTGGCAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * **
11893 ACGTAAATAAGTTTTCAATTCAAAGACCAAAAGATGATTACAAAATTAAAAAAAC-ATTTAGAAT
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GACAAACTATTTAGACC
* * * * * * * * * *
11957 GAATGGTGCGATTTCCCGAGCCTGGAATGCTCTAAAAATTAGTCGAAGGAATGGGTCATCTTTAA
129 AAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAA
* * * *
12022 TGCTCTCAGAAACCGAACTTATA
194 TACT-TTAGGAACCGAAGTTATA
* *
12045 AAAGAACTGGTAAATA-TTTGACAAGTTC-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCC
1 AAAGAACTCGTAAA-AGTTTGACAAGTTCGT-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* *
12108 TCATGTAAATAAGTTTTTAATTCAAAGACCGAAAGGTT-TTTACAAAATGACAAACTATTTAGAC
64 TCACGTAAATAAGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * * * *
12172 TAAATGATGAGATTTCCCGAGCATGGAATGTTAGAAAAA-TGGCACAAAGGAATGGATCGTCTTT
128 CAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGG-TCGAAGGAATGGATCGTCTTG
* *
12236 AATACTCTTAAGAACCAAAGTTATAATA
192 AATACT-TTAGGAACCGAAG-T-T-ATA
* ** * * * * ** *
12264 AAAGAACTTGTAAATTTTTGAAAATTTTGAAAGTTAATCCAAGAACCAGGAGAGAAA-ATATTCT
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCT
* * * * * * * * *
12328 CATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAGCTATTTTGACCA
65 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * * *
12393 AATGATGCAATTTTCCGAGAAAGGAATGTTCGAAAAATTGGTTGAAGGAGTGCATCTTCTTAAAT
130 AATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAAT
*
12458 ACTATTAGGAACCAAAGTTATA
195 ACT-TTAGGAACCGAAGTTATA
* *
12480 AAAGAACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * *
12545 ACGTAAATAAGTTTTAAATTTAAAGACCAAAATTTGTTTGCAAAA-GAACAAATTATTTAGACCA
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG-ACAAACTATTTAGACCA
* * * * ** *
12609 AAAGATGCGATTTTCGGAGCATGGAATGATTAG-AAAA-TGGCTCAAAGGAACAGATAGTCTTGA
130 AATGATGCGATTTTCCGAGCATGGAATG-TTCGAAAAATTGG-TCGAAGGAATGGATCGTCTTGA
* *
12672 ATACTTTGAGGAACCAAAGTTATC
193 ATACTTT-AGGAACCGAAGTTATA
* * * * * *
12696 AAAGAACTCGTATAACTTCGACTAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGAAACAATTTT
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCT
* * * * * * *
12760 CACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTACATAATGACAAAGTTTTTAGACCG
65 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * ** * * *
12825 AATGATACGATTCT-CGAGCATCAAAAGTTTGAAAAATTGGTCGAAGGAATGGATCGTCTTGAGT
130 AATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAAT
* ** *
12889 ACTATCAGGAACTTAAGTTACA
195 ACT-TTAGGAACCGAAGTTATA
* ** * * * * *
12911 AAA-AGCTATTAAACGTTCTG-CAAGTTGGAAAGTTCGTCCAAGAACCATGAGGATAAACAATTC
1 AAAGAACTCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTC
* * * *
12974 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTAGACC
64 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * ** * **
13039 ACAA-GATGTC-ATTTCTCAG-GCATGGAATGCTT-GGAAAATTGCACAAAGGAATGGATCACCT
129 A-AATGATG-CGATTT-TCCGAGCATGGAATG-TTCGAAAAATTGGTCGAAGGAATGGATCGTCT
* *
13100 TTAATAGTTTAAGGAACCGAAGTTATA
190 TGAATACTTT-AGGAACCGAAGTTATA
* * * * *
13127 AAGGAACT-GATAAAAAGTTTGACAAGTTTAG-AAGTTTGTCCATGAACCAAGGGAGAAACAATT
1 AAAGAACTCG-T-AAAAGTTTGACAAG-TTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * * * * * *
13190 GTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACGAAATGAAAAACTTTTTAGAC
63 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * * * *
13253 GAAACGATGCGATTTCCCAAGCGTAGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGA
128 CAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGA
*
13318 ATACTTTAAGGAACTGAAGTTATA
193 ATACTTT-AGGAACCGAAGTTATA
* * * * *
13342 AAAGAACTCATAAAAGCTTGACAAGTTC-TAAAGTTCAG-CCAAGAACAAAGAGATAAACAGTTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGT-AAGTTC-GTCCAAGAACCAAGAGAGAAACAATTC
* * *
13405 TCACGTAAATAAGTTTTTATTTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
64 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* ** * * *
13470 AAATAATGCGATTCCCCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGA
129 AAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAAT-GGATCGTCTTGA
* *
13534 AGAATTTAAGGAACCGAAGTTATA
193 ATACTTT-AGGAACCGAAGTTATA
* * * *
13558 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAAAACCAAGAGAGAAACAGTTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * ** ***
13623 ACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAAAATTAAAAAAAAATTTAGAATG
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-TGACAAACTATTTAGACCA
* * * * * *
13688 AATGATGCGA-TTTCTCGAGCCTGGAATGCTCGAAAAATTAGTCGAAGGAATGGGTCATCTTTAA
130 AATGATGCGATTTTC-CGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAA
* * * *
13752 TGCTCTCAGAAATCGAAGTTATA
194 TACT-TTAGGAACCGAAGTTATA
* *
13775 AAAGAACTGGTAAATA-TTTGACAAGTTC-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCC
1 AAAGAACTCGTAAA-AGTTTGACAAGTTCGT-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * * * *
13838 TCATGTAAATAAGTTTTTAATTTAAAGACTGAAAGGTT-TTCACAAAATGACAAACTATTTAGAC
64 TCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * * ** * * *
13902 CAATTGATGCAATTTCCCGAGCATGGAATATTTGAAAAATTGCACAAAGGAATGGATCATCTTTA
128 CAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGA
** *
13967 ATACTCTTAACAACCAAAGTTATAATA
193 ATACT-TTAGGAACCGAAG-T-T-ATA
* ** * * * ** *
13994 AAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACTAAGAGAGAAA-ATATTCT
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCT
*** * * * * * *
14058 CATACAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCA
65 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * * *
14123 AATGATGCAATTTTCTGAGAATGGAATGTTAGAAAAATTGGTTGAAGGAATGAATCTTCTTAAAT
130 AATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAAT
*
14188 ACTATTAGGAACCAAAGTTATA
195 ACT-TTAGGAACCGAAGTTATA
* ** * ** * **
14210 AAAGAACTTGTAAATTTTTTA-AGAGTTCGGCAGTTCATCCAAGAA-CTGGAAGAGAAACAATTC
1 AAAGAACTCGTAAAAGTTTGACA-AGTTCGTAAGTTCGTCCAAGAACCAAG-AGAGAAACAATTC
*
14273 TCACGTAAATAAGTTTCTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
64 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * *
14338 AAATGATGCGA-TTTCTCGAGCATGGAATGTTC-AGAAAA-TGGCTCAAATGAATGGATAGTCTT
129 AAATGATGCGATTTTC-CGAGCATGGAATGTTCGA-AAAATTGG-TCGAAGGAATGGATCGTCTT
* *
14400 GAATACTTTAAGGAACCAAAGTTGTA
191 GAATACTTT-AGGAACCGAAGTTATA
* * * *
14426 AAAGAACTCGTAAACGTTTGACTAGTCCGTAAGTTCGTCCGAGAACCAAGAGAGAAACAATTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * * *
14491 ACATAAATAATTTTTTAATTTAAAGACCAAAATTTGTTTGCAAAATCACAAACTATTTAGAACAA
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
* * * ** ** *
14556 AAGATGCGA-TTTCCGGAGCTTGGAATGTTC-AGAAAA-TGGCTCAAAGGAA-CCAAAGT-TATC
131 ATGATGCGATTTTCC-GAGCATGGAATGTTCGA-AAAATTGG-TCGAAGGAATGGATCGTCT-TG
* *
14616 AGA-AC--TCGTAA---AAGTTAT-
192 A-ATACTTTAGGAACCGAAGTTATA
* * * * *
14634 -CAGAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATTCT
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCT
** * * * * * * *
14697 CACGTAAATTGGTTTTTAATTTAATGACTAAAAGTTGTTTACATAATGACAAAGTTTTTAGACCG
65 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * *
14762 AATGATACGA--TTCCTGAACATGGAAAGTTCGAAAAATTGGTCGAATGAATGGATCGTCTTGAG
130 AATGATGCGATTTTCC-GAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAA
** *
14825 TACTCTTAGGAACTTAAGTTACA
194 TACT-TTAGGAACCGAAGTTATA
* ** * * * * *
14848 AAAGAGCTATTAAACGTTCCG-CAAGTGCGGAAGTTCGTCCAAGAACCATGAGGAGAAACAATTC
1 AAAGAACTCGTAAAAGTT-TGACAAGTTCGTAAGTTCGTCCAAGAACCAAGA-GAGAAACAATTC
* * * * * *
14912 TCACGTAAATAAGTTTTTAATTCTAAGACCAAAAATTGTTTAGAAAATGATAACCTATTTCGACC
64 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * * ** * **
