Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001472.1 Kokia drynarioides strain JFW-HI SEQ_112998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1989
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36


Found at i:306 original size:37 final size:38

Alignment explanation


    Indices: 216--317  Score: 107
    Period size: 37  Copynumber: 2.6  Consensus size: 38

        206 ACCTCAAGTT

                                  *               ** 
        216 GATGAGACACTGGGTATCATTATTTTACTTCAGATAGATTC
          1 GATGAGACACTGGGTATC---ACTTTACTTCAGATAGAGCC

                  **                      *       
        257 GATGAGGTACTGGGTATCACTTTACTTCAGCTAG-GCC
          1 GATGAGACACTGGGTATCACTTTACTTCAGATAGAGCC

                           *        
        294 GATGAGACACTGGGTGTCACTTTA
          1 GATGAGACACTGGGTATCACTTTA

        318 TTGCTTCGAA


Statistics
Matches: 52,  Mismatches: 9, Indels: 4
        0.80            0.14        0.06

Matches are distributed among these distances:
  37   22  0.42
  38   14  0.27
  41   16  0.31

ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32


Consensus pattern (38 bp):   
GATGAGACACTGGGTATCACTTTACTTCAGATAGAGCC
Done.