Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014718.1 Kokia drynarioides strain JFW-HI SEQ_129757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80482
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Warning! 7 characters in sequence are not A, C, G, or T
Found at i:491 original size:41 final size:41
Alignment explanation
Indices: 381--483 Score: 179
Period size: 41 Copynumber: 2.5 Consensus size: 41
371 ACTCGATATT
*
381 TTAATGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
1 TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
* *
422 TTAAAGGAAGACTCATGTCTTGGGATGAGAATGAGATTATA
1 TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
463 TTAAAGGAAGACTCATGTCTC
1 TTAAAGGAAGACTCATGTCTC
484 AAAATGAGTG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (41 bp):
TTAAAGGAAGACTCATGTCTCGGGATGAGAATGAGATCATA
Found at i:13107 original size:21 final size:22
Alignment explanation
Indices: 13061--13109 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
13051 TTTAATATAA
13061 AATATTAAATAAAAGGAAATTT
1 AATATTAAATAAAAGGAAATTT
*
13083 AATATTAAA-AACATGGAAA-TT
1 AATATTAAATAA-AAGGAAATTT
13104 AATATT
1 AATATT
13110 CTTTTGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.57, C:0.02, G:0.08, T:0.33
Consensus pattern (22 bp):
AATATTAAATAAAAGGAAATTT
Found at i:13322 original size:122 final size:122
Alignment explanation
Indices: 12963--13561 Score: 835
Period size: 122 Copynumber: 5.0 Consensus size: 122
12953 GATTTCGTTA
* * *
12963 AATATTAAAAA-ATGGATATTAATATCCTTTTGGAAAGGATATAATATTTTAATAGCTTTCCATA
1 AATATTAAAAACATGGAAATTAATATCCTTTTGGAAAGGATATAATGTTTTAATAACTTTCCATA
* * *
13027 TATTTCTCTAAAGGAAT-ATTCCATTTTAATATAAAATATTAAATAAAAGGAAATTT
66 TATTTCTCTAAAGGAATAATTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
* * *
13083 AATATTAAAAACATGGAAATTAATATTCTTTTGGAAATGATATAATGTTTCAATAACTTTCC--A
1 AATATTAAAAACATGGAAATTAATATCCTTTTGGAAAGGATATAATGTTTTAATAACTTTCCATA
*
13146 TATTTCTCTAAAAGAATAATTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
66 TATTTCTCTAAAGGAATAATTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
* * *
13203 AATATTAAAAACAT-GAAAGTTAATATCGTTTTAGAAAGGATATAATGTTTTAATAACTTTTCAT
1 AATATTAAAAACATGGAAA-TTAATATCCTTTTGGAAAGGATATAATGTTTTAATAACTTTCCAT
* * * * *
13267 ACATTTCTCTAAAGAAATAATTCCATTTTAATATGAAATATTAAATAAAATGAAATTA
65 ATATTTCTCTAAAGGAATAATTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
* * *
13325 AATATTAAAAACATAGAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCAT
1 AATATTAAAAACATGGAAATTAATATCCTTTTGGAAAGGATATAATGTTTTAAT-AACTTTCCAT
* *
13390 ATATTTCTCTAAAGGAATATTTCTATTTTAATATGAGATA-T---T-AAAGGAAATTG
65 ATATTTCTCTAAAGGAATAATTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
* *
13443 AATATTAAAAACATGGAAATTAATATCCTTTTGAAAAGGATATAATGTTTTAATAAATCTTCCAT
1 AATATTAAAAACATGGAAATTAATATCCTTTTGGAAAGGATATAATGTTTTAATAACT-TTCCAT
* *
13508 ATATTTCTCTAAAGGAAT-ATT-TAGTTTTAATATGAGTTATTAAATAAAAGGAAA
65 ATATTTCTCTAAAGGAATAATTCCA-TTTTAATATGAGATATTAAATAAAAGGAAA
13562 GATAGCAAAA
Statistics
Matches: 424, Mismatches: 41, Indels: 26
0.86 0.08 0.05
Matches are distributed among these distances:
116 2 0.00
117 18 0.04
118 85 0.20
119 22 0.05
120 98 0.23
121 45 0.11
122 108 0.25
123 46 0.11
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (122 bp):
AATATTAAAAACATGGAAATTAATATCCTTTTGGAAAGGATATAATGTTTTAATAACTTTCCATA
TATTTCTCTAAAGGAATAATTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
Found at i:13542 original size:240 final size:239
Alignment explanation
Indices: 12963--13561 Score: 843
Period size: 240 Copynumber: 2.5 Consensus size: 239
12953 GATTTCGTTA
* * * *
12963 AATATTAAAAA-ATGGATATTAATATCCTTTTGGAAAGGATATAATATTTTAATAGCTTTCCATA
1 AATATTAAAAACATGGAAATTAATATCCTTTTGAAAAGGATATAATGTTTTAATAACTTTCCATA
* *
13027 TATTTCTCTAAAGGAATATTCCATTTTAATATAAAATATTAAATAAAAGGAAATTTAATATTAAA
66 TATTTCTCTAAAGGAATATTCCATTTTAATATGAAATATTAAATAAAAGGAAATTAAATATTAAA
* * * *
13092 AACATGGAAATTAATATTCTTTTGGAAATGATATAATGTTTCAATAACTTTCCATATTTCTCTAA
131 AACATAGAAATTAATATCCTTTTGGAAAGGATATAATGTTTCAATAACCTTCCATATTTCTCTAA
13157 AAGAATAATTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
196 AAGAATAATTCCATTTTAATATGAGATATT--ATAAAAGGAAATTG
* *
13203 AATATTAAAAACAT-GAAAGTTAATATCGTTTT-AGAAAGGATATAATGTTTTAATAACTTTTCA
1 AATATTAAAAACATGGAAA-TTAATATCCTTTTGA-AAAGGATATAATGTTTTAATAACTTTCCA
* * *
13266 TACATTTCTCTAAAGAAATAATTCCATTTTAATATGAAATATTAAATAAAATGAAATTAAATATT
64 TATATTTCTCTAAAGGAAT-ATTCCATTTTAATATGAAATATTAAATAAAAGGAAATTAAATATT
* *
13331 AAAAACATAGAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAAACCTTCCATATATTT
128 AAAAACATAGAAATTAATATCCTTTTGGAAAGGATATAATGTTTCAAT-AACCTTCC--ATATTT
* * *
13396 CTCTAAAGGAATATTTCTATTTTAATATGAGATA-T-T-AAAGGAAATTG
190 CTCTAAAAGAATAATTCCATTTTAATATGAGATATTATAAAAGGAAATTG
*
13443 AATATTAAAAACATGGAAATTAATATCCTTTTGAAAAGGATATAATGTTTTAATAAATCTTCCAT
1 AATATTAAAAACATGGAAATTAATATCCTTTTGAAAAGGATATAATGTTTTAATAACT-TTCCAT
* **
13508 ATATTTCTCTAAAGGAATATT-TAGTTTTAATATGAGTTATTAAATAAAAGGAAA
65 ATATTTCTCTAAAGGAATATTCCA-TTTTAATATGAAATATTAAATAAAAGGAAA
13562 GATAGCAAAA
Statistics
Matches: 319, Mismatches: 29, Indels: 22
0.86 0.08 0.06
Matches are distributed among these distances:
239 1 0.00
240 104 0.33
241 84 0.26
242 85 0.27
243 7 0.02
244 1 0.00
245 37 0.12
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (239 bp):