14977 AAATGATGTC-A-TCTCTCGCGCATGGAATGCTT-GGAAAATTGCACAAAGGAATGGATCACCTT
129 AAATGATG-CGATTTTC-CGAGCATGGAATG-TTCGAAAAATTGGTCGAAGGAATGGATCGTCTT
* *
15039 TAATAGTTTAAGGAACCGAAGTTATA
191 GAATACTTT-AGGAACCGAAGTTATA
* *
15065 AAGGAACT-GATAAAAAGTTTGACAAGTTTAG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATT
1 AAAGAACTCG-T-AAAAGTTTGACAAG-TTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
* * ** * * *
15128 GTCATGTAAAT-A-TTTTTAATTCAAAGATGAAAAGTTGATTACGAAATGAAAAACTATTTAGAC
63 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * * * *
15191 CAAACGATGCGATTTCCCAAGCGTAGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGA
128 CAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGA
*
15256 ATACTTTAAGGAACTGAAGTTATA
193 ATACTTT-AGGAACCGAAGTTATA
* *
15280 AAAGAACTGGTAAATA-TTTGACAAGTTC-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCC
1 AAAGAACTCGTAAA-AGTTTGACAAGTTCGT-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* * *
15343 TCATGTAAATAAGTTTTTAATTCAAAGACTGAAAGGTT-TTTACAAAATGACAAACTATTTAGAC
64 TCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * ** * *
15407 CAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCGTCTTTA
128 CAAATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGA
15472 ATACT
193 ATACT
15477 CTCAAAAACC
Statistics
Matches: 2936, Mismatches: 596, Indels: 234
0.78 0.16 0.06
Matches are distributed among these distances:
206 27 0.01
207 124 0.04
208 2 0.00
209 6 0.00
210 4 0.00
212 3 0.00
213 11 0.00
214 144 0.05
215 431 0.15
216 1293 0.44
217 451 0.15
218 102 0.03
219 335 0.11
220 3 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.28
Consensus pattern (215 bp):
AAAGAACTCGTAAAAGTTTGACAAGTTCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA
ATGATGCGATTTTCCGAGCATGGAATGTTCGAAAAATTGGTCGAAGGAATGGATCGTCTTGAATA
CTTTAGGAACCGAAGTTATA
Found at i:14334 original size:868 final size:864
Alignment explanation
Indices: 11612--15496 Score: 3878
Period size: 868 Copynumber: 4.5 Consensus size: 864
11602 TTTTTAATTC
* * * * * * *
11612 AAAGAACTCATAAAAGCTTGACAGGTTCGAAAGTTCAACCAAGAACAAAGAGAGAAACAGTTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
*
11677 ACGTAAATAAGTTTTTAATTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAA
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAA
** * *
11742 ATAATGCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATAGGCTTGAAT
131 ATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGTCGAAGGAAT-GGATAGTCTTGAAT
* * * * *
11806 AATTTAAGGAACCGAAGTTATAAAAGAACTCGTCAAAGTTTGGCAAGTTCGGAAGTTCATCCAAA
194 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
* * *
11871 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGATGATTACAA
259 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * * * * * *
11936 AATTAAAAAAACATTTAGAATGAATGGTGCGATTTCCCGAGCCTGGAATGCTCTAAAAATTAGTC
324 AA-TAACAAAATATTTAGAACGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTAGTC
* *
12001 GAAGGAATGGGTCATCTTTAATGCTCTCAGAAACCGAACTTATAAAAGAACTGGTAAATATTTGA
388 GAAGGAATGGATCATCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATATTTGA
*
12066 CAAGTTCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATT
453 CAAGTTCTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTAATT
* * *
12130 CAAAGACCGAAAGGTT-TTTACAAAATGACAAACTATTTAGACTAAATGATG-AGATTTCCCGAG
518 CAAAGACTGAAAAGTTGTTTACAAAATGACAAACTATTTAGAC-CAATGATGCA-ATTTCCCGAG
* * * *
12193 CATGGAATGTTAGAAAAATGGCACAAAGGAATGGATCGTCTTTAATACTCTTAAGAACCAAAGTT
581 CATGGAATATTTGAAAAATTGCACAAAGGAATGGATCATCTTTAATACTCTTAAGAACCAAAG-T
* *
12258 ATAATAAAAGAACTTGTAAATTTTTGAAAATTTTGAAAGTTAATCCAAGAACCAGGAGAGAAA-A
645 -T-ATAAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAACA
* *
12322 TATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAGCTATTT
708 -ATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCAAATGACAAACTATTT
* * * * *
12387 TGACCAAATGATGCAATTTTCCGAGAAAGGAATGTTCGAAAAATTGGTTGAAGGAGTGCATCTTC
772 TGACCAAATGATGCAATTTTCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTC
12452 TTAAATACTATT-AGGAACCAAAGTTATA
837 TTAAATACT-TTAAGGAACCAAAGTTATA
* * * *
12480 AAAGAACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * *
12545 ACGTAAATAAGTTTTAAATTTAAAGACCAAAATTTGTTTGC-AAAAGAACAAATTATTTAGACCA
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACGAAATG-ACAAACTATTTAGACCA
* * * * **
12609 AA-AGATGCGATTTTCGGAGCATGGAATGATTAG-AAAATGGCTCAAAGGAACAGATAGTCTTGA
130 AATA-ATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATGG-TCGAAGGAATGGATAGTCTTGA
* * * * * * * * *
12672 ATACTTTGAGGAACCAAAGTTATCAAAGAACTCGTATAACTTCGACTAGTTCGTAAGTTCGTCCT
192 ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA
* * * *
12737 AGAACCACA-AGAGAAACAATTTTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTTA
257 AGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * * * * * ** * * *
12801 CATAATGACAAAGTTTTTAGACCGAATGATACGA-TTCTCGAGCATCAAAAGTTTGAAAAATTGG
321 CAAAATAACAAAATATTTAGAACGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTAG
* * * * * * ** * * ** **
12865 TCGAAGGAATGGATCGTCTTGAGTACTATCAGGAACTTAAGTTACAAAA-AGCTATTAAACGTTC
386 TCGAAGGAATGGATCATCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATATT-
* * * *
12929 TG-CAAGTT-GGAAAGTTCGTCCAAGAACCATGAGGATAAACAATTCTCACGTAAATAAGTTTTT
450 TGACAAGTTCTGAAAGTTCGTCCAAGAACCAAGA-GAGAAACAATCCTCACGTAAATAAGTTTTT
* * * * * * *
12992 AATTCAAAGAC-CAAAAATTGTTTAGAAAATGATAACCTATTTAGACCACAAGATGTC-ATTTCT
514 AATTCAAAGACTGAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA-ATGATG-CAATTTCC
** * * *
13055 C-AGGCATGGAATGCTTGGAAAATTGCACAAAGGAATGGATCACCTTTAATAGT-TTAAGGAACC
577 CGA-GCATGGAATATTTGAAAAATTGCACAAAGGAATGGATCATCTTTAATACTCTTAA-GAACC
* * ** * ** * *
13118 GAAGTTATAAAGGAAC-TGATAAAAAGTTTGACAAGTTT-AGAAGTTTGTCCATGAACCAAGGGA
640 AAAGTTATAAAAGAACTTG-T-AAATTTTTGAAAAGTTTGA-AAGTTAATCCAAGAACCAAGAGA
* * * * * * * *
13181 GAAACAATTGTCATGTAAAT--ATTTTTAATTCAAAGACGAAAAGTTGATTACGAAATGAAAAAC
702 GAAACAATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCAAATGACAAAC
* * * * * ** *
13244 T-TTTTAGACGAAACGATGCGATTTCCCAAGCGTAGAATGTTCGAAAAATTGCTCGAAGGAATGG
767 TATTTT-GACCAAATGATGCAATTTTCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGG
* * **
13308 ATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
831 ATCTTCTTAAATACTTTAAGGAACCAAAGTTATA
* * ** * * * *
13342 AAAGAACTCATAAAAGCTTGACAAGTTCTAAAGTTCAGCCAAGAACAAAGAGATAAACAGTTCTC
1 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
* *
13407 ACGTAAATAAGTTTTTATTTCAAAGAGCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAA
66 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAA
* * * * *
13472 ATAATGCGATTCCCCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGAAG
131 ATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGTCGAAGGAAT-GGATAGTCTTGAAT
* * *
13536 AATTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAA
194 ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAG
* *
13601 AACCAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTACAA
259 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAA
* * * * * *
13666 AATTAAAAAAAAATTTAGAATGAATGATGCGATTTCTCGAGCCTGGAATGCTCGAAAAATTAGTC
324 AA-TAACAAAATATTTAGAACGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTAGTC
* *
13731 GAAGGAATGGGTCATCTTTAATGCTCTCAGAAATCGAAGTTATAAAAGAACTGGTAAATATTTGA
388 GAAGGAATGGATCATCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATATTTGA
*
13796 CAAGTTCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATT
453 CAAGTTCTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTAATT
* * *
13860 TAAAGACTGAAAGGTT-TTCACAAAATGACAAACTATTTAGACCAATTGATGCAATTTCCCGAGC
