Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014721.1 Kokia drynarioides strain JFW-HI SEQ_129760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14966
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Warning! 90 characters in sequence are not A, C, G, or T
Found at i:1493 original size:23 final size:23
Alignment explanation
Indices: 1467--1523 Score: 87
Period size: 23 Copynumber: 2.5 Consensus size: 23
1457 TGACGTGGCA
1467 TCTAGTCAGCAGCTTCTAAAAGC
1 TCTAGTCAGCAGCTTCTAAAAGC
* * *
1490 TCTAGTCAGCAGCTTGTAGAAGG
1 TCTAGTCAGCAGCTTCTAAAAGC
1513 TCTAGTCAGCA
1 TCTAGTCAGCA
1524 ATGATGGACG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (23 bp):
TCTAGTCAGCAGCTTCTAAAAGC
Found at i:2689 original size:59 final size:59
Alignment explanation
Indices: 2626--2854 Score: 200
Period size: 59 Copynumber: 3.9 Consensus size: 59
2616 TTTGGATTCG
* ** *
2626 TGGGGGTGAAATGGTAATTTTGGGAAAATTCGAGGTTAAAAATAGAATTTTTAGACATT
1 TGGGGGTAAAATGGTAATTTTGGGAAGTTTCGAGGTTAAAAATGGAATTTTTAGACATT
* * * *
2685 TGGGGGTAAAAGGGTAATTTTGAG-AGTTTCGAGGTTGAAAAATGGAGTTTTTGGACATT
1 TGGGGGTAAAATGGTAATTTTGGGAAGTTTCGAGGTT-AAAAATGGAATTTTTAGACATT
* * * * *
2744 CGAGGGTAAAATGGTAATTTTTGGAAGTTTCG-GTGTCAAAAATGGAATTTTTGGA-AGTTT
1 TGGGGGTAAAATGGTAATTTTGGGAAGTTTCGAG-GTTAAAAATGGAATTTTTAGACA--TT
** * * *
2804 TGGGGCCAAAAAT-G-AGATTTTTGGAAG-TTCGGGGGTAAAAATGGAATTTTT
1 TGGGG-GTAAAATGGTA-ATTTTGGGAAGTTTCGAGGTTAAAAATGGAATTTTT
2855 GGAAGTTTCG
Statistics
Matches: 141, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
58 11 0.08
59 98 0.70
60 27 0.19
61 5 0.04
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.34
Consensus pattern (59 bp):
TGGGGGTAAAATGGTAATTTTGGGAAGTTTCGAGGTTAAAAATGGAATTTTTAGACATT
Found at i:2765 original size:29 final size:29
Alignment explanation
Indices: 2605--2768 Score: 97
Period size: 29 Copynumber: 5.6 Consensus size: 29
2595 TACCCGCGGC
*
2605 AAAATGGTAA-TTTTGG--ATTCGTGGGGGT
1 AAAATGGTAATTTTTGGACATTC--GAGGGT
* * * *
2633 GAAATGGTAATTTTGGGAAAATTCGAGGTT
1 AAAATGGTAATTTTTGG-ACATTCGAGGGT
* * * *
2663 AAAAATAG-AATTTTTAGACATTTGGGGGT
1 -AAAATGGTAATTTTTGGACATTCGAGGGT
* ** *
2692 AAAAGGGTAA-TTTTGAGAGTTTCGAGGTTGA
1 AAAATGGTAATTTTTG-GACATTCGAGG--GT
*
2723 AAAATGG-AGTTTTTGGACATTCGAGGGT
1 AAAATGGTAATTTTTGGACATTCGAGGGT
2751 AAAATGGTAATTTTTGGA
1 AAAATGGTAATTTTTGGA
2769 AGTTTCGGTG
Statistics
Matches: 99, Mismatches: 26, Indels: 21
0.68 0.18 0.14
Matches are distributed among these distances:
28 26 0.26
29 31 0.31
30 21 0.21
31 17 0.17
32 4 0.04
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (29 bp):
AAAATGGTAATTTTTGGACATTCGAGGGT
Found at i:2795 original size:30 final size:29
Alignment explanation
Indices: 2760--2972 Score: 229
Period size: 30 Copynumber: 7.2 Consensus size: 29
2750 TAAAATGGTA
*
2760 ATTTTTGGAAGTTTCGGTGTCAAAAATG-G
1 ATTTTTGGAAGTTTCGGGGT-AAAAATGAG
* *
2789 AATTTTTGGAAGTTTTGGGGCCAAAAATGAG
1 -ATTTTTGGAAGTTTCGGGG-TAAAAATGAG
2820 ATTTTTGGAAG-TTCGGGGGTAAAAATG-G