AATATTAAAAACATGGAAATTAATATCCTTTTGAAAAGGATATAATGTTTTAATAACTTTCCATA
TATTTCTCTAAAGGAATATTCCATTTTAATATGAAATATTAAATAAAAGGAAATTAAATATTAAA
AACATAGAAATTAATATCCTTTTGGAAAGGATATAATGTTTCAATAACCTTCCATATTTCTCTAA
AAGAATAATTCCATTTTAATATGAGATATTATAAAAGGAAATTG
Found at i:14827 original size:66 final size:66
Alignment explanation
Indices: 14750--14883 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
14740 TAAAGCAAAG
14750 TACTAGTATATATCTTGGTTAAACGCGAAGAATAAGCAAGTGATATTCGTTGGTTAAAACATTGG
1 TACTAGTATATATCTTGGTTAAACGCGAAGAATAAGCAAGTGATATTCGTTGGTTAAAACATTGG
14815 T
66 T
*
14816 TACTAGTATATATCTTGGTTAGACGCGAAGAATAAGCAAGTGATATTCGTTGGTTAAAACATTGG
1 TACTAGTATATATCTTGGTTAAACGCGAAGAATAAGCAAGTGATATTCGTTGGTTAAAACATTGG
14881 T
66 T
14882 TA
1 TA
14884 GTGACTTAAC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (66 bp):
TACTAGTATATATCTTGGTTAAACGCGAAGAATAAGCAAGTGATATTCGTTGGTTAAAACATTGG
T
Found at i:18393 original size:123 final size:122
Alignment explanation
Indices: 18025--18510 Score: 744
Period size: 123 Copynumber: 4.0 Consensus size: 122
18015 GTTTTCGTTA
* * *
18025 AATATT-AAAACAT-GAATATTAATATCCTTTTGGAAAAGATATAATGTTTTAATAACTTTCCAT
1 AATATTAAAAACATGGAA-GTTAATATCCTTTTGGAAATGATATAATGTTTTAATAACCTTCCAT
* *
18088 ATATTTCTCTAAAGGAATAATTT-CATTTTAGTATGAGATATTAAATAAAAGGAAATTA
65 ATATTTCTCTAAAGGAAT-ATTTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
* * *
18146 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAAGGATATAATGTTTTAATAACTTTTCATA
1 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAATGATATAATGTTTTAATAACCTTCCATA
* *
18211 TATTTCTCTAAAGGAATAGTTCCATTTTAATATGAGATATTAAACAAAAGGAAATTG
66 TATTTCTCTAAAGGAATATTTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
* *
18268 AATATTAAAAACATAGAAGTTAATATTCTTTTGGAAATGATATAATGTTTTAATGAACCTTCCAT
1 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAATGATATAATGTTTTAAT-AACCTTCCAT
* * *
18333 TTATTTCTCTAAAGGAATATTTCTATCTTAATATGAGATATTAAATAAAAGGAAATTG
65 ATATTTCTCTAAAGGAATATTTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
*
18391 AATATTAAAAACATGGAAGTTAATATCCTTTTGAAAATGATATAATGTTTTAATAAACCTTCCAT
1 AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAATGATATAATGTTTTAAT-AACCTTCCAT
* * *
18456 ATATCTATCTAAAGGAATATTTCCATTTTATTATGAGATATTAAATAAAAGGAAA
65 ATATTTCTCTAAAGGAATATTTCCATTTTAATATGAGATATTAAATAAAAGGAAA
18511 GATAGCAGAA
Statistics
Matches: 334, Mismatches: 27, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
121 9 0.03
122 151 0.45
123 174 0.52
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (122 bp):
AATATTAAAAACATGGAAGTTAATATCCTTTTGGAAATGATATAATGTTTTAATAACCTTCCATA
TATTTCTCTAAAGGAATATTTCCATTTTAATATGAGATATTAAATAAAAGGAAATTG
Found at i:18408 original size:22 final size:21
Alignment explanation
Indices: 18370--18416 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
18360 TTAATATGAG
18370 ATATTAAATAAAAGGAAATTGA
1 ATATTAAATAAAAGGAAATT-A
* *
18392 ATATTAAA-AACATGGAAGTTA
1 ATATTAAATAA-AAGGAAATTA
18413 ATAT
1 ATAT
18417 CCTTTTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.55, C:0.02, G:0.13, T:0.30
Consensus pattern (21 bp):
ATATTAAATAAAAGGAAATTA
Found at i:19909 original size:33 final size:31
Alignment explanation
Indices: 19871--19936 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
19861 GATACTCAGA
19871 AAAAGAAAAAGAAAAAAAAGAGCAT-ATGTACTC
1 AAAAGAAAAAG--AAAAAAGAGCATGA-GTACTC
* *
19904 AAAAGAAACAGAGAAAAGAGCATGAGTACTC
1 AAAAGAAAAAGAAAAAAGAGCATGAGTACTC
19935 AA
1 AA
19937 GTTTGAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 19 0.63
32 1 0.03
33 10 0.33
ACGTcount: A:0.61, C:0.11, G:0.18, T:0.11
Consensus pattern (31 bp):
AAAAGAAAAAGAAAAAAGAGCATGAGTACTC
Found at i:22446 original size:21 final size:21
Alignment explanation
Indices: 22422--22487 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
22412 GTTCAAGAAT
22422 AGTGCAAACTTCTACC-ATACA
1 AGTG-AAACTTCTACCAATACA
*
22443 AGTGACAA-TCCTACCAATACA
1 AGTGA-AACTTCTACCAATACA
**
22464 AGTGACTCTTCTACCAATACA
1 AGTGAAACTTCTACCAATACA
22485 AGT
1 AGT
22488 CTTACTTCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 7 0.18
21 31 0.82
ACGTcount: A:0.38, C:0.27, G:0.11, T:0.24
Consensus pattern (21 bp):
AGTGAAACTTCTACCAATACA
Found at i:24272 original size:2 final size:2
Alignment explanation
Indices: 24265--24296 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
24255 TCTTTTAATT
24265 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24297 CCAATGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36216 original size:19 final size:19
Alignment explanation
Indices: 36163--36217 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
36153 TTTAAATGTG
*
36163 TATTTTTACAAATTCTT-AA
1 TATTTTTACATATT-TTAAA
* *
36182 TATTTTGTGC-TTTTTTAAA
1 TATTTT-TACATATTTTAAA
36201 TATTTTTACATATTTTA
1 TATTTTTACATATTTTA
36218 TTTTTTTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
18 4 0.14
19 22 0.79
20 2 0.07
ACGTcount: A:0.29, C:0.07, G:0.04, T:0.60
Consensus pattern (19 bp):
TATTTTTACATATTTTAAA
Found at i:44733 original size:18 final size:19
Alignment explanation
Indices: 44702--44738 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
44692 AAATATTTTT
*
44702 TATTTTTTTATTTTTCTCG
1 TATTTTCTTATTTTTCTCG
44721 TATTTTCTT-TTTTTCTCG
1 TATTTTCTTATTTTTCTCG
44739 ACTTTTTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.08, C:0.14, G:0.05, T:0.73
Consensus pattern (19 bp):
