genome.fa.s14719.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014719.1 Kokia drynarioides strain JFW-HI SEQ_129758, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175347

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3630--3667	18	2.2	17	90	4	58	31	28	21	18	1.97
3689--3728	18	2.2	18	90	0	62	35	25	20	20	1.96
3697--3736	18	2.2	18	95	0	71	35	22	20	22	1.96
12473--12544	27	2.7	27	93	0	117	23	30	13	31	1.94
17977--18050	37	2.0	37	84	5	96	35	22	9	32	1.87
22916--22963	24	1.9	26	84	16	66	45	0	22	31	1.53
23038--23172	23	6.0	22	74	14	96	13	23	23	39	1.90
32282--32397	54	2.1	55	96	3	218	41	10	17	31	1.83
40602--40626	12	2.1	12	100	0	50	36	32	16	16	1.90
44783--44853	33	2.2	33	100	0	142	25	11	14	49	1.76
50068--50674	89	6.9	88	76	13	446	31	1	28	38	1.68
50127--50674	30	18.6	28	73	17	312	31	1	28	38	1.68
50066--50674	59	10.3	58	81	7	550	31	1	28	38	1.68
76327--76796	30	15.9	29	77	10	386	31	1	29	37	1.67
76327--76827	59	8.5	59	81	7	527	31	1	29	37	1.68
78605--78661	6	9.8	6	84	7	82	50	1	0	47	1.11
78592--78661	23	3.0	22	81	6	77	47	1	2	48	1.25
78605--78668	11	5.6	11	87	3	83	51	1	0	46	1.10
78605--78671	17	3.9	17	84	5	91	53	1	0	44	1.09
82132--82178	24	2.0	24	83	8	60	14	31	4	48	1.63
82465--82492	14	2.0	14	100	0	56	50	0	14	35	1.43
85803--85845	18	2.4	18	88	7	61	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88231--88284	11	4.7	12	76	15	51	68	1	1	27	1.10
90924--91090	23	7.3	23	82	5	194	36	4	11	46	1.62
90927--91090	69	2.4	69	87	2	231	37	4	12	46	1.61
91160--91273	36	3.2	36	87	0	156	28	9	24	37	1.87
94371--94409	6	6.5	6	87	0	51	46	0	30	23	1.53
100671--101012	187	1.8	188	82	5	442	28	23	15	31	1.96
110930--110971	22	2.0	22	90	4	68	38	0	0	61	0.96
112340--112383	21	2.3	19	84	11	54	59	2	2	36	1.23
113181--113221	18	2.4	16	81	18	55	58	0	9	31	1.31
113186--113222	18	2.0	19	94	5	67	59	0	8	32	1.27
113409--113471	29	2.1	30	82	2	74	33	9	7	49	1.64
118188--118229	22	2.0	22	86	13	61	61	4	2	30	1.29
118216--118269	21	2.7	21	81	16	69	44	1	1	51	1.22
120030--120069	15	2.5	17	84	12	57	35	2	0	62	1.09
121937--121983	2	23.0	2	91	4	76	46	2	2	48	1.25
134453--134483	16	1.9	16	100	0	62	16	0	0	83	0.64
134628--134666	16	2.5	16	87	4	53	0	15	2	82	0.79
138785--138810	13	2.0	13	100	0	52	30	15	7	46	1.74
138472--138927	231	2.0	222	90	3	714	40	12	10	37	1.77
141759--141797	6	6.5	6	87	0	51	23	30	0	46	1.53
153343--153452	35	3.2	34	83	7	125	41	1	2	53	1.25
153375--153452	6	13.5	6	72	17	58	44	2	1	51	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153378--153433	11	4.9	11	78	10	51	37	3	1	57	1.27
153343--153452	52	2.1	52	87	0	157	41	1	2	53	1.25
153343--153452	17	6.4	17	82	7	132	41	1	2	53	1.25
154030--154346	29	10.8	29	79	8	288	34	29	3	32	1.75
154025--154295	59	4.6	58	80	6	278	34	30	3	31	1.75
154029--154346	59	5.4	57	77	12	272	34	29	3	32	1.75
158209--158267	25	2.4	25	80	5	66	23	3	6	66	1.32
167863--167911	25	2.0	25	87	0	71	51	22	10	16	1.74
169195--169233	13	3.0	13	88	0	51	48	17	2	30	1.61
171864--172070	91	2.3	91	90	1	326	38	9	11	41	1.73
172491--172585	45	2.1	46	82	2	111	38	21	8	31	1.83

Tables:   1

The End!