1 ATTTTTGGAAGTTTC-GGGGTAAAAATGAG
*
2848 AATTTTTGGAAGTTTCGGAGTTAAAAATGAG
1 -ATTTTTGGAAGTTTCGG-GGTAAAAATGAG
2879 ATTTTTGGAAG-TTCGAGGGTAAAAATGAG
1 ATTTTTGGAAGTTTCG-GGGTAAAAATGAG
* * *
2908 ATTTTTGAAAGTTTCGAGTTCAAAAATGAG
1 ATTTTTGGAAGTTTCGGGGT-AAAAATGAG
* *
2938 ATTTTTGGAAATTTGGGGGTAAAAATG-G
1 ATTTTTGGAAGTTTCGGGGTAAAAATGAG
2966 AATTTTT
1 -ATTTTT
2973 TTTGATAAAA
Statistics
Matches: 157, Mismatches: 15, Indels: 23
0.81 0.08 0.12
Matches are distributed among these distances:
28 2 0.01
29 62 0.39
30 91 0.58
31 2 0.01
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.36
Consensus pattern (29 bp):
ATTTTTGGAAGTTTCGGGGTAAAAATGAG
Found at i:2855 original size:59 final size:59
Alignment explanation
Indices: 2760--3026 Score: 302
Period size: 59 Copynumber: 4.6 Consensus size: 59
2750 TAAAATGGTA
* * *
2760 ATTTTTGGAAGTTTC-GGTGTCAAAAATGGAATTTTTGGAAGTTTTGGGGCCAAAAATGAG
1 ATTTTTGGAAG-TTCGGGGGT-AAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGAG
* *
2820 ATTTTTGGAAGTTCGGGGGTAAAAATGGAATTTTTGGAAGTTTCGGAGTTAAAAATGAG
1 ATTTTTGGAAGTTCGGGGGTAAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGAG
* * * *
2879 ATTTTTGGAAGTTCGAGGGTAAAAAT-GAGATTTTTGAAAGTTTCGAGTTCAAAAATGAG
1 ATTTTTGGAAGTTCGGGGGTAAAAATGGA-ATTTTTGGAAGTTTCGGGGTCAAAAATGAG
* * * * *
2938 ATTTTTGGAAATTTGGGGGTAAAAATGGAATTTTT-----TTT---GATAAAAAATGGG
1 ATTTTTGGAAGTTCGGGGGTAAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGAG
*
2989 ATTTTTTGAAGTTCGGGGGTAAAAATGGAATTTTTGGA
1 ATTTTTGGAAGTTCGGGGGTAAAAATGGAATTTTTGGA
3027 CAATTTAGGG
Statistics
Matches: 181, Mismatches: 20, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
51 42 0.23
54 3 0.02
58 2 0.01
59 117 0.65
60 17 0.09
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.36
Consensus pattern (59 bp):
ATTTTTGGAAGTTCGGGGGTAAAAATGGAATTTTTGGAAGTTTCGGGGTCAAAAATGAG
Found at i:2973 original size:30 final size:29
Alignment explanation
Indices: 2662--3026 Score: 226
Period size: 29 Copynumber: 12.7 Consensus size: 29
2652 AATTCGAGGT
* *
2662 TAAAAATAGAATTTTTAGACA-TTTGGGGG
1 TAAAAATGGAATTTTTGGA-AGTTTGGGGG
* * *
2691 T-AAAAGGGTAA-TTTT-GAGAGTTTCGAGGT
1 TAAAAATGG-AATTTTTGGA-AGTTT-GGGGG
* * *
2720 TGAAAAATGGAGTTTTTGGACA-TTCGAGGG
1 T-AAAAATGGAATTTTTGGA-AGTTTGGGGG
* *
2750 T-AAAATGGTAATTTTTGGAAGTTTCGGTG
1 TAAAAATGG-AATTTTTGGAAGTTTGGGGG
*
2779 TCAAAAATGGAATTTTTGGAAGTTTTGGGGC
1 T-AAAAATGGAATTTTTGGAAG-TTTGGGGG
* *
2810 CAAAAAT-GAGATTTTTGGAAGTTCGGGGG
1 TAAAAATGGA-ATTTTTGGAAGTTTGGGGG
* *
2839 TAAAAATGGAATTTTTGGAAGTTTCGGAGT
1 TAAAAATGGAATTTTTGGAAGTTT-GGGGG
* *
2869 TAAAAAT-GAGATTTTTGGAAGTTCGAGGG
1 TAAAAATGGA-ATTTTTGGAAGTTTGGGGG
* * * *
2898 TAAAAAT-GAGATTTTTGAAAGTTTCGAGT
1 TAAAAATGGA-ATTTTTGGAAGTTTGGGGG
*
2927 TCAAAAAT-GAGATTTTTGGAAATTTGGGGG
1 T-AAAAATGGA-ATTTTTGGAAGTTTGGGGG
*
2957 TAAAAATGGAATTTTT-----TTT---GA
1 TAAAAATGGAATTTTTGGAAGTTTGGGGG
* * *
2978 TAAAAAATGGGATTTTTTGAAGTTCGGGGG
1 T-AAAAATGGAATTTTTGGAAGTTTGGGGG