TATTTTCTTATTTTTCTCG
Found at i:50736 original size:22 final size:22
Alignment explanation
Indices: 50711--50752 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
50701 CTTAGTTAAT
50711 TTCCTAAAAGTCTTATGTTTGA
1 TTCCTAAAAGTCTTATGTTTGA
* * *
50733 TTCCTCACATTCTTATGTTT
1 TTCCTAAAAGTCTTATGTTT
50753 TTTCTTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (22 bp):
TTCCTAAAAGTCTTATGTTTGA
Found at i:52219 original size:19 final size:19
Alignment explanation
Indices: 52195--52232 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
52185 CTCACATGCC
*
52195 AAAGTGAAAAATTGATTTT
1 AAAGTGAAAAAGTGATTTT
*
52214 AAAGTGAATAAGTGATTTT
1 AAAGTGAAAAAGTGATTTT
52233 TGTGGCCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.37
Consensus pattern (19 bp):
AAAGTGAAAAAGTGATTTT
Found at i:52377 original size:47 final size:47
Alignment explanation
Indices: 52286--52386 Score: 159
Period size: 47 Copynumber: 2.1 Consensus size: 47
52276 AAGAAGTAGT
*
52286 AGTTTATCTGCAAAAGTGGTGGCTTGTCCACAATATTACAAAGTGGCA
1 AGTTTATCTGCAAAAGTGGTGGCTTGTCCACAATACTACAAAGTGG-A
**
52334 A-TTTATCTGCAAAAGTGGTGGCTTGTCCACAATACTATTAAGTGGA
1 AGTTTATCTGCAAAAGTGGTGGCTTGTCCACAATACTACAAAGTGGA
52380 AGTTTAT
1 AGTTTAT
52387 TTACATTATT
Statistics
Matches: 49, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
46 2 0.04
47 46 0.94
48 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.33
Consensus pattern (47 bp):
AGTTTATCTGCAAAAGTGGTGGCTTGTCCACAATACTACAAAGTGGA
Found at i:60044 original size:22 final size:23
Alignment explanation
Indices: 60017--60060 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
60007 TATATTATGT
60017 AATTTATAAT-ATATAAAAATTA
1 AATTTATAATAATATAAAAATTA
*
60039 AATTTATAATAATATATAAATT
1 AATTTATAATAATATAAAAATT
60061 TATTATAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTTATAATAATATAAAAATTA
Found at i:60115 original size:15 final size:14
Alignment explanation
Indices: 60097--60146 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 14
60087 AAATAAAAAT
60097 ATATAAAATTATTAA
1 ATATAAAA-TATTAA
*
60112 ATATTAAATATTAA
1 ATATAAAATATTAA
60126 AT-T-AAAT-TT-A
1 ATATAAAATATTAA
60136 ATATAAAATAT
1 ATATAAAATAT
60147 CTCTACCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
10 3 0.10
11 3 0.10
12 8 0.26
13 2 0.06
14 8 0.26
15 7 0.23
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (14 bp):
ATATAAAATATTAA
Found at i:69778 original size:24 final size:25
Alignment explanation
Indices: 69728--69775 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
69718 AGTTAATAAT
69728 AATTCTCTTTGAGTTTTTCTTTAAG
1 AATTCTCTTTGAGTTTTTCTTTAAG
*
69753 AATTGCTC-TTGAGTTTTTTTTTA
1 AATT-CTCTTTGAGTTTTTCTTTA
69776 GAAGTTGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.19, C:0.10, G:0.12, T:0.58
Consensus pattern (25 bp):
AATTCTCTTTGAGTTTTTCTTTAAG
Found at i:70559 original size:50 final size:50
Alignment explanation
Indices: 70505--70757 Score: 130
Period size: 50 Copynumber: 5.1 Consensus size: 50
70495 GTTACAACAC
* *
70505 CAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTATGAAAG
1 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAGCTATGAAAG
* * * * * * *
70555 CAAAT-CT-TACCTCTTTGAAGTTGCA--GAG-CAAGA-TGAAGTTACGACAT
1 CAAATCCTATACC-C-CTGAAGTTGCAGTGGGTC-GGATTGAAGCTATGAAAG
* * **
70602 CAAATCTTATACCCCTGAAGTTACAGTGGGTCGGATTGAAGCTAAAAAAAG
1 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAGCT-ATGAAAG
** * * * * * *
70653 CAAAT-CTAATTTCCCTAAAGTTACAGTGGAG-CAAGA-TGAGGCTA-CAACAC
1 CAAATCCT-ATACCCCTGAAGTTGCAGTGG-GTC-GGATTGAAGCTATGAA-AG
* * * * *
70703 CAAATCCTATACCCCTGAAGTTGTAGCGAGTCGAATTAAAGCTATGAAAG
1 CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAGCTATGAAAG
70753 CAAAT
1 CAAAT
70758 ATTTTCTCCC
Statistics
Matches: 145, Mismatches: 40, Indels: 36
0.66 0.18 0.16
Matches are distributed among these distances:
47 25 0.17
48 10 0.07
49 15 0.10
50 55 0.38
51 37 0.26
52 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (50 bp):
CAAATCCTATACCCCTGAAGTTGCAGTGGGTCGGATTGAAGCTATGAAAG
Found at i:70726 original size:198 final size:200
Alignment explanation
Indices: 70473--70842 Score: 510
Period size: 198 Copynumber: 1.9 Consensus size: 200
70463 ATCTCCTTGG
* * * * *
70473 AGTTGCAGTGGAGCTAGATGAAGTTACAACACCAAATCCTATACCCCTAAAGTTGTAGTGGGTCG
1 AGTTACAGTGGAGCAAGATGAAGCTACAACACCAAATCCTATACCCCTAAAGTTGTAGCGAGTCG
* * * ** * *
70538 GATTGAAGCTATGAAAGCAAATCTTACCTCTTTGAAGTTGCA-G-AGCAAGATGAAGTTACGACA
66 AATTAAAGCTATGAAAGCAAATATTACCTCCCTAAAGTTGCAGGAAGCAAGATGAAGTTACAACA
* *
70601 TCAAATCTTATACCCCTGAAGTTACAGTGGGTCGGATTGAAGCTAAAAAAAGCAAATCTAATTTC
131 TCAAATCCTATACCCCTGAAGTTACAGTGGATCGGATTGAAGCTAAAAAAAGCAAATCTAATTTC
70666 CCTAA
196 CCTAA
* *
70671 AGTTACAGTGGAGCAAGATGAGGCTACAACACCAAATCCTATACCCCTGAAGTTGTAGCGAGTCG
1 AGTTACAGTGGAGCAAGATGAAGCTACAACACCAAATCCTATACCCCTAAAGTTGTAGCGAGTCG
** *
70736 AATTAAAGCTATGAAAGCAAATATTTTCTCCCTAAAGTTGCAGTGAAGTAAGATGAAGTTACAAC
66 AATTAAAGCTATGAAAGCAAATATTACCTCCCTAAAGTTGCAG-GAAGCAAGATGAAGTTACAAC
* * **
70801 ATTAAATCCTATATCCCTGAAGTTGTAGTGGATCGGATTGAA
130 ATCAAATCCTATACCCCTGAAGTTACAGTGGATCGGATTGAA
70843 ACTACATTAG
Statistics
Matches: 146, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
198 92 0.63
200 1 0.01
201 53 0.36
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (200 bp):
AGTTACAGTGGAGCAAGATGAAGCTACAACACCAAATCCTATACCCCTAAAGTTGTAGCGAGTCG
AATTAAAGCTATGAAAGCAAATATTACCTCCCTAAAGTTGCAGGAAGCAAGATGAAGTTACAACA
TCAAATCCTATACCCCTGAAGTTACAGTGGATCGGATTGAAGCTAAAAAAAGCAAATCTAATTTC
CCTAA
Found at i:70799 original size:100 final size:100
Alignment explanation
Indices: 70473--70842 Score: 433
Period size: 100 Copynumber: 3.7 Consensus size: 100
70463 ATCTCCTTGG
* *
70473 AGTTGCAGTGGAGCTAGATGAAGTTACAACACCAAATCCTATACCCCTAAAGTTGTAGTGGGTCG
1 AGTTGCAGTGGAGCAAGATGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGGTCG
** ** *
70538 GATTGAAGCTATGAAAGCAAATCTTACCTCTTTGA
66 GATTGAAGCTATGAAAGCAAATCTTTTCTCCCTAA
* * * **
70573 AGTTGCA---GAGCAAGATGAAGTTACGACATCAAATCTTATACCCCTGAAGTTACAGTGGGTCG
1 AGTTGCAGTGGAGCAAGATGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGGTCG
** *
70635 GATTGAAGCTAAAAAAAGCAAATCTAATT-TCCCTAA
66 GATTGAAGCT-ATGAAAGCAAATCT-TTTCTCCCTAA
* * * * *
70671 AGTTACAGTGGAGCAAGATGAGGCTACAACACCAAATCCTATACCCCTGAAGTTGTAGCGAGTCG
1 AGTTGCAGTGGAGCAAGATGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGGTCG
* * *
70736 AATTAAAGCTATGAAAGCAAATATTTTCTCCCTAA
66 GATTGAAGCTATGAAAGCAAATCTTTTCTCCCTAA
* * ** * *
70771 AGTTGCAGTGAAGTAAGATGAAGTTACAACATTAAATCCTATATCCCTGAAGTTGTAGTGGATCG
1 AGTTGCAGTGGAGCAAGATGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGGTCG
70836 GATTGAA
66 GATTGAA
70843 ACTACATTAG
Statistics
Matches: 220, Mismatches: 44, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
97 58 0.26
98 22 0.10
99 2 0.01
100 84 0.38
101 54 0.25
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (100 bp):
AGTTGCAGTGGAGCAAGATGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGGTCG
GATTGAAGCTATGAAAGCAAATCTTTTCTCCCTAA
Found at i:70855 original size:100 final size:100
Alignment explanation
Indices: 70296--70846 Score: 410
Period size: 100 Copynumber: 5.6 Consensus size: 100
70286 AAGAATGGAG
* * ** * * * ** *
70296 TGAAGTTACAACACCAAATCCTATATCCTTGAAGTTACAG-AGATTGGATTAAAACTAACAGTAG
1 TGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGATCGGATTGAAACTATGA-AAG
* * * * * **
70360 AAAATCTATATCTCTCTAAAGTTGCATTAGAATAAGA
65 CAAATCT-TTTCTCCCTAAAGTTGCAGTGGAGCAAGA
* * * * * * *
70397 TGAAGCTACAAAACCAAATCCTATACCCTTGAAGTTGCAATAG-TCAGATCT---AC-A-G-AAG
1 TGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGATCGGAT-TGAAACTATGAAAG
* * * ** *
70455 AAAATCTTATCTCCTTGGAGTTGCAGTGGAGCTAGA
65 CAAATCTTTTCTCCCTAAAGTTGCAGTGGAGCAAGA
* * *
70491 TGAAGTTACAACACCAAATCCTATACCCCTAAAGTTGTAGTGGGTCGGATTGAAGCTATGAAAGC
1 TGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGATCGGATTGAAACTATGAAAGC
** ** *
70556 AAATCTTACCTCTTTGAAGTTGCA---GAGCAAGA
66 AAATCTTTTCTCCCTAAAGTTGCAGTGGAGCAAGA
* * * ** * * **
70588 TGAAGTTACGACATCAAATCTTATACCCCTGAAGTTACAGTGGGTCGGATTGAAGCTAAAAAAAG
1 TGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGATCGGATTGAAACT-ATGAAAG
* *
70653 CAAATCTAATT-TCCCTAAAGTTACAGTGGAGCAAGA
65 CAAATCT-TTTCTCCCTAAAGTTGCAGTGGAGCAAGA
* * * *
70689 TGAGGCTACAACACCAAATCCTATACCCCTGAAGTTGTAG-CGAGTCGAATT-AAAGCTATGAAA
1 TGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGA-TCGGATTGAAA-CTATGAAA
* * *
70752 GCAAATATTTTCTCCCTAAAGTTGCAGTGAAGTAAGA
64 GCAAATCTTTTCTCCCTAAAGTTGCAGTGGAGCAAGA
** *
70789 TGAAGTTACAACATTAAATCCTATATCCCTGAAGTTGTAGTGGATCGGATTGAAACTA
1 TGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGATCGGATTGAAACTA
70847 CATTAGCAAG
Statistics
Matches: 359, Mismatches: 72, Indels: 39
0.76 0.15 0.08
Matches are distributed among these distances:
94 57 0.16
95 14 0.04
97 59 0.16
98 24 0.07
99 5 0.01
100 104 0.29
101 93 0.26
102 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (100 bp):
TGAAGTTACAACACCAAATCCTATACCCCTGAAGTTGTAGTGGATCGGATTGAAACTATGAAAGC
AAATCTTTTCTCCCTAAAGTTGCAGTGGAGCAAGA
Found at i:75622 original size:29 final size:28
Alignment explanation
Indices: 75568--75649 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 28
75558 TTTCATAAAA
* * * * *
75568 ATAAAAATATTAAAATTGATACAAACTT
1 ATAAAAATATAAAAAATAATAAAAACCT
75596 ATTAAAAATATAAAAAATAATAAAAACCT
1 A-TAAAAATATAAAAAATAATAAAAACCT
* *
75625 ATAAATATTATAAAAATAAAATAAA
1 ATAAA-AATATAAAAA-ATAATAAA
75650 TATAATATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
28 5 0.11
29 32 0.73
30 7 0.16
ACGTcount: A:0.66, C:0.05, G:0.01, T:0.28
Consensus pattern (28 bp):
ATAAAAATATAAAAAATAATAAAAACCT
Found at i:76240 original size:19 final size:18
Alignment explanation
Indices: 76216--76314 Score: 76
Period size: 19 Copynumber: 5.2 Consensus size: 18
76206 AATTCAAGTT
76216 TTTTATGATTTTTTTATAA
1 TTTTAT-ATTTTTTTATAA
* *
76235 TTTTATATGTTTATATCAA
1 TTTTATATTTTTTTAT-AA
*
76254 TTTTA-ATATTTTTTATAC
1 TTTTATAT-TTTTTTATAA
* *
76272 TTTT-TATGATTTTATAGAA
1 TTTTATAT--TTTTTTATAA
76291 TTTTAATATTTTTTTATAAA
1 TTTT-ATATTTTTTTAT-AA
76311 TTTT
1 TTTT
76315 TAAATATTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
18 17 0.27
19 37 0.59
20 6 0.10
21 3 0.05
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (18 bp):
TTTTATATTTTTTTATAA
Found at i:76267 original size:38 final size:38
Alignment explanation
Indices: 76223--76316 Score: 122
Period size: 38 Copynumber: 2.5 Consensus size: 38
76213 GTTTTTTATG
76223 ATTTTTTTATAA-TTTTAT-ATGTTTATATCAATTTTAAT
1 ATTTTTTTATAATTTTTATGAT-TTTATA-CAATTTTAAT
* *
76261 A-TTTTTTATACTTTTTATGATTTTATAGAATTTTAAT
1 ATTTTTTTATAATTTTTATGATTTTATACAATTTTAAT
76298 ATTTTTTTATAAATTTTTA
1 ATTTTTTTAT-AATTTTTA
76317 AATATTATAA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
37 19 0.39
38 21 0.43
39 9 0.18
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (38 bp):
ATTTTTTTATAATTTTTATGATTTTATACAATTTTAAT
Found at i:76293 original size:37 final size:37
Alignment explanation
Indices: 76225--76314 Score: 112
Period size: 37 Copynumber: 2.4 Consensus size: 37
76215 TTTTTATGAT
76225 TTTTTTATAATTTTATATGTTTATATCAATTTTAATA
1 TTTTTTATAATTTTATATGTTTATATCAATTTTAATA
* *
76262 TTTTTTATACTTTT-TATGATTT-TATAGAATTTTAATA
1 TTTTTTATAATTTTATATG-TTTATAT-CAATTTTAATA
76299 TTTTTTTATAAATTTT
1 -TTTTTTAT-AATTTT
76315 TAAATATTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
36 7 0.15
37 26 0.57
38 8 0.17
39 5 0.11
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.64
Consensus pattern (37 bp):
TTTTTTATAATTTTATATGTTTATATCAATTTTAATA
Found at i:76379 original size:10 final size:10
Alignment explanation
Indices: 76366--76416 Score: 52
Period size: 9 Copynumber: 5.2 Consensus size: 10
76356 ATATTTAATT
76366 TATTTTTTTA
1 TATTTTTTTA
*
76376 TA-TTTTTGA
1 TATTTTTTTA
* *
76385 TAATTTTTGA
1 TATTTTTTTA
76395 TAATTTTTTT-
1 T-ATTTTTTTA
76405 TATTTTTTTA
1 TATTTTTTTA
76415 TA
1 TA
76417 AGTTACTATG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
9 16 0.46
10 13 0.37
11 6 0.17
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.73
Consensus pattern (10 bp):
TATTTTTTTA
Found at i:76391 original size:39 final size:37
Alignment explanation
Indices: 76340--76416 Score: 86
Period size: 39 Copynumber: 2.0 Consensus size: 37
76330 TGCTTTATTA
76340 ATTTTTATA-TTTTCA-AATATTTAATTTATTTTTTTAT
1 ATTTTTATATTTTTCATAAT-TTT-ATTTATTTTTTTAT
* *
76377 ATTTTTGATAATTTTTGATAATTTTTTTTATTTTTTTAT
1 ATTTTT-AT-ATTTTTCATAATTTTATTTATTTTTTTAT
76416 A
1 A
76417 AGTTACTATG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
37 6 0.18
38 2 0.06
39 15 0.44
40 8 0.24
41 3 0.09
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (37 bp):
ATTTTTATATTTTTCATAATTTTATTTATTTTTTTAT
Found at i:76403 original size:11 final size:10
Alignment explanation
Indices: 76377--76402 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
76367 ATTTTTTTAT
76377 ATTTTTGATA
1 ATTTTTGATA
76387 ATTTTTGATA
1 ATTTTTGATA
76397 ATTTTT
1 ATTTTT
76403 TTTATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (10 bp):
ATTTTTGATA
Found at i:76411 original size:20 final size:20
Alignment explanation
Indices: 76364--76417 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
76354 AAATATTTAA
76364 TTTATTTTTTTAT-ATTTTT
1 TTTATTTTTTTATAATTTTT
** * *
76383 GATAATTTTTGATAATTTTT
1 TTTATTTTTTTATAATTTTT
76403 TTTATTTTTTTATAA
1 TTTATTTTTTTATAA
76418 GTTACTATGA
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (20 bp):
TTTATTTTTTTATAATTTTT
Found at i:79023 original size:216 final size:215
Alignment explanation
Indices: 78321--80479 Score: 2453
Period size: 216 Copynumber: 10.1 Consensus size: 215
78311 GGAAATAAAA
* * * * * * *
78321 TTTTAATTCAAAGATCAAAAGTTGTTTATAAAATGACAAATTATTTATACGAAACGATGTGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * ** *
78386 ACCGAGCATGGAATGCTCGGAAAATTTTTC-AGAGGAATGGATCATCTTGAA-ACTTTAACGAA-
66 CCCGAGCATGGAATG-TTGAAAAATTGCTCGA-AGGAATGGATCATCTTGAATACTTTAAGGAAT
* * * * * *
78448 GGAAGTTATAAAAGAACTTGTAAATGTTTTACAAGTTCGGAAGTTCGT-CATAGAATCAAGAGAG
129 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCA-AGAACCAAGAGAG
* *
78512 AAATAATTCTCACATAAATGAGT
193 AAATAATTCTCACGTAAATAAGT
* ** ** * *
78535 CTTTAAAACAAAGACCAAAACAT-TTTA-AAATATGACAATCTATTTAGACCAAATGATGCAATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * *
78598 TCACGGGAATGAAATATTCGAAAAATTGCTCGGAGGAATGGATCGTCTTGAATACTTTAAGGAAT
65 TCCCGAGCATGGAATGTT-GAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAT
* * *
78663 CGAAGTTATAAAAGAACTCGTAAAAATTTGACCAGATC-GAAGTTCGTCCAACAACCAAGAGAGA
129 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGA
* *
78727 AATAATTCTCACGTAAATACGA
194 AATAATTCTCACGTAAATAAGT
*
78749 TTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * * *
78814 CCCGTGCATGGAATGTTGAAAAAATTGATCGAAGGAATGGATTATCTTGAACAATTTAATGAACC
66 CCCGAGCATGGAATGTTG-AAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC
* *
78879 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAACATCGGAAGTTCGTCCAAGAACCAAGAGAGGA
130 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAA
* * *
78944 ACAATTCCCACGTAAATAATT
195 ATAATTCTCACGTAAATAAGT
* * * * * * * *
78965 TTTTGATTTAAACACCAAAACTT-TTTCACAAAATGAAAAACTATTTACACCGAATGATGTGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGCGATT
** *
79029 TTTCGAGCATGGAATGTTCGAAAAACTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAT
65 TCCCGAGCATGGAATGTT-GAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAT
* *
79094 CGAAGTTATGAAGGAACTCGTAAAAGTTTGACAAGATC-GAAGTTCGTCCAAGAACCAAGAGAGA
129 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGA
*
79158 AATAATTCTCACGTAAATAAGA
194 AATAATTCTCACGTAAATAAGT
* * *
79180 TTTTAATTCAAAGACCAAATGTTGTTTAAAAAATGTCAAACTATTTAGACCAAATGATGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* ** * * *
79245 CTCGAGCATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTT--ATACTTTAACGAA-C
66 CCCGAGCATGGAATGTT-GAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC
* * * *
79307 AGAAGTTATAAAAGAACCCGTAAAAGTTTCACAAGTTCAGAAGTTCGTCCAAGAACCAAGAGAGA
130 -GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGA
* * *
79372 AACAATACTCACGTAAACAAGT
194 AATAATTCTCACGTAAATAAGT
