genome.fa.s14717.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014717.1 Kokia drynarioides strain JFW-HI SEQ_129756, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79542

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883--1305	29	14.5	28	74	16	351	36	29	1	31	1.68
882--1290	59	7.0	57	81	10	263	36	29	1	32	1.68
942--1305	88	4.1	87	78	11	402	37	29	1	31	1.67
1027--1334	116	2.6	118	87	3	428	36	30	1	31	1.69
1027--1350	58	5.6	58	82	5	327	35	31	2	30	1.70
969--1349	116	3.3	113	81	8	401	35	31	2	30	1.70
883--1344	88	5.3	87	77	12	349	36	30	1	31	1.69
2517--2592	31	2.5	31	88	0	125	42	15	6	35	1.73
3069--3105	17	2.2	17	90	4	58	67	0	0	32	0.91
3994--4018	13	1.9	13	100	0	50	64	0	0	36	0.94
4924--4985	29	2.1	29	88	5	90	33	25	3	37	1.72
4939--5044	29	3.6	29	74	8	88	34	25	1	37	1.67
4997--5095	29	3.5	28	78	12	112	35	28	0	36	1.58
4997--5366	58	6.3	58	76	9	276	34	26	2	36	1.71
5122--5221	29	3.5	28	72	10	85	40	25	1	34	1.62
5226--5388	58	2.8	56	83	7	184	30	26	5	37	1.79
12275--12432	51	3.2	49	77	9	158	37	20	26	14	1.92
12275--12459	100	1.9	100	80	6	223	40	18	26	14	1.90
12335--12580	50	4.9	49	75	7	199	38	18	27	15	1.91
12293--12580	150	1.9	151	84	2	391	37	18	27	15	1.92
12666--12860	101	1.9	101	83	2	248	34	14	18	32	1.92
12916--13148	39	6.0	39	70	5	159	24	30	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12928--13125	77	2.6	78	85	0	245	24	29	21	25	1.99
13166--14005	194	4.3	193	86	4	1072	35	18	23	23	1.96
14511--14551	16	2.6	16	81	14	50	48	24	4	21	1.69
14969--15023	19	3.0	19	76	15	62	65	3	0	30	1.10
14964--15015	16	3.2	16	73	13	52	61	1	0	36	1.07
14969--15018	26	1.9	26	88	8	75	66	2	0	32	1.03
16099--16206	30	3.5	30	80	7	94	36	25	3	34	1.74
16201--16642	59	7.7	56	81	9	444	32	25	2	39	1.68
16099--16504	29	13.8	29	70	13	170	33	26	2	38	1.69
16117--16642	230	2.2	234	82	8	633	32	25	2	39	1.69
17852--17955	54	1.9	54	96	0	190	15	31	15	37	1.89
20070--20131	20	3.0	20	72	23	58	46	1	11	40	1.49
20070--20136	22	3.2	20	72	20	57	49	1	10	38	1.46
24855--24928	37	2.0	38	89	2	114	25	14	16	43	1.86
26214--26259	7	6.0	7	81	18	56	41	0	0	58	0.98
26214--26259	15	3.0	14	87	12	56	41	0	0	58	0.98
26194--26313	61	2.0	60	81	10	140	35	0	1	61	1.12
30007--30070	30	2.2	30	85	2	85	37	10	9	42	1.73
33442--33634	30	6.6	29	74	10	108	42	3	24	30	1.70
33316--33604	58	5.0	59	79	8	272	37	3	27	31	1.72
33320--33599	59	4.8	58	76	9	223	37	2	27	31	1.72
33496--33687	30	6.6	28	71	14	115	42	3	22	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33558--33687	58	2.2	59	79	4	147	46	3	18	32	1.65
33587--33697	58	1.9	59	90	1	179	44	3	19	32	1.68
33442--33693	29	8.6	29	68	10	131	42	3	23	30	1.70
34815--34875	13	4.8	13	75	2	52	36	6	1	55	1.36
35596--35658	17	3.7	17	86	0	99	55	3	3	38	1.32
36070--36549	97	4.9	98	77	5	481	16	24	20	38	1.93
36134--36557	49	8.7	48	76	6	338	16	26	20	37	1.93
36986--37020	18	1.9	18	94	0	61	57	11	11	20	1.64
47734--47927	97	2.0	97	84	6	250	40	15	15	27	1.88
48160--48381	30	7.6	28	70	17	132	34	3	25	36	1.74
48163--48381	59	3.7	58	81	6	230	35	3	24	36	1.73
48222--48374	29	5.2	29	72	20	113	35	1	25	37	1.67
48340--48469	29	4.4	29	75	7	102	46	2	20	30	1.63
48390--48503	30	3.8	30	74	6	88	44	1	22	30	1.63
50431--50477	23	2.0	23	84	8	60	51	2	6	40	1.39
50400--50470	17	4.2	17	83	5	99	53	2	2	40	1.30
50996--51068	31	2.4	30	75	8	76	42	9	8	39	1.67
50996--51080	31	2.8	29	74	11	73	42	9	8	40	1.67
52399--52451	18	3.1	18	89	7	76	33	0	7	58	1.26
52409--52501	17	5.4	17	79	3	96	41	2	4	51	1.33
52409--52501	35	2.7	35	78	6	91	41	2	4	51	1.33
53170--53242	3	24.0	3	78	8	76	58	0	2	38	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54256--54541	29	9.7	29	76	8	247	34	29	2	33	1.71
54256--54506	59	4.3	59	83	4	285	34	29	2	33	1.71
59716--59746	16	1.9	16	93	0	53	67	0	12	19	1.22
63128--63560	83	5.0	84	76	11	362	30	7	19	42	1.79
65872--66058	96	1.9	96	80	8	211	35	12	20	31	1.90
66349--66762	30	14.0	30	73	17	289	28	4	35	31	1.78
66344--66755	60	7.0	56	85	8	350	29	4	34	31	1.78
66528--66782	60	4.3	60	90	1	370	28	5	34	31	1.79
66363--66760	117	3.4	118	83	9	390	28	5	34	31	1.79
66348--66760	29	14.0	29	75	15	350	28	4	35	31	1.78
67975--68013	7	5.9	7	82	11	55	43	0	0	56	0.99
67975--68020	15	3.1	15	81	6	58	43	0	0	56	0.99
68758--68872	17	6.5	18	81	7	146	53	1	0	43	1.16
68752--68826	24	3.0	24	75	14	73	52	1	1	45	1.17
68758--68872	35	3.3	35	90	1	158	53	1	0	43	1.16
68758--68840	6	14.0	6	72	16	66	53	1	1	44	1.16
69224--69960	209	3.5	209	95	0	1285	21	21	23	33	1.97
70453--70513	27	2.2	27	88	2	86	54	8	18	19	1.68

Tables:   1

The End!