518 CAAAGACTGAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAA-TGATGCAATTTCCCGAGC
*
13924 ATGGAATATTTGAAAAATTGCACAAAGGAATGGATCATCTTTAATACTCTTAACAACCAAAGTTA
582 ATGGAATATTTGAAAAATTGCACAAAGGAATGGATCATCTTTAATACTCTTAAGAACCAAAG-T-
*
13989 TAATAAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACTAAGAGAGAAA-AT
645 T-ATAAAAGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAACA-
* *
14053 ATTCTCATACAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTT
708 ATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCAAATGACAAACTATTTT
* * * * *
14118 GACCAAATGATGCAATTTTCTGAGAATGGAATGTTAGAAAAATTGGTTGAAGGAATGAATCTTCT
773 GACCAAATGATGCAATTTTCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTCT
14183 TAAATACTATT-AGGAACCAAAGTTATA
838 TAAATACT-TTAAGGAACCAAAGTTATA
* ** * * **
14210 AAAGAACTTGTAAATTTTTTA-AGAGTTCGGCAGTTCATCCAAGAA-CTGGAAGAGAAACAATTC
1 AAAGAACTCGTAAAAGTTTGACA-AGTTCGGAAGTTCATCCAAGAACCAAG-AGAGAAACAATTC
* *
14273 TCACGTAAATAAGTTTCTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
64 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
* * * *
14338 AAATGATGCGATTTCTCGAGCATGGAATGTTC-AGAAAATGGCTCAAATGAATGGATAGTCTTGA
129 AAATAATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATGG-TCGAAGGAATGGATAGTCTTGA
* * * * * * *
14402 ATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAACGTTTGACTAGTCCGTAAGTTCGTCCG
192 ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA
* * * * *
14467 AGAACCAAGAGAGAAACAATTCTCACATAAATAATTTTTTAATTTAAAGACCAAAATTTGTTTGC
257 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * * * *
14532 AAAATCACAAACTATTTAGAACAAAAGATGCGATTTCCGGAGCTTGGAATGTTC-AGAAAA-TGG
322 AAAATAACAAAATATTTAGAACGAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTAG
* ** * * * ** * * *
14595 CTCAAAGGAA-CCA-AAGT-TATCA-GAACTC-GTAA---AAGTTAT--CAGAACTCGTAAA-AG
386 -TCGAAGGAATGGATCA-TCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATA-
* * * * * * **
14649 TTCGACCAGTTC-GTAAGTTCGTCCTAGAACCACA-AGAGGAACAATTCTCACGTAAATTGGTTT
448 TTTGACAAGTTCTGAAAGTTCGTCCAAGAACCA-AGAGAGAAACAATCCTCACGTAAATAAGTTT
* * * * * * *
14712 TTAATTTAATGACT-AAAAGTTGTTTACATAATGACAAAGTTTTTAGACCGAATGATACGA-TTC
512 TTAATTCAAAGACTGAAAAGTTGTTTACAAAATGACAAACTATTTAGACC-AATGATGCAATTTC
* * * ** * * * * * * *
14775 CTGAACATGGAA-AGTTCGAAAAATTGGTCGAATGAATGGATCGTCTTGAGTACTCTTAGGAACT
576 CCGAGCATGGAATA-TTTGAAAAATTGCACAAAGGAATGGATCATCTTTAATACTCTTAAGAACC
* * * * ** * ** * ** *
14839 TAAGTTACAAAAGAGCTAT-TAAACGTTCCG-CAAGTGCGGAAGTTCGTCCAAGAACCATGAGGA
640 AAAGTTATAAAAGAACT-TGTAAA-TTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGA-GA
* * * * * * * ** * *
14902 GAAACAATTCTCACGTAAATAAGTTTTTAATTCTAAGACCAAAAATTGTTTAGAAAATGATAACC
702 GAAACAATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCAAATGACAAAC
* * * * * * *
14967 TATTTCGACCAAATGATGTC-A-TCTCTCGCGCATGGAATGCTT-GGAAAATTGCACAAAGGAAT
767 TATTTTGACCAAATGATG-CAATTTTC-CGAGAATGGAATG-TTCGAAAAATTGCTCGAAGGAAT
** * * *
15029 GGATCACCTTTAATAGTTTAAGGAACCGAAGTTATA
829 GGATCTTCTTAAATACTTTAAGGAACCAAAGTTATA
* ** * *
15065 AAGGAACT-GATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTG
1 AAAGAACTCG-T-AAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTC
* ** * *
15129 TCATGTAAAT-A-TTTTTAATTCAAAGATGAAAAGTTGATTACGAAATGAAAAACTATTTAGACC
64 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
** * * * *
15192 AAACGATGCGATTTCCCAAGCGTAGAATGTTCGAAAAATTGCTCGAAGGAATGGATCA-TCTTGA
129 AAATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAA-TGGTCGAAGGAATGGAT-AGTCTTGA
* * *
15256 ATACTTTAAGGAACTGAAGTTATAAAAGAACTGGTAAATA-TTTGACAAGTTCTGAAGTTCGTCC
192 ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTCGGAAGTTCGTCC
* * * *
15320 AAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACTGAAAGGTT-TTT
256 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTT
* * * * *
15384 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATT-
320 ACAAAATAACAAAATATTTAGAACGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTA
* * * * * *
15448 GCACAAAGGAATGGATCGTCTTTAATACTCTCAAAAACCAAAGTTATAA
385 G-TCGAAGGAATGGATCATCTTTAATGCTCTCAGAAACCGAAGTTATAA
15497 TAAAAGAATT
Statistics
Matches: 2445, Mismatches: 482, Indels: 185
0.79 0.15 0.06
Matches are distributed among these distances:
854 302 0.12
855 149 0.06
856 55 0.02
857 69 0.03
858 106 0.04
859 3 0.00
860 7 0.00
861 18 0.01
862 368 0.15
863 45 0.02
864 239 0.10
865 99 0.04
866 237 0.10
867 96 0.04
868 639 0.26
869 13 0.01
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (864 bp):
AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCTC
ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAA
ATAATGCGATTTCCCGAGCATGGAATGTTCGAAAAATGGTCGAAGGAATGGATAGTCTTGAATAC
TTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA
CCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA
TAACAAAATATTTAGAACGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTAGTCGAA
GGAATGGATCATCTTTAATGCTCTCAGAAACCGAAGTTATAAAAGAACTGGTAAATATTTGACAA
GTTCTGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAGTTTTTAATTCAA
AGACTGAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAATGATGCAATTTCCCGAGCATGG
AATATTTGAAAAATTGCACAAAGGAATGGATCATCTTTAATACTCTTAAGAACCAAAGTTATAAA
AGAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAACAATTCTCAT
GCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCAAATGACAAACTATTTTGACCAAAT
GATGCAATTTTCCGAGAATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCTTCTTAAATACT
TTAAGGAACCAAAGTTATA
Found at i:14631 original size:19 final size:19
Alignment explanation
Indices: 14607--14650 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
14597 CAAAGGAACC
14607 AAAGTTATCAGAACTCGTA
1 AAAGTTATCAGAACTCGTA
14626 AAAGTTATCAGAACTCGTA
1 AAAGTTATCAGAACTCGTA
14645 AAAGTT
1 AAAGTT
14651 CGACCAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (19 bp):
AAAGTTATCAGAACTCGTA
Found at i:15392 original size:431 final size:428
Alignment explanation
Indices: 11612--15496 Score: 3338
Period size: 431 Copynumber: 9.0 Consensus size: 428
11602 TTTTTAATTC
* * * * ** * *
11612 AAAGAACTCATAAAAGCTTGACAGGTTCGAAAGTTCAACCAAGAACAAAGAGAGAAACAGTTCTC
1 AAAGAACT-GTAAAAGTTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
11677 ACGTAAATAAGTTTTTAATTCAAAGA-GCAAAAGTTGTTTACGAAATGACAAACTATTTAGACCA
64 ACGTAAATAAGTTTTTAATTCAAAGACG-AAAAGTTGTTTACGAAATGACAAACTATTTAGACCA
* ** * * * * *
11741 AATAATGCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGAT-AGGCTTGA
128 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAAT-GGATCA-TCTTGA
* * * * * *
11804 ATAATTTAAGGAACCGAAGTTATAAAAGAACTCGTCAAAGTTTGGCAAGTTCGGAAGTTCATCCA
191 ATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAAATTTGACAAGTTCTGAAGTTCGTCCA
* * * *
11869 AAAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGATGATTAC
255 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * *** * * *
11934 AAAATTAAAAAAAC-ATTTAGAATGAATGGTGCGATTTCCCGAGCCTGGAATGCTCT-AAAAATT
320 AAAA-T-GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-T-TGAAAAATT
* * * * *
11997 AG-TCGAAGGAATGGGTCATCTTTAATGCTCTCAGAAACCGAACTTATA
381 -GCTCGAAGGAATGGATCATCTTTAATACTTTCAGGAACCGAAGTTATA
*
12045 AAAGAACTGGTAAATA-TTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCT
1 AAAGAACT-GTAAA-AGTTTGACAAGTT-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
12109 CATGTAAATAAGTTTTTAATTCAAAGACCGAAAGGTT-TTTACAAAATGACAAACTATTTAGACT
63 CACGTAAATAAGTTTTTAATTCAAAGA-CGAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
* * * * * *
12173 AAATGATGAGATTTCCCGAGCATGGAATGTTAGAAAAATGGCACAAAGGAATGGATCGTCTTTAA
127 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAA
* * * * **
12238 TACTCTTAA-GAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGA-AAATTTTGAAAGTTAA
192 TACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTCGTAAA-ATTTGACAAGTTCTG-AAGTTCG
* * * * * *
12301 TCCAAGAACCAGGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACACCAAAAGTTG
251 TCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * * * * *
12365 TTTACCATATGACAAGCTATTTTGACCAAATGATGCAATTT-TCCGAGAAAGGAATGTTCGAAAA
315 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTT-GAAAA
* * * * * * *
12429 ATTGGTTGAAGGAGTGCATCTTCTTAAATACTATT-AGGAACCAAAGTTATA
378 ATTGCTCGAAGGAATGGATCATCTTTAATACT-TTCAGGAACCGAAGTTATA
* **
12480 AAAGAACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
1 AAAGAACT-GTAAAAGTTTGACAAGTTTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * * * * *
12545 ACGTAAATAAGTTTTAAATTTAAAGACCAAAATTTGTTTGC-AAAAGAACAAATTATTTAGACCA
64 ACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACGAAATG-ACAAACTATTTAGACCA
* * * * * **
12609 AAAGATGCGATTTTCGGAGCATGGAATGATTAG-AAAATGGCTCAAAGGAACAGAT-AGTCTTGA
128 AATGATGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCAAAGGAATGGATCA-TCTTGA
* * * * *
12672 ATACTTTGAGGAACCAAAGTTATCAAAGAACTCGTATAACTTCGACTAGTTC-GTAAGTTCGTCC
191 ATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTA-AAATTTGACAAGTTCTG-AAGTTCGTCC
* * * * *
12736 TAGAACCACA-AGAGAAACAATTTTCACGTAAATAGGTTTTTAATTCGAAGACTAAAAGTTGTTT
254 AAGAACCA-AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * ** *
12800 ACATAATGACAAAGTTTTTAGACCGAATGATACGA-TTCTCGAGCATCAAAAGTTTGAAAAATTG
318 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAAAAATTG
* * * * * ** *
12864 GTCGAAGGAATGGATCGTCTTGAGTACTATCAGGAACTTAAGTTACA
382 CTCGAAGGAATGGATCATCTTTAATACTTTCAGGAACCGAAGTTATA
* * * * * *
12911 AAA-AGCTATTAAACGTTCTG-CAAGTTGGAAAGTTCGTCCAAGAACCATGAGGATAAACAATTC
1 AAAGAACT-GTAAAAGTT-TGACAAGTTTG-AAGTTCGTCCAAGAACCAAGA-GAGAAACAATTC
* * * *
12974 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAATTGTTTA-GAAAATGATAACCTATTTAGAC
62 TCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACG-AAATGACAAACTATTTAGAC
* * * *
13038 CACAA-GATGTC-ATTTCTC-AGGCATGGAATGCTT-GGAAAATTGCACAAAGGAATGGATCACC
126 CA-AATGATG-CGATTTCCCGA-GCATGGAATG-TTCGAAAAATTGCTCAAAGGAATGGATCATC
* * * *
13099 TTTAATAGTTTAAGGAACCGAAGTTATAAAGGAACT-GATAAAAAGTTTGACAAGTT-TAGAAGT
187 TTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCG-T-AAAA-TTTGACAAGTTCT-GAAGT
* * * * * *
13162 TTGTCCATGAACCAAGGGAGAAACAATTGTCATGTAAAT-A-TTTTTAATTCAAAGACGAAAAGT
248 TCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * * * * * * *
13225 TGATTACGAAATGAAAAACTTTTTAGACGAAACGATGCGATTTCCCAAGCGTAGAATGTTCGAAA
313 TGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT-GAAA
* * * *
13290 AATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATA
377 AATTGCTCGAAGGAATGGATCATCTTTAATACTTTCAGGAACCGAAGTTATA
* * * * * *
13342 AAAGAACTCATAAAAGCTTGACAAGTTCTAAAGTTCAG-CCAAGAACAAAGAGATAAACAGTTCT
1 AAAGAACT-GTAAAAGTTTGACAAGTT-TGAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCT
*
13406 CACGTAAATAAGTTTTTATTTCAAAGA-GCAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
63 CACGTAAATAAGTTTTTAATTCAAAGACG-AAAAGTTGTTTACGAAATGACAAACTATTTAGACC
* * * * * * **
13470 AAATAATGCGATTCCCCGAGCATTGAATGTTCGAAAAACTGGTCGAAGG-ATAGGATCGGCTTGA
127 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAAT-GGATCATCTTGA
* * * * *
13534 AGAATTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCATCCA
191 ATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAA-TTTGACAAGTTCTGAAGTTCGTCCA
* * *
13599 AAAACCAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTCAATTCAAAGACCAAAAGTTGTTTAC
255 AGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * ** *** * *
13664 AAAATTAAAAAAAAATTTAGAATGAATGATGCGATTTCTCGAGCCTGGAATGCTCGAAAAATTAG
320 AAAA-TGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAAAAATT-G
* * * * *
13729 -TCGAAGGAATGGGTCATCTTTAATGCTCTCAGAAATCGAAGTTATA
382 CTCGAAGGAATGGATCATCTTTAATACTTTCAGGAACCGAAGTTATA
*
13775 AAAGAACTGGTAAATA-TTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCT
1 AAAGAACT-GTAAA-AGTTTGACAAGTT-TGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * * *
13839 CATGTAAATAAGTTTTTAATTTAAAGACTGAAAGGTT-TTCACAAAATGACAAACTATTTAGACC
63 CACGTAAATAAGTTTTTAATTCAAAGAC-GAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
* * * * * *
13903 AATTGATGCAATTTCCCGAGCATGGAATATTTGAAAAATTGCACAAAGGAATGGATCATCTTTAA
127 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAA
* * * * **
13968 TACTCTTAA-CAACCAAAGTTATAATAAAAGAACTTGTAAATTTTTGAAAAGTT-TGAAAGTTAA
192 TACT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTCGTAAA-ATTTGACAAGTTCTG-AAGTTCG
* *** * * *
14031 TCCAAGAACTAAGAGAGAAA-ATATTCTCATACAAATAAATTTTAAATTCAAACACCAAAAGTTG
251 TCCAAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* * * * *
14095 TTTACCATATGACAAACTATTTTGACCAAATGATGCAATTT-TCTGAGAATGGAATGTTAGAAAA
315 TTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTT-GAAAA
* * * * * *
14159 ATTGGTTGAAGGAATGAATCTTCTTAAATACTATT-AGGAACCAAAGTTATA
378 ATTGCTCGAAGGAATGGATCATCTTTAATACT-TTCAGGAACCGAAGTTATA
** * * * * **
14210 AAAGAACTTGTAAATTTTTTA-AGAGTTCGGCAGTTCATCCAAGAA-CTGGAAGAGAAACAATTC
1 AAAGAAC-TGTAAAAGTTTGACA-AGTT-TGAAGTTCGTCCAAGAACCAAG-AGAGAAACAATTC
* * *
14273 TCACGTAAATAAGTTTCTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
62 TCACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACGAAATGACAAACTATTTAGACC
* * *
14338 AAATGATGCGATTTCTCGAGCATGGAATGTTC-AGAAAATGGCTCAAATGAATGGAT-AGTCTTG
127 AAATGATGCGATTTCCCGAGCATGGAATGTTCGA-AAAATTGCTCAAAGGAATGGATCA-TCTTG
* * * *
14401 AATACTTTAAGGAACCAAAGTTGTAAAAGAACTCGTAAACGTTTGACTAG-TCCGTAAGTTCGTC
190 AATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-ATTTGACAAGTTCTG-AAGTTCGTC
* * * * *
14465 CGAGAACCAAGAGAGAAACAATTCTCACATAAATAATTTTTTAATTTAAAGACCAAAATTTGTTT
253 CAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
14530 GCAAAATCACAAACTATTTAGAACAAAAGATGCGATTTC-CGGAGCTTGGAATGTTCAGAAAATG
318 ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTGA-AAAATT
* *
14594 GCTC--A--AA-GGA--A-C--CAA-AGTTATCA-GAACTCGTAAAAGTTAT-
381 GCTCGAAGGAATGGATCATCTTTAATACTT-TCAGGAAC-CG---AAGTTATA
* * * * * *
14634 -CAGAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACCACA-AGAGGAACAATTCT
1 AAAGAACT-GTAAAAGTTTGACAAGTTTG-AAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCT
** * * * * *
14697 CACGTAAATTGGTTTTTAATTTAATGACTAAAAGTTGTTTAC-ATAATGACAAAGTTTTTAGACC
63 CACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACGA-AATGACAAACTATTTAGACC
* * * * * * * * * *
14761 GAATGATACGA-TTCCTGAACATGGAAAGTTCGAAAAATTGGTCGAATGAATGGATCGTCTTGAG
127 AAATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAA
** * * ** * * * *
14825 TACTCTT-AGGAACTTAAGTTACAAAAGAGCTATTAAACGTTCCG-CAAGTGCGGAAGTTCGTCC
192 TACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-ATT-TGACAAGTTCTGAAGTTCGTCC
* * *
14888 AAGAACCATGAGGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCTAAGACCAAAAATTGTTT
254 AAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTT
* * * * * * *
14953 AGAAAATGATAACCTATTTCGACCAAATGATGTC-ATCTCTCGCGCATGGAATGCTTGGAAAATT
318 ACAAAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAATG-TTGAAAAATT
* * * * *
15017 GCACAAAGGAATGGATCACCTTTAATAGTTTAAGGAACCGAAGTTATA
381 GCTCGAAGGAATGGATCATCTTTAATACTTTCAGGAACCGAAGTTATA
* *
15065 AAGGAACTGATAAAAAGTTTGACAAGTTTAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGT
1 AAAGAACTG-T-AAAAGTTTGACAAGTTT-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
* * * *
15130 CATGTAAAT-A-TTTTTAATTCAAAGATGAAAAGTTGATTACGAAATGAAAAACTATTTAGACCA
63 CACGTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACGAAATGACAAACTATTTAGACCA
* * * * *
15193 AACGATGCGATTTCCCAAGCGTAGAATGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAAT
128 AATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAAT
** *
15258 ACTTTAAGGAACTGAAGTTATAAAAGAACTGGTAAATATTTGACAAGTTCTGAAGTTCGTCCAAG
193 ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-ATTTGACAAGTTCTGAAGTTCGTCCAAG
* * * *
15323 AACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGACTGAAAGGTT-TTTACA
257 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC-CAAAAGTTGTTTACA
* *
15387 AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCAC
321 AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG-TTGAAAAATTGCTC
* * * ** *
15452 AAAGGAATGGATCGTCTTTAATACTCTCAAAAACCAAAGTTATA
385 GAAGGAATGGATCATCTTTAATACTTTCAGGAACCGAAGTTATA
15496 A
1 A
15497 TAAAAGAATT
Statistics
Matches: 2772, Mismatches: 539, Indels: 284
0.77 0.15 0.08
Matches are distributed among these distances:
420 1 0.00
421 7 0.00
422 101 0.04
423 205 0.07
424 6 0.00
425 8 0.00
427 4 0.00
428 5 0.00
430 162 0.06
431 591 0.21
432 471 0.17
433 466 0.17
434 82 0.03
435 481 0.17
436 182 0.07
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (428 bp):
AAAGAACTGTAAAAGTTTGACAAGTTTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
GTAAATAAGTTTTTAATTCAAAGACGAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAAT
GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACT
TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAATTTGACAAGTTCTGAAGTTCGTCCAAGAACC
AAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATG
ACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTGAAAAATTGCTCGAAGGA
ATGGATCATCTTTAATACTTTCAGGAACCGAAGTTATA
Found at i:15863 original size:373 final size:372
Alignment explanation
Indices: 15161--15867 Score: 933
Period size: 373 Copynumber: 1.9 Consensus size: 372
15151 AAGATGAAAA
* *
15161 GTTGATTACGAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCGTAGAATGTTCGA
1 GTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCATAGAATGTTCGA
* * * ** *
15226 AAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAACTGGT
66 AAAATGGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
* *
15291 AAATATTTGACAAGTTCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCATGTAAATAAG
131 AAATATTTGACAAGTCCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAG
* * *
15356 TTTTTAATTCAAAGACTGAAAGGTTTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATT
196 TTTTTAATTCAAAGAC-GAAAGATTTTTACAAAATCACAAACTATTTAGACCAAAAGATGCGATT
* ** * * *
15421 TCCCGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCGTCTTTAATACTCTCAAAAAC
260 CCCCGAGCATGGAATGTTCAAAAAATTGCACAAAGGAATGGATAGCCTTGAATACTCTCAAAAAC
15486 CAAAGTTATAATAAAAGAATTTGTAAATTTTTGAAAAGTTCAGCAAAT
325 CAAAGTTATAATAAAAGAATTTGTAAATTTTTGAAAAGTTCAGCAAAT
* * * * * * *
15534 GTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTTGA
1 GTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCATAGAATGTTCGA
* *
15599 AAAATGGCACAAATGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGAACTCG
66 AAAATGGCACAAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCG
* * * *
15663 TAAA-AGTTTGACTAGTCC-GTAAGTTCGTCCGAGAACCAAGAGAGAAATAATTCTCACGTAAAT
130 TAAATA-TTTGACAAGTCCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAAT
* *
15726 AAGTTTTTAATTTAAAGAAC-AAA-ATTTGTCTGCAAAATCACAAACTATTTAGACCAAAAGATG
193 AAGTTTTTAATTCAAAG-ACGAAAGATTT-T-TACAAAATCACAAACTATTTAGACCAAAAGATG
* *
15789 CGA-TCCCCGGAGCATGGAATGTTCAAAAAATTG-ATTAAAGGAATGGATAGCCTTGAATACTTT
255 CGATTCCCC-GAGCATGGAATGTTCAAAAAATTGCA-CAAAGGAATGGATAGCCTTGAATACTCT
* **
15852 GAGGAACCAAAGTTAT
318 CAAAAACCAAAGTTAT
15868 CAAAGAACTC
Statistics
Matches: 287, Mismatches: 39, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
371 3 0.01
372 12 0.04
373 270 0.94
374 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (372 bp):
GTTGATTACAAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCATAGAATGTTCGA
AAAATGGCACAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT
AAATATTTGACAAGTCCTGAAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCACGTAAATAAG
TTTTTAATTCAAAGACGAAAGATTTTTACAAAATCACAAACTATTTAGACCAAAAGATGCGATTC
CCCGAGCATGGAATGTTCAAAAAATTGCACAAAGGAATGGATAGCCTTGAATACTCTCAAAAACC
AAAGTTATAATAAAAGAATTTGTAAATTTTTGAAAAGTTCAGCAAAT
Found at i:16475 original size:215 final size:215
Alignment explanation
Indices: 15529--20390 Score: 4131
Period size: 216 Copynumber: 22.6 Consensus size: 215
15519 AAAAGTTCAG
* * *
15529 CAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * *
15594 TTTGAAAAATGGCACAAATGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGA
66 TTCGAAAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * *
15658 ACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTCCGAGAACCAAGAGAGAAATAATTCTCACGTA
130 ACT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* *
15723 AATAAGTTTTTAATTTAAAGAA
194 AATAAGTTTTTAATTCAAAGAC
* * * * * * *
15745 CAAAATTTGTCTGCAAAATCACAAACTATTTAGACCAAAAGATGCGA-TCCCCGGAGCATGGAAT
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC-GAGCATGGAAT
* * ** * * *
15809 GTTCAAAAAATTGATTAAAGGAATGGAT-AGCCTTGAATACTTTGAGGAACCAAAGTTATCAAAG
65 GTTCGAAAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * * *
15873 AACTCGTAAAAGTTCGACCAGTTCGTAAGTTCATCCTAGAACCACA-AGAGGAACAATTCTCACG
129 AACT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCA-AGAGAGAAACAATTCTCACG
* *
15937 TAAATAGGTTTTTAATTCGAAGAC
192 TAAATAAGTTTTTAATTCAAAGAC
* * * * * *
15961 TAAAAGTTGTTTAC-ATAATGACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAAA
1 CAAAAGTTGTTTACGA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * ** *
16024 GTTCGAAAAATTAG-TCGAAGGAATGGATCGTCTCGATTACTCTCAGGAACTTAAGTTACAAAAG
65 GTTCGAAAAATT-GCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * ** *
16088 AGCTATTAAA-TGTT-CCAAGTAGGAAAGTTCGTCCAAGAACCATGAGAGAAACAATTCTCACGT
129 AACTGTAAAAGT-TTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
16151 AAATAA-TTTTTAATTCAAAGAC
193 AAATAAGTTTTTAATTCAAAGAC
* * * * ** * * *
16173 CAAAAATTGTTTA-GAAAATGATAACCTGTTTAGACCAAATGATGTAATATCTCGGGCATGGAAT
1 CAAAAGTTGTTTACG-AAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * ** *
16237 GCTT-GAAAAATTGCACAAAGGAATGGATCACCTTTAATAGTTTAAGGAACTGAAGTTATAAAGG
65 G-TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * *
16301 AACTGATAAAAAGTTTGACAAGTT-TAGAAGTTCGTCCATGAACCAAGA-AGGAAACAATTGTCA
129 AACTG-T-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGA-GAAACAATTCTCA
* *
16364 TGTAAAT-A-TTTTTAATTCAAAGAT
190 CGTAAATAAGTTTTTAATTCAAAGAC
* * * * * *
16388 GAAAAGTTGATTACGAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCATAGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * ** *
16453 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTGAAGGAACTGAAGTTATAGAAGAA
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
** * * *
16518 CACATAAAAGCTTGACAAGTTCGAAAGTTCAG-CCAAGAACAAAGAGAGAAACAGTTCTCACGTA
131 C-TGTAAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
*
16582 AATAAGTTTTTAATTCAAAGAG
194 AATAAGTTTTTAATTCAAAGAC
* * ** *
16604 CGAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAATGCGATTTTTCGAGCATTGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * *
16669 TTCGAAAAACTGGTC----GAA-GG--C--C-TGAATAATTTAAGGAACCGAAGTTATAAAAGAA
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* *
16724 CTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGTAA
131 CT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
*
16789 ATAAGTTTTCAATTCAAAGAC
195 ATAAGTTTTTAATTCAAAGAC
* * * * *** * *
16810 CAAAAGTTGTTTACAAAATTAAAAAAAC-ATTAAGAATGAATGATGCGATTTCTCGAGCCTGGAA
1 CAAAAGTTGTTTACGAAA-T-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * * * *** * *
16874 TGCTCCACAAATTAG-TCGAAGGAATGGGTCATCTTTAATGCTCCCAGAAACCGAAGTTATAAAA
64 TGTTCGAAAAATT-GCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
*
16938 GAACTGGTAAATA-TTTGACAAGTTCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCA
128 GAACT-GTAAA-AGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
17001 TGTAAATAAGTTTTTAATTCAAAGAC
190 CGTAAATAAGTTTTTAATTCAAAGAC
** * * * *
17027 CGGAAGGT-TTTATCAAAATGACAAACTATTTGGACCGAATGATGCGATTTCCCGAGCATGGAAT
1 CAAAAGTTGTTTA-CGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * * *
17091 GTTTGAAAAATTGCACAAAGGAATGGATCGTCTTTAATACTCTCAA-GAGCCAAAGTTATAATAA
65 GTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAG-T-T-ATAA
* ** * * **
17155 AATAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCCAAGAACCAAGAGAGAAA-ATATTCTC
126 AAGAAC-TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTC
* * * * * *
17219 ATGCAAATAAATTTTAAATTCAAACAT
189 ACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * *
17246 CAAAAGTTGTTTACCATATGACAAACTGTTTTGACCAAAT-ATGCAATTTTCCGAGAATGGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * * * *
17310 TTCGAAAATTTGGTTGAAGGAATGCATCTTCTTAAATACTTTTAGGAATCAAAGTTATAAAAGAA
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
** * * * *** *
17375 CTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCTCATGTAA
131 C-TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAA
* *
17440 ATAAGATTTTAATTCGAAGAC
195 ATAAGTTTTTAATTCAAAGAC
* * * * *
17461 CAAAAATAGTTTACAAAATGACAAACTATTTAGACCAAATGATGC-ATTTTCTCGAGCATGAAAT
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCCCGAGCATGGAAT
* * * * * *
17525 ATACGAAAAATGGCTCAAATGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAG
65 GTTCGAAAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * * *
17589 AACTCGTAAAAGTTTGACTAGTCCGTAAGTTCATTCGAGAACCAAGAGAGAAACAATTCTCACGT
129 AACT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
*
17654 AAATAAGTTTTTTAATAT-AAAAAC
193 AAATAAG-TTTTTAAT-TCAAAGAC
* * * * * *
17678 CAAAA-TATGTTTGCAAAATCACAAACTATTTAGACCAAAAGATGC-AATCCCCGGAGCATGGAA
1 CAAAAGT-TGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCC-GAGCATGGAA
* * * *
17741 TGTTC-AGAAAATGGCT-GAAAGGAATGGAT-AGCCTTGAATACTTTGAGGAACCAAAGTTATCA
64 TGTTCGA-AAAATTGCTCG-AAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAA
** * *
17803 AAGAACTCGTAAAAGTACGACCAA-TTCGTAAGTTCGACCTAA-AACCACA-AGAGAAACAATTC
126 AAGAACT-GTAAAAGTTTGA-CAAGTTCGAAAGTTCGTCC-AAGAACCA-AGAGAGAAACAATTC
* * * *
17865 TCAAGTAAATAGGTTTTTAATTCGAATAC
187 TCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * * *
17894 TAAAAGTTGTTTAC-ATAATGAAAAAGTTTTTGGACCGAATGATACGA-TTCCCGAGCATGGAAA
1 CAAAAGTTGTTTACGA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * ** * * ** *
17957 GTTCAAAAAATCGGTCG-A--ATTGGATTGTCTTGAGTACTCTCAA-GAACTTAAGTTACAAAAG
65 GTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAGTTATAAAAG
* * * * * * * *
18018 AGCTATTAAATGTTTCG-CAAGTACGGAAGTTTGTCCAAGAACCATGAGAGAAATAATTCTCACG
129 AACT-GTAAAAGTTT-GACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
18082 TAAATAAGTTTTTAATTCAAAGAC
192 TAAATAAGTTTTTAATTCAAAGAC
* * * * * *
18106 CAAAAATTGTTTA-GAAAATGATAACCTATTTTGACCAAATGATGTC-ATTTCTCGGGCATGGAA
1 CAAAAGTTGTTTACG-AAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAA
* * * * * * *
18169 TGCTT-GAAAAATTGCACAAAGGAATGGATCACCTTGAATAGTTTAAGGAACCGAAGTTATGAAG
64 TG-TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* *
18233 GAACTGATAAAAAGTTTGACAAGTT-TAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCA
128 GAACTG-T-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
18297 TGTAAAT-A-TTTTTAATTCAAAGAC
190 CGTAAATAAGTTTTTAATTCAAAGAC
* ** * * * * * * *
18321 GAAAAGTTAATTACGAAATGAAAAACTATTTAGACCTAACGATGCGATTTCTCAAGCGTAGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* ** * * * *
18386 TTCAAAAAATTGCTCTTAGGAATAGATCGTCTTGAATACTTTAAGGAACTAAAGTTATATAAGAA
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* ** * * *
18451 CTCATAAAACCTTGACAAGTTCGAAAGTTCAG-CCAGGAACAAAGAGAGAAACAGTTCTCACGTA
131 CT-GTAAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
*
18515 AATAAGTTTTTAATTCAAAGAG
194 AATAAGTTTTTAATTCAAAGAC
* * * * * *
18537 CAAAAGTTGTTTACGAAATTACAAACTATTTAGACCAAATAATGCAATTTTCCAAGCATTGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * ** * *
18602 TTCGAAAAACTGGTCGAA-GAATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAGA
66 TTCGAAAAATTGCTCGAAGGAAT-GGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* *
18666 ACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACGT
130 ACT-GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * *
18730 AAATAAGTTTTCAATTCAAGGGC
193 AAATAAGTTTTTAATTCAAAGAC
* * * *** * *
18753 CAAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGAATGAATGATTCGATTTCCCGAGCCTGGAA
1 CAAAAGTTGTTTACGAAA-T-GACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAA
* * * * * * *
18817 TGCTCGAAAAATTAG-TCGAAGGAATGGGTCATCTTTAATGCTCTT-AGAAACCGAAGTTATAAG
64 TGTTCGAAAAATT-GCTCGAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAGTTATAAA
* *
18880 AGAACTGGTAAATA-TTTGACTAGTTCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTC
127 AGAACT-GTAAA-AGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
*
18943 ATGTAAATAAGTTTTTAATTCAAAGAC
189 ACGTAAATAAGTTTTTAATTCAAAGAC
* * *
18970 CGAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATACGA-TTCCTCGAGCATGGAA
1 C-AAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCC-CGAGCATGGAA
* * * * * *
19033 TGTTTGAAAAATTGCAC-AAAGAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAGTA
64 TGTTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAG-T-TA-TA
** * ** *
19096 AAAGAACTTGTAAATTTTTGAAAAGTTCGAAAGTTAATCCAAGTACCAAGAGAGAAA-ATATTCT
125 AAAGAAC-TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCT
* * * * *
19160 CATGCAAATAAATTTTAAATTCAAACAC
188 CACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * * *
19188 CAAAAGTTGTTTACCATATGACAAACTATTTTGACCAAATGATGCAATTTTCAGAGAATGGAATT
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * * *
19253 TTAGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATAC-TAATAGGAACCAAAGTTATAAAAGA
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTA-AGGAACCAAAGTTATAAAAGA
** * * * ***
19317 ACTTGTAAATTTTTGAAAAGATC-AGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCTCACGT
130 AC-TGTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
19381 AAATAAGTTTTTAATTCAAAGAC
193 AAATAAGTTTTTAATTCAAAGAC
* * *
19404 CAAAAGTTGTTCAC-AGAATGACAAAATATTTAGACCAAATGATGCGATTTCTCGAGCATGGAAT
1 CAAAAGTTGTTTACGA-AATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAAT
* * * * * *
19468 GTTCGGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAGTACTTTAAGGAACCAAAGTCATCAAAG
65 GTTCGAAAAATTGCTCGAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * * *
19532 AACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACC-AGAAGGGGAACAATTCTCACG
129 AACT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAG-AGAGAAACAATTCTCACG
* *
19596 TAAATAGGTTTTTAATTCGAAGAC
192 TAAATAAGTTTTTAATTCAAAGAC
* * ** * * * * * *
19620 TATAAGTTGTTTACTTAATAACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAAAG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * * ** * *
19684 TCCAAAAAATTGGTCGAAGGAATGGATCATCTTGAGTACTCTCAGGAACTTAAGTTACAAAAGAG
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * * * *
19749 CTATTAAATGTTCCG-CAAGTAC-AGAAGTTCGTCCAAGAACCATGAGAGGAATAATTCTCACGT
131 CT-GTAAAAGTT-TGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
19812 AAATAAGTTTTTAATTCAAAGAC
193 AAATAAGTTTTTAATTCAAAGAC
* * * * * *
19835 CAAAAATTGTTTA-GAAAATGATAACCTATTTAAACCAAATGATGTC-ATTTCTCGGGCATGGAA
1 CAAAAGTTGTTTACG-AAATGACAAACTATTTAGACCAAATGATG-CGATTTCCCGAGCATGGAA
* * * * * * * *
19898 TGCTT-GAAAAATTGCACAAAGGAATGTATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAG
64 TG-TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
* * *
19962 GAATTGATAAAAAGTTTGACAAGTT-TAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCA
128 GAACTG-T-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
*
20026 TGTAAAT-A-TTTTTAATTCAAAGAC
190 CGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * **
20050 GAAAAGTTGATTACGAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCGTATAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* **
20115 TTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAAGAA
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
* * * * *
20180 CTCATAAGAGCTTGACAAGTTCGAAAGTTCAG-CCAAGAACAAAGAGAGAAACAGTTCTCACGTA
131 CT-GTAAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * *
20244 AATAAGTTTTTAATACATAGAG
194 AATAAGTTTTTAATTCAAAGAC
* * * **
20266 CAAAAGTTGGTTACGAAATGACAAACTATTTAGACCAAATAATGCTATTTTTCGAGCATGGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
* * * * * *
20331 TTTGAAAAATTGCACAAAGGAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAA
66 TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAGTTATAA
20391 TAAAAGAACT
Statistics
Matches: 3731, Mismatches: 754, Indels: 322
0.78 0.16 0.07
Matches are distributed among these distances:
206 120 0.03
207 41 0.01
208 6 0.00
209 1 0.00
211 10 0.00
212 179 0.05
213 134 0.04
214 171 0.05
215 794 0.21
216 1346 0.36
217 569 0.15
218 220 0.06
219 135 0.04
220 5 0.00
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (215 bp):
CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGAGCATGGAATG
TTCGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
CTGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTAATTCAAAGAC
Found at i:18575 original size:431 final size:430
Alignment explanation
Indices: 15529--20390 Score: 4154
Period size: 431 Copynumber: 11.3 Consensus size: 430
15519 AAAAGTTCAG
* *
15529 CAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
* * * *
15594 TTTGAAAAATGGCACAAATGAATGGAT-AGTCTTGAATACTTTAAGGAACCAAAGTTGTAAAAGA
66 -TTGAAAAATTGCTCAAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
* * * * *
15658 ACTCGTAAAAGTTTGACTAGTCCGTAAGTTCGTCCGAGAACCAAGAGAGAAATAATTCTCACGTA
129 ACT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * * * * * *
15723 AATAAGTTTTTAATTTAAAGAACAAAATTTGTCTGCAAAATCACAAACTATTTAGACCAAAAGAT
193 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
* * * * * *
15788 GCGA-TCCCCGGAGCATGGAATGTTCAAAAAATTGATTAAAGGAATGGATAGCCTTGAATACTTT
258 GCGATTTCCC-GAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTT
* * * * * * *
15852 GAGGAACCAAAGTTATCAAAGAACTCGTAAAAGTTCGACCAGTTCGTAAGTTCATCCTAGAACCA
322 AAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAACCA
* * *
15917 CA-AGAGGAACAATTCTCACGTAAATAGGTTTTTAATTCGAAGAC
387 -AGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * *
15961 TAAAAGTTGTTTAC-ATAATGACAAAGTTTTTAGACCGAATGATACGA-TTCCCGAGCATGGAAA
1 CAAAAGTTGTTTACGA-AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAAT
* * * * * * ** *
16024 GTTCGAAAAATTAG-TCGAAGGAATGGATCGTCTCGATTACTCTCAGGAACTTAAGTTACAAAAG
65 GTT-GAAAAATT-GCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * ** *
16088 AGCTATTAAA-TGTT-CCAAGTAGGAAAGTTCGTCCAAGAACCATGAGAGAAACAATTCTCACGT
128 AACTGTAAAAGT-TTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
* * * * *
16151 AAATAA-TTTTTAATTCAAAGACCAAAAATTGTTTAGAAAATGATAACCTGTTTAGACCAAATGA
192 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGA
** * * * * ** * *
16215 TGTAATATCTCGGGCATGGAATGCTT-GAAAAATTGCACAAAGGAATGGATCACCTTTAATAGTT
257 TGCGATTTCCCGAGCATGGAATG-TTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTT
** * * *
16279 TAAGGAACTGAAGTTATAAAGGAACT-GATAAAAAGTTTGACAAGTT-TAGAAGTTC-GTCCATG
321 TAAGGAACCAAAGTTATAAAAGAACTCG-T-AAAAGTTTGACAAGTTCGA-AAGTTCAG-CCAAG
* * *
16341 AACCAAGA-AGGAAACAATTGTCATGTAAAT-A-TTTTTAATTCAAAGAT
382 AACCAAGAGA-GAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * * *
16388 GAAAAGTTGATTACGAAATGAAAAACTATTTAGACCAAACGATGCGATTTCCCAAGCATAGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
* * * * ** *
16453 TTCGGAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTGAAGGAACTGAAGTTATAGAAGAA
66 TT-GAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAA
** * * *
16518 CACATAAAAGCTTGACAAGTTCGAAAGTTCAG-CCAAGAACAAAGAGAGAAACAGTTCTCACGTA
130 C-TGTAAAAGTTTGACAAGTTCGAAAGTTC-GTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * * *
16582 AATAAGTTTTTAATTCAAAGAGCGAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATAAT
193 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
** * * * *
16647 GCGATTTTTCGAGCATTGAATGTTCGAAAAACTGGTC----GAA-GG--C--C-TGAATAATTTA
258 GCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTA
* * *
16702 AGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCATCCAAAAACCAA
323 AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAACCAA
*
16767 GAGAGAAACAATTCTCACGTAAATAAGTTTTCAATTCAAAGAC
388 GAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * *** *
16810 CAAAAGTTGTTTACAAAATTAAAAAAAC-ATTAAGAATGAATGATGCGATTTCTCGAGCCTGGAA
1 CAAAAGTTGTTTACGAAA-T-GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAA
** * * * * * *** * *
16874 TGCTCCACAAATTAG-TCGAAGGAATGGGTCATCTTTAATGCTCCCAGAAACCGAAGTTATAAAA
64 TG-TTGAAAAATT-GCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAA
*
16938 GAACTGGTAAATA-TTTGACAAGTTCTG-AAGTTCGTCCAAGAACCAAGAGAGAAACAATCCTCA
127 GAACT-GTAAA-AGTTTGACAAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* ** * * * *
17001 TGTAAATAAGTTTTTAATTCAAAGACCGGAAGGT-TTTATCAAAATGACAAACTATTTGGACCGA
189 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA-CAAAATGAAAAACTATTTAGACCAA
* * *
17065 ATGATGCGATTTCCCGAGCATGGAATGTTTGAAAAATTGCACAAAGGAATGGATCGTCTTTAATA
253 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATA
* * * * ** * * * *
17130 CTCTCAA-GAGCCAAAGTTATAATAAAATAACTTGTAAATTTTTGAAAAGTTTGAAAGTTAATCC
318 CT-TTAAGGAACCAAAG-T-T-ATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGCC
* * * * * *
17194 AAGAACCAAGAGAGAAA-ATATTCTCATGCAAATAAATTTTAAATTCAAACAT
379 AAGAACCAAGAGAGAAACA-ATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * * *
17246 CAAAAGTTGTTTACCATATGACAAACTGTTTTGACCAAAT-ATGCAATTT-TCCGAGAATGGAAT
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAAT
* * ** * * * * *
17309 GTTCGAAAATTTGGTTGAAGGAATGCATCTTCTTAAATACTTTTAGGAATCAAAGTTATAAAAGA
65 GTT-GAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGA
** * * * *** *
17374 ACTTGTAAATTTTTGAAAAGTTCGGAAGTTCATCCAAGAACTGGGAGAGAAACAATTCTCATGTA
129 AC-TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTA
* * * * *
17439 AATAAGATTTTAATTCGAAGACCAAAAATAGTTTACAAAATGACAAACTATTTAGACCAAATGAT
193 AATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGAT
* * * * * * *
17504 GC-ATTTTCTCGAGCATGAAATATACGAAAAATGGCTCAAATGAATGGATAGTCTTGAATACTTT
258 GCGA-TTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTT
* * * * ** *
17568 AAGGAACCAAAGTTGTAAAAGAACTCGTAAAAGTTTGACTAGTCCGTAAGTTCATTCGAGAACCA
322 AAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAACCA
*
17633 AGAGAGAAACAATTCTCACGTAAATAAGTTTTTTAATAT-AAAAAC
387 AGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAAT-TCAAAGAC
* * * * * * *
17678 CAAAA-TATGTTTGCAAAATCACAAACTATTTAGACCAAAAGATGC-AATCCCCGGAGCATGGAA
1 CAAAAGT-TGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAA
* * * * * *
17741 TGTTCAGAAAATGGCTGAAAGGAATGGAT-AGCCTTGAATACTTTGAGGAACCAAAGTTATCAAA
64 TGTTGA-AAAATTGCTCAAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAA
** * *
17805 GAACTCGTAAAAGTACGACCAA-TTCGTAAGTTCGACCTAA-AACCACA-AGAGAAACAATTCTC
127 GAACT-GTAAAAGTTTGA-CAAGTTCGAAAGTTCGTCC-AAGAACCA-AGAGAGAAACAATTCTC
* * * * * * * * * *
17867 AAGTAAATAGGTTTTTAATTCGAATACTAAAAGTTGTTTACATAATGAAAAAGTTTTTGGACCGA
188 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * * * * * *
17932 ATGATACGA-TTCCCGAGCATGGAAAGTTCAAAAAATCGGTC----GAATTGGATTGTCTTGAGT
253 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAA-TGGATCGTCTTGAAT
* ** * * ** * * * *
17992 ACTCTCAA-GAACTTAAGTTACAAAAGAGCTATTAAATGTTTCG-CAAGTACGGAAGTT-TGTCC
317 ACT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTT-GACAAGTTCGAAAGTTCAG-CC
* *
18054 AAGAACCATGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
379 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * *
18106 CAAAAATTGTTTA-GAAAATGATAACCTATTTTGACCAAATGATGTC-ATTTCTCGGGCATGGAA
1 CAAAAGTTGTTTACG-AAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAA
* * * * * *
18169 TGCTTGAAAAATTGCACAAAGGAATGGATCACCTTGAATAGTTTAAGGAACCGAAGTTATGAAGG
64 TG-TTGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * *
18234 AACTGATAAAAAGTTTGACAAGTT-TAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCAT
128 AACTG-T-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* ** * * *
18298 GTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTAATTACGAAATGAAAAACTATTTAGACCTAAC
190 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAAT
* * * * * ** *
18361 GATGCGATTTCTCAAGCGTAGAATGTTCAAAAAATTGCTCTTAGGAATAGATCGTCTTGAATACT
255 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT
* * * ** *
18426 TTAAGGAACTAAAGTTATATAAGAACTCATAAAACCTTGACAAGTTCGAAAGTTCAGCCAGGAAC
320 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAAC
* * *
18491 AAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATTCAAAGAG
385 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * *
18537 CAAAAGTTGTTTACGAAATTACAAACTATTTAGACCAAATAATGCAATTT-TCCAAGCATTGAAT
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAAT
* * * ** * *
18601 GTTCGAAAAACTGGTCGAA-GAATAGGATCGGCTTGAATAATTTAAGGAACCGAAGTTATAAAAG
65 GTT-GAAAAATTGCTCAAAGGAAT-GGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* *
18665 AACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCATCCAAAAACCAAGAGAGAAACAATTCTCACG
128 AACT-GTAAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACG
* * * * ***
18729 TAAATAAGTTTTCAATTCAAGGGCCAAAAGTTGTTTACAAAATTAAAAAAAC-ATTTAGAATGAA
191 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAA-T-GAAAAACTATTTAGACCAAA
* * * * * * * *
18793 TGATTCGATTTCCCGAGCCTGGAATGCTCGAAAAATTAG-TCGAAGGAATGGGTCATCTTTAATG
254 TGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATT-GCTCAAAGGAATGGATCGTCTTGAATA
* * * * *
18857 CTCTT-AGAAACCGAAGTTATAAGAGAACTGGTAAATA-TTTGACTAGTTCTG-AAGTTC-GTCC
318 CT-TTAAGGAACCAAAGTTATAAAAGAACTCGTAAA-AGTTTGACAAGTTC-GAAAGTTCAG-CC
* *
18918 AAGAACCAAGAGAGAAACAATCCTCATGTAAATAAGTTTTTAATTCAAAGAC
379 AAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * *
18970 CGAAAGGTT-TTTACAAAATGACAAACTATTTAGACCAAATGATACGATTCCTCGAGCATGGAAT
1 C-AAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAAT
* * * *
19034 GTTTGAAAAATTGCACAAA-GAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAGTAA
65 G-TTGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAG-T-TA-TAA
** * ** *
19097 AAGAACTTGTAAATTTTTGAAAAGTTCGAAAGTTAATCCAAGTACCAAGAGAGAAA-ATATTCTC
125 AAGAAC-TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA-ATTCTC
* * * * * * * * *
19161 ATGCAAATAAATTTTAAATTCAAACACCAAAAGTTGTTTACCATATGACAAACTATTTTGACCAA
188 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAA
* * * * * * * ** * * *
19226 ATGATGCAATTTTCAGAGAATGGAATTTTAGAAAAATTGGTTGAAGGAATGCATCTTCTTAAATA
253 ATGATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATA
* * ** * * *
19291 C-TAATAGGAACCAAAGTTATAAAAGAACTTGTAAATTTTTGAAAAGATC-AGAAGTTCATCCAA
318 CTTTA-AGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGA-AAGTTCAGCCAA
***
19354 GAACTGGGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
381 GAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* *
19404 CAAAAGTTGTTCAC-AGAATGACAAAATATTTAGACCAAATGATGCGATTTCTCGAGCATGGAAT
1 CAAAAGTTGTTTACGA-AATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAAT
* * * * *
19468 GTTCGGAAAATGGCTCAAAGGAATGGAT-AGTCTTGAGTACTTTAAGGAACCAAAGTCATCAAAG
65 GTT-GAAAAATTGCTCAAAGGAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * * * *
19532 AACTCGTAAAAGTTCGACCAGTTCGTAAGTTCGTCCTAGAACC-AGAAGGGGAACAATTCTCACG
128 AACT-GTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAG-AGAGAAACAATTCTCACG
* * * * ** * * *
19596 TAAATAGGTTTTTAATTCGAAGACTATAAGTTGTTTACTTAAT-AACAAAGTTTTTAGACCGAAT
191 TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAA-AAACTATTTAGACCAAAT
* * * * * * * *
19660 GATACGA-TTCCCGAGCATGGAAAGTCCAAAAAATTGGTCGAAGGAATGGATCATCTTGAGTACT
255 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT
* * ** * * ** * * *
19724 CTCAGGAACTTAAGTTACAAAAGAGCTATTAAATGTTCCG-CAAGTAC-AGAAGTTC-GTCCAAG
320 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTT-TGACAAGTTCGA-AAGTTCAG-CCAAG
* * *
19786 AACCATGAGAGGAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
382 AACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * * *
19835 CAAAAATTGTTTA-GAAAATGATAACCTATTTAAACCAAATGATGTC-ATTTCTCGGGCATGGAA
1 CAAAAGTTGTTTACG-AAATGACAAACTATTTAGACCAAATGATG-CGATTTCTCGAGCATGGAA
* * * * * * *
19898 TGCTTGAAAAATTGCACAAAGGAATGTATCACCTTTAATAGTTTAAGGAACCGAAGTTATAAAGG
64 TG-TTGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAG
* * * *
19963 AATTGATAAAAAGTTTGACAAGTT-TAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTGTCAT
128 AACTG-T-AAAAGTTTGACAAGTTCGA-AAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
20027 GTAAAT-A-TTTTTAATTCAAAGACGAAAAGTTGATTACGAAATGAAAAACTATTTAGACCAAAC
190 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAAT
* * ** *
20090 GATGCGATTTCCCAAGCGTATAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACT
255 GATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACT
** * * *
20155 TTAAGGAACTGAAGTTATAAAAGAACTCATAAGAGCTTGACAAGTTCGAAAGTTCAGCCAAGAAC
320 TTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAAC
* * * * *
20220 AAAGAGAGAAACAGTTCTCACGTAAATAAGTTTTTAATACATAGAG
385 CAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
* * * *
20266 CAAAAGTTGGTTACGAAATGACAAACTATTTAGACCAAATAATGCTATTTTTCGAGCATGGAATG
1 CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
* * * *
20331 TTTGAAAAATTGCACAAAGGAATGGATCGTCTTTAATACTCTCAA-GAACCAAAGTTATAA
66 -TTGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACT-TTAAGGAACCAAAGTTATAA
20391 TAAAAGAACT
Statistics
Matches: 3544, Mismatches: 722, Indels: 329
0.77 0.16 0.07
Matches are distributed among these distances:
420 51 0.01
421 35 0.01
422 36 0.01
423 210 0.06
424 11 0.00
426 2 0.00
427 111 0.03
428 331 0.09
429 246 0.07
430 183 0.05
431 876 0.25
432 332 0.09
433 415 0.12
434 476 0.13
435 132 0.04
436 97 0.03
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (430 bp):
CAAAAGTTGTTTACGAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATG
TTGAAAAATTGCTCAAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAAC
TGTAAAAGTTTGACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAAT
AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTATTTAGACCAAATGATGCG
ATTTCCCGAGCATGGAATGTTCGAAAAATTGCTCAAAGGAATGGATCGTCTTGAATACTTTAAGG
AACCAAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCAGCCAAGAACCAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGAC
Done.