* *
79394 TTTTAATTCAAACACCAAAAGTTGTTTACAAAATGAC-AACATATTTAGACCAAATGATGTGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAC-TATTTAGACCAAATGATGCGATT
* * * * *
79458 TCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAATGCATCGTCTTCATTACTTTAAGGAAT
65 TCCCGAGCATGGAATGTT-GAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAAT
* ** * * * **
79523 AGATTTTATAAAAGAACTCGTAAAAGTTCGACAAGATCGGAAGTTTGTCCAA-AACCCATGTCAG
129 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAA-CCAAGAGAG
* *
79587 AAATAATTCTCATGTAAATAAGA
193 AAATAATTCTCACGTAAATAAGT
* * * *
79610 TTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAACTATTTATACCAAACGATGTGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * *
79675 CCCGAGCATGGAATGCTCGGAAAATTTCTC-AGAGGAATGGATCATCTTGAA-ACTTTAACGAA-
66 CCCGAGCATGGAATG-TTGAAAAATTGCTCGA-AGGAATGGATCATCTTGAATACTTTAAGGAAT
* * * * * * **
79737 GGAAGTTACAAAAGAACTTGTAAAAGTTTTAAAAGTTCGGAAGTTCGT-CATAGAATTAAGAGAG
129 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCA-AGAACCAAGAGAG
* *
79801 AAATAATTCTCACATAAATGAGT
193 AAATAATTCTCACGTAAATAAGT
* ** ** * * *
79824 CTTTAAACCAAAGACCAAAACAT-TTTA-AAATATGACAATCTATTTAGACCAAATAACGCGATT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAA-ATGACAAACTATTTAGACCAAATGATGCGATT
* * * * * * *
79887 TCACG-GTAATGGAATATTCGAAAAATTGATGGAAGGAATGGATCGTCTTGAATATTTTAAGGAA
65 TCCCGAG-CATGGAATGTT-GAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAA
* *
79951 TCGAAGTTATAAAAGAACTCGTAAAAGTTTGACGAGATC-GAAGTTCATCCAAGAACCAAGAGAG
128 TCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAG
* *
80015 AAACAATTCCCACGTAAATAAGTT
193 AAATAATTCTCACGTAAATAAG-T
* * * * *
80039 TTTTAATCCAAAGACCAAAACTTGTTTAAAAAAAGACAAACTATTTAGACCAAATGATGCTATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* * * * * *
80104 CCCGTGCATGGAATATTCAAAAAATTGATCAAAGGAATGGATCATCTTAAATACTTTAAGGAATC
66 CCCGAGCATGGAATGTT-GAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATC
*
80169 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC-GAAGTTCGTCCAAGAACCAAGAGATAA
130 GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAA
* *
80233 ATAATTCTCATGTAAATAAGA
195 ATAATTCTCACGTAAATAAGT
*
80254 TTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
1 TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
* ** * * * *
80319 CCCGTGCATGGAATGCTCAAAAAATTGCTTGAAGGAATGG-T--TCGTCAATTACTTTAACGAAT
66 CCCGAGCATGGAATG-TTGAAAAATTGCTCGAAGGAATGGATCATCTTGAA-TACTTTAAGGAAT
* * *
80381 AGAAGTTATAAAAGATCTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGA
129 CGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGA
* *
80446 AACAATACTCACGTAAATAAGT
194 AATAATTCTCACGTAAATAAGT
80468 TTTTAATTCAAA
1 TTTTAATTCAAA
80480 CAC
Statistics
Matches: 1639, Mismatches: 267, Indels: 78
0.83 0.13 0.04
Matches are distributed among these distances:
212 15 0.01
213 229 0.14
214 409 0.25
215 451 0.28
216 526 0.32
217 9 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (215 bp):
TTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTT
CCCGAGCATGGAATGTTGAAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAATCG
AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAA
TAATTCTCACGTAAATAAGT
Found at i:79542 original size:429 final size:429
Alignment explanation
Indices: 78313--80479 Score: 2591
Period size: 429 Copynumber: 5.0 Consensus size: 429
78303 GAATGCTCGG
* * * * * * *
78313 AAATAAAATTTTAATTCAAAGATCAAAAGTTGTTTATAAAATGACAAATTATTTATACGAAACGA
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACCAAATGA
* * * * *
78378 TGTGATTTACCGAGCATGGAATGCTCGGAAAATT-TTTCAGAGGAATGGATCATCTTGAAACTTT
66 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGATTCA-AGGAATGGATCATCTTGAAACTTT
* * * *
78442 AACGAA-GGAAGTTATAAAAGAACTTGTAAATGTTTTACAAGTTCGGAAGTTCGT-CATAGAATC
130 AACGAACGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AGAACC
* * * ** *
78505 AAGAGAGAAATAATTCTCACATAAATGAGTCTTTAAAACAAAGACCAAAACATTTTA-AAATATG
194 AAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTTACAAA-ATG
* * * * * *
78569 ACAATC-TATTTAGACCAAATGATGCAATTTCACGGGAATGAAATATTCGAAAAATTGCTCGGAG
258 ACAA-CATATTTAGACCAAATGATGCGATTTCACGAGCATGGAATGTTCGAAAAATTGCTCGAAG
* *
78633 GAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAATTTGACCAG
322 GAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAG
*
78698 ATCGAAGTTCGTCCAACAACCAAGAGAGAAATAATTCTCACGT
387 ATCGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
* * *
78741 AAATACGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACCAAATGA
* * *
78806 TGCGATTTCCCGTGCATGGAATGTT-GAAAAAATTGA-TCGAAGGAATGGATTATCTTGAACAAT
66 TGCGATTTCCCGAGCATGGAATGTTCG-AAAAATTGATTC-AAGGAATGGATCATCTTGAA-ACT
* * **
78869 TTAATGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAACATCGGAAGTTCGTCCAAGAAC
128 TTAACGAACGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAAC
* * * * * * *
78934 CAAGAGAGGAACAATTCCCACGTAAATAATTTTTTGATTTAAACACCAAAACTTTTTCACAAAAT
193 CAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTT-ACAAAAT
* * * * ** *
78999 GA-AAAACTATTTACACCGAATGATGTGATTTTTCGAGCATGGAATGTTCGAAAAACTGCTCGAA
257 GACAACA-TATTTAGACCAAATGATGCGATTTCACGAGCATGGAATGTTCGAAAAATTGCTCGAA
* * *
79063 GGAATGGATCATCTTGAATACTTTAAGGAATCGAAGTTATGAAGGAACTCGTAAAAGTTTGACAA
321 GGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAA
79128 GATCGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
386 GATCGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
* *
79172 AAATAAGATTTTAATTCAAAGACCAAATGTTGTTTAAAAAATGTCAAACTATTTAGACCAAATGA
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACCAAATGA
* ** * * * *
79237 TGCGATTTCTCGAGCATCAAATGTTCGAAAAATTGCTTGAAGGAATGGATCGTCTT-ATACTTTA
66 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGATTCAAGGAATGGATCATCTTGAAACTTTA
* * * *
79301 ACGAACAGAAGTTATAAAAGAACCCGTAAAAGTTTCACAAGTTCAGAAGTTCGTCCAAGAACCAA
131 ACGAACGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA
* * * * *
79366 GAGAGAAACAATACTCACGTAAACAAGTTTTTAATTCAAACACCAAAAGTTGTTTACAAAATGAC
196 GAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-TTTACAAAATGAC
* * *
79431 AACATATTTAGACCAAATGATGTGATTTCCCGAGCATGGAATGTTCAAAAAATTGCTCGAAGGAA
260 AACATATTTAGACCAAATGATGCGATTTCACGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA
* * * * ** *
79496 TGCATCGTCTTCATTACTTTAAGGAATAGATTTTATAAAAGAACTCGTAAAAGTTCGACAAGATC
325 TGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC
* * ** *
79561 GGAAGTTTGTCCAA-AACCCATGTCAGAAATAATTCTCATGT
390 -GAAGTTCGTCCAAGAA-CCAAGAGAGAAATAATTCTCACGT
* * *
79602 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAACTATTTATACCAAACGA
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACCAAATGA
* * *
79667 TGTGATTTCCCGAGCATGGAATGCTCGGAAAATT--TCTCAGAGGAATGGATCATCTTGAAACTT
66 TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGAT-TCA-AGGAATGGATCATCTTGAAACTT
* * * * *
79730 TAACGAA-GGAAGTTACAAAAGAACTTGTAAAAGTTTTAAAAGTTCGGAAGTTCGT-CATAGAAT
129 TAACGAACGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AGAAC
* * * * ** *
79793 TAAGAGAGAAATAATTCTCACATAAATGAGTCTTTAAACCAAAGACCAAAACATTTTA-AAATAT
193 CAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTTACAAA-AT
* * * * * *
79857 GACAATC-TATTTAGACCAAATAACGCGATTTCACG-GTAATGGAATATTCGAAAAATTGATGGA
257 GACAA-CATATTTAGACCAAATGATGCGATTTCACGAG-CATGGAATGTTCGAAAAATTGCTCGA
* *
79920 AGGAATGGATCGTCTTGAATATTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACG
320 AGGAATGGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
79985 AGATCGAAGTTCATCCAAGAACCAAGAGAGAAACAATTCCCACGT
385 AGATCGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
* * * *
80030 AAATAAGTTTTTTAATCCAAAGACCAAAACTTGTTTAAAAAAAGACAAACTATTTAGACCAAATG
1 AAATAAG-ATTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACCAAATG
* * * * *
80095 ATGCTATTTCCCGTGCATGGAATATTCAAAAAATTGA-TCAAAGGAATGGATCATCTTAAATACT
65 ATGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGATTC-AAGGAATGGATCATCTTGAA-ACT
* *
80159 TTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATC-GAAGTTCGTCCAAGAA
128 TTAACGAA-CGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAA
* * * **
80222 CCAAGAGATAAATAATTCTCATGTAAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAA
192 CCAAGAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTT-TTTACAAAA
* * * * *
80287 TGACAA-ACTATTTAGACCAAATGATGCGATTTCCCGTGCATGGAATGCTCAAAAAATTGCTTGA
256 TGACAACA-TATTTAGACCAAATGATGCGATTTCACGAGCATGGAATGTTCGAAAAATTGCTCGA
* * * *
80351 AGGAATGGTTCGTC---AATTACTTTAACGAATAGAAGTTATAAAAGATCTCGTAAAAGTTTGAC
320 AGGAATGGATCGTCTTGAA-TACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGAC
* * *
80413 AAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGT
384 AAGATC-GAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
*
80460 AAATAAGTTTTTAATTCAAA
1 AAATAAGATTTTAATTCAAA
80480 CAC
Statistics
Matches: 1479, Mismatches: 221, Indels: 77
0.83 0.12 0.04
Matches are distributed among these distances:
427 1 0.00
428 146 0.10
429 515 0.35
430 432 0.29
431 376 0.25
432 9 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (429 bp):
AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTAAAAAATGACAAACTATTTAGACCAAATGA
TGCGATTTCCCGAGCATGGAATGTTCGAAAAATTGATTCAAGGAATGGATCATCTTGAAACTTTA
ACGAACGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAA
GAGAGAAATAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAACTTTTTACAAAATGACA
ACATATTTAGACCAAATGATGCGATTTCACGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAAT
GGATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCG
AAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCACGT
Found at i:79606 original size:645 final size:642
Alignment explanation
Indices: 78313--80479 Score: 2818
Period size: 645 Copynumber: 3.4 Consensus size: 642
78303 GAATGCTCGG
* * * * *
78313 AAATAAAATTTTAATTCAAAGATCAAAAGTTGTTTATAAAATGACAAATTATTTATACGAAACGA
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTATACCAAACGA
* * **
78378 TGTGATTTACCGAGCATGGAATGCTCGGAAAATTTTTCAGAGGAATGGATCATCTTGAAACTTTA
66 TGTGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAGAGGAATGGATCATCTTGAAACTTTA
* * * *
78443 ACGAAGGAAGTTATAAAAGAACTTGTAAATGTTTTACAAGTTCGGAAGTTCGTCATAGAATCAAG
131 ACGAAGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCATAGAACCAAG
* *
78508 AGAGAAATAATTCTCACATAAATGAGTCTTTAAAACAAAGACCAAAACATTTTAAAATATGACAA
196 AGAGAAATAATTCTCACATAAATAAGTCTTTAAATCAAAGACCAAAACATTTTAAAATATGACAA
* *
78573 TCTATTTAGACCAAATGATGCAATTTCACGGGAATGAAATATTCGAAAAATTGCTCGGAGGAATG
261 TCTATTTAGACCAAATGATGCGATTTCAC-GGAATGAAATATTCGAAAAATTGCTCGAAGGAATG
* *
78638 GATCGTCTTGAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAATTTGACCAGATCGA
325 GATCGTCTT-AATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGA
* * * *
78703 AGTTCGTCCAACAACCAAGAGAGAAATAATTCTCACGTAAATACGATTTTAATTCAAAGACCAAA