3008 TAAAAATGGAATTTTTGGA
1 TAAAAATGGAATTTTTGGA
3027 CAATTTAGGG
Statistics
Matches: 263, Mismatches: 46, Indels: 54
0.72 0.13 0.15
Matches are distributed among these distances:
21 2 0.01
22 14 0.05
24 3 0.01
27 5 0.02
28 20 0.08
29 104 0.40
30 88 0.33
31 24 0.09
32 3 0.01
ACGTcount: A:0.33, C:0.04, G:0.28, T:0.35
Consensus pattern (29 bp):
TAAAAATGGAATTTTTGGAAGTTTGGGGG
Found at i:4815 original size:6 final size:6
Alignment explanation
Indices: 4785--4850 Score: 66
Period size: 6 Copynumber: 11.3 Consensus size: 6
4775 CTTTTTAATT
* *
4785 AATTTA AATTTT AATTTCA AA-TTA AATTTA AACTT- AATTTA AATTTA
1 AATTTA AATTTA AATTT-A AATTTA AATTTA AATTTA AATTTA AATTTA
* *
4832 AATTT- AGTTTA AACTTA AA
1 AATTTA AATTTA AATTTA AA
4851 CTAATTTAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
5 11 0.22
6 36 0.73
7 2 0.04
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (6 bp):
AATTTA
Found at i:4821 original size:23 final size:23
Alignment explanation
Indices: 4781--4837 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
4771 CCCCCTTTTT
*
4781 AATT-AATTTAAATTTTAATTTCA
1 AATTAAATTTAAATCTTAATTT-A
4804 AATTAAATTTAAA-CTTAATTTA
1 AATTAAATTTAAATCTTAATTTA
4826 AATTTAAATTTA
1 AA-TTAAATTTA
4838 GTTTAAACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 3 0.10
23 20 0.65
24 8 0.26
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
AATTAAATTTAAATCTTAATTTA
Found at i:4826 original size:17 final size:17
Alignment explanation
Indices: 4783--4860 Score: 86
Period size: 17 Copynumber: 4.6 Consensus size: 17
4773 CCCTTTTTAA
* *
4783 TTAATTTAAATTTTAAT
1 TTAATTTAAATTTAAAC
*
4800 TTCAAATTAAATTTAAAC
1 TT-AATTTAAATTTAAAC
*
4818 TTAATTTAAATTTAAAT
1 TTAATTTAAATTTAAAC
* *
4835 TTAGTTTAAACTTAAAC
1 TTAATTTAAATTTAAAC
4852 -TAATTTAAA
1 TTAATTTAAA
4861 CCCAAAATGA
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
16 8 0.16
17 29 0.57
18 14 0.27
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.47
Consensus pattern (17 bp):
TTAATTTAAATTTAAAC
Found at i:8016 original size:29 final size:29
Alignment explanation
Indices: 7963--8096 Score: 162
Period size: 29 Copynumber: 4.6 Consensus size: 29
7953 AGTGTCCTTG
7963 TTTTAATCCCTAAACTTTCCCAAAATCACA
1 TTTTAA-CCCTAAACTTTCCCAAAATCACA
* ** *
7993 TTTTGACCCTAAACTTTCTAAAAACCACA
1 TTTTAACCCTAAACTTTCCCAAAATCACA
8022 TTTTAACCCTAAAC-TTCCCAAAATCACA
1 TTTTAACCCTAAACTTTCCCAAAATCACA
* * * *
8050 TTTTAACCCCAAACTTTCCTAAAATTACTT
1 TTTTAACCCTAAACTTTCCCAAAATCAC-A
*
8080 TTTTACCCCTAAACTTT
1 TTTTAACCCTAAACTTT
8097 TCCTTAATTA
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
28 24 0.27
29 44 0.50
30 20 0.23
ACGTcount: A:0.35, C:0.29, G:0.01, T:0.35
Consensus pattern (29 bp):
TTTTAACCCTAAACTTTCCCAAAATCACA
Found at i:8045 original size:57 final size:60
Alignment explanation
Indices: 7963--8073 Score: 183
Period size: 57 Copynumber: 1.9 Consensus size: 60
7953 AGTGTCCTTG
* *
7963 TTTTAATCCCTAAACTTTCCCAAAATCACATTTTGACCCTAAACTTT-CTAAAAACCