genome.fa.s14714.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014714.1 Kokia drynarioides strain JFW-HI SEQ_129753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142710

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197--1323	27	4.6	27	78	5	101	48	7	19	24	1.73
1197--1323	55	2.3	57	82	5	152	48	7	19	24	1.73
1197--1325	28	4.6	27	79	5	123	48	6	19	24	1.73
1332--1408	27	2.9	26	84	9	102	54	1	15	28	1.49
1805--1885	28	2.9	28	81	7	101	27	27	16	29	1.97
5417--5492	29	2.6	29	79	8	82	43	13	10	32	1.78
6994--7043	21	2.4	21	75	0	55	36	24	8	32	1.84
12089--12161	36	2.0	36	97	0	137	30	6	27	35	1.83
12765--12873	54	2.0	54	94	0	191	18	24	17	39	1.92
13581--13632	17	3.0	17	80	5	59	19	13	21	46	1.84
16514--16772	120	2.2	120	86	0	365	28	27	15	28	1.96
25216--25357	56	2.5	58	78	12	154	41	1	2	54	1.24
25216--25376	58	2.9	56	75	13	152	42	1	2	53	1.25
27355--27428	30	2.4	31	88	2	114	52	1	1	44	1.17
28025--28059	3	11.7	3	100	0	70	68	0	0	31	0.90
28259--28307	20	2.4	21	86	3	64	42	2	0	55	1.11
37729--37761	10	3.4	10	87	8	50	18	6	0	75	1.00
38780--39084	30	10.4	30	80	7	268	38	1	22	37	1.64
38744--39084	29	11.7	29	78	12	229	37	1	23	37	1.64
38744--39084	59	5.8	59	78	6	302	37	1	23	37	1.64
46285--46508	30	7.6	29	77	10	152	37	2	21	38	1.68
46297--46508	59	3.6	60	76	12	188	37	2	21	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48319--48564	123	2.0	123	95	1	440	24	16	30	28	1.97
48559--49012	39	11.7	38	67	15	110	26	20	29	23	1.99
48461--49346	155	5.7	156	78	6	640	25	19	29	25	1.98
48479--49346	233	3.7	229	80	4	819	25	19	29	24	1.98
48690--49624	39	24.0	39	67	7	333	25	18	30	25	1.98
48537--49350	78	10.5	78	81	3	800	25	19	29	24	1.98
50405--50595	106	1.8	106	81	2	240	38	10	21	29	1.87
57799--58096	29	10.1	30	77	10	213	37	1	23	37	1.64
57755--58068	88	3.6	89	76	11	263	38	1	23	35	1.66
57799--58068	59	4.6	59	81	5	278	38	1	22	37	1.62
57800--58111	59	5.3	59	78	7	260	37	1	23	37	1.66
59047--59090	23	2.0	23	86	4	63	6	2	11	79	1.01
62491--62530	13	3.1	13	89	10	64	67	0	0	32	0.91
74680--74720	18	2.2	20	86	8	59	29	0	19	51	1.47
77257--77308	25	2.0	26	85	10	72	36	5	0	57	1.23
77291--77406	55	2.1	55	78	9	121	38	12	0	47	1.48
80159--80213	27	2.0	27	100	0	110	29	10	29	30	1.91
82877--82926	22	2.3	22	96	0	91	46	12	24	18	1.82
89705--89765	32	1.9	32	83	3	79	52	13	9	24	1.70
114314--114343	12	2.5	12	94	0	51	76	3	0	20	0.92
114727--114751	11	2.3	11	100	0	50	24	0	0	76	0.80
114818--114878	20	3.2	19	73	17	63	40	1	0	57	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123515--123604	30	3.0	30	86	1	137	26	17	28	26	1.98
138252--138291	14	2.7	15	85	14	57	82	0	15	2	0.77

Tables:   1

The End!