389 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAA
* * *
78768 TGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCCCGTGCATGGAATGTTGA
454 AGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGTGCATGGAATGTTCA
* * * * * *
78833 AAAAATTGATCGAAGGAATGGATTATCTTGAACAATTTAATGAACCGAAGTTATAAAAGAACTCG
519 AAAAATTGATCGAAGGAATGGATCATCTTAAATACTTTAAGGAATCGAAGTTATAAAAGAACTCG
* * * * *
78898 TAAAAGTTTGACAACATCGGAAGTTCGTCCAAGAACCAAGAGAGGAACAATTCCCACGT
584 TAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGT
** * * * * * * * *
78957 AAATAATTTTTTGATTTAAACACCAAAACTT-TTTCACAAAATGAAAAACTATTTACACCGAATG
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTT-ACAAAATGACAAACTATTTATACCAAACG
** * *
79021 ATGTGATTTTTCGAGCATGGAATGTTCGAAAAACTGCTC-GAAGGAATGGATCATCTTGAATACT
65 ATGTGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAG-AGGAATGGATCATCTTGAA-ACT
* * * * *
79085 TTAAGGAATCGAAGTTATGAAGGAACTCGTAAAAGTTTGACAAGATC-GAAGTTCGTCCA-AGAA
128 TTAACGAA-GGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CATAGAA
* * *** *
79148 CCAAGAGAGAAATAATTCTCACGTAAATAAGAT-TTTAATTCAAAGACCAAATGTTGTTTAAAAA
191 CCAAGAGAGAAATAATTCTCACATAAATAAG-TCTTTAAATCAAAGACCAAAACAT-TTTAAAAT
* * * * * * *
79212 ATGTCAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATCAAATGTTCGAAAAATTGCTTGA
254 ATGACAATCTATTTAGACCAAATGATGCGATTTCACG-GAATGAAATATTCGAAAAATTGCTCGA
* * *
79277 AGGAATGGATCGTCTT-ATACTTTAACGAA-CAGAAGTTATAAAAGAACCCGTAAAAGTTTCACA
318 AGGAATGGATCGTCTTAATACTTTAAGGAATC-GAAGTTATAAAAGAACTCGTAAAAGTTTGACA
* * *
79340 AGTTCAGAAGTTCGTCCAAGAACCAAGAGAGAAACAATACTCACGTAAACAAGTTTTTAATTCAA
382 AGATC-GAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
* *
79405 ACACCAAAAGTTGTTTACAAAATGAC-AACATATTTAGACCAAATGATGTGATTTCCCGAGCATG
446 AGACCAAAAGTTGTTTACAAAATGACAAAC-TATTTAGACCAAATGATGTGATTTCCCGTGCATG
* * * * * * **
79469 GAATGTTCAAAAAATTGCTCGAAGGAATGCATCGTCTTCATTACTTTAAGGAATAGATTTTATAA
510 GAATGTTCAAAAAATTGATCGAAGGAATGGATCATCTTAAATACTTTAAGGAATCGAAGTTATAA
* * * **
79534 AAGAACTCGTAAAAGTTCGACAAGATCGGAAGTTTGTCCAA-AACCCATGTCAGAAATAATTCTC
575 AAGAACTCGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAA-CCAAGAGAGAAATAATTCTC
79598 ATGT
639 ATGT
*
79602 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTATAAAATGACAAACTATTTATACCAAACGA
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTATACCAAACGA
* *
79667 TGTGATTTCCCGAGCATGGAATGCTCGGAAAATTTCTCAGAGGAATGGATCATCTTGAAACTTTA
66 TGTGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAGAGGAATGGATCATCTTGAAACTTTA
* * * * **
79732 ACGAAGGAAGTTACAAAAGAACTTGTAAAAGTTTTAAAAGTTCGGAAGTTCGTCATAGAATTAAG
131 ACGAAGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCATAGAACCAAG
* *
79797 AGAGAAATAATTCTCACATAAATGAGTCTTTAAACCAAAGACCAAAACATTTTAAAATATGACAA
196 AGAGAAATAATTCTCACATAAATAAGTCTTTAAATCAAAGACCAAAACATTTTAAAATATGACAA
* * * * *
79862 TCTATTTAGACCAAATAACGCGATTTCACGGTAATGGAATATTCGAAAAATTGATGGAAGGAATG
261 TCTATTTAGACCAAATGATGCGATTTCACGG-AATGAAATATTCGAAAAATTGCTCGAAGGAATG
* *
79927 GATCGTCTTGAATATTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACGAGATCGA
325 GATCGTCTT-AATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGA
* * *
79992 AGTTCATCCAAGAACCAAGAGAGAAACAATTCCCACGTAAATAAGTTTTTTAATCCAAAGACCAA
389 AGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG-TTTTTAATTCAAAGACCAA
* * * *
80057 AACTTGTTTAAAAAAAGACAAACTATTTAGACCAAATGATGCT-ATTTCCCGTGCATGGAATATT
453 AAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATG-TGATTTCCCGTGCATGGAATGTT
*
80121 CAAAAAATTGATCAAAGGAATGGATCATCTTAAATACTTTAAGGAATCGAAGTTATAAAAGAACT
517 CAAAAAATTGATCGAAGGAATGGATCATCTTAAATACTTTAAGGAATCGAAGTTATAAAAGAACT
*
80186 CGTAAAAGTTTGACAAGATC-GAAGTTCGTCCAAGAACCAAGAGATAAATAATTCTCATGT
582 CGTAAAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGT
* * *
80246 AAATAAGATTTTAATTCAAAGACCAAATGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
1 AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTATACCAAACGA
* * * * * *
80311 TGCGATTTCCCGTGCATGGAATGCTCAAAAAATTGCT-TGAAGGAATGG-T--TCGTCAATTACT
66 TGTGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAG-AGGAATGGATCATCTTGAA--ACT
* *
80372 TTAACGAATAGAAGTTATAAAAGATCTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCA-AGAA
128 TTAACGAA-GGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGT-CATAGAA
* * * * *
80436 CCAAGAGAGAAACAATACTCACGTAAATAAGTTTTTAATTCAAA
191 CCAAGAGAGAAATAATTCTCACATAAATAAGTCTTTAAATCAAA
80480 CAC
Statistics
Matches: 1300, Mismatches: 193, Indels: 60
0.84 0.12 0.04
Matches are distributed among these distances:
641 5 0.00
642 1 0.00
643 126 0.10
644 470 0.36
645 578 0.44
646 120 0.09
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (642 bp):
AAATAAGATTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTATACCAAACGA
TGTGATTTCCCGAGCATGGAATGCTCGAAAAATTGCTCAGAGGAATGGATCATCTTGAAACTTTA
ACGAAGGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCATAGAACCAAG
AGAGAAATAATTCTCACATAAATAAGTCTTTAAATCAAAGACCAAAACATTTTAAAATATGACAA
TCTATTTAGACCAAATGATGCGATTTCACGGAATGAAATATTCGAAAAATTGCTCGAAGGAATGG
ATCGTCTTAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGATCGAAG
TTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGTGATTTCCCGTGCATGGAATGTTCAAA
AAATTGATCGAAGGAATGGATCATCTTAAATACTTTAAGGAATCGAAGTTATAAAAGAACTCGTA
AAAGTTTGACAAGATCGGAAGTTCGTCCAAGAACCAAGAGAGAAATAATTCTCATGT
Done.