Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014715.1 Kokia drynarioides strain JFW-HI SEQ_129754, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3954
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:2652 original size:21 final size:21

Alignment explanation


    Indices: 2626--2668  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2616 TAGGGTCCAT

                         *       
       2626 TTGCCCCGGAGGAGTAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

                  *              
       2647 TTGCCCGGGAGGAATAGAGTA
          1 TTGCCCCGGAGGAATAGAGTA

             
       2668 T
          1 T

       2669 CGCAATGGCT


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.26, C:0.16, G:0.37, T:0.21


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTA

Found at i:2793 original size:45 final size:45

Alignment explanation


    Indices: 2674--2799  Score: 189
    Period size: 45  Copynumber: 2.8  Consensus size: 45

       2664 AGTATCGCAA

                          *  *           **              
       2674 TGGCTCGTCAAACTCAGCCTGATATCCTTCCCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGG

                        *                                
       2719 TGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGTATTGCGG
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGG

                  *           *                 
       2764 TGGCTCATCAAACTGAGGTTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGA

       2800 TGAGCTATGC


Statistics
Matches: 73,  Mismatches: 8, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  45   73  1.00

ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33


Consensus pattern (45 bp):   
TGGCTCGTCAAACTGAGGCTGATATCCTTGGCTTGAGTATTGCGG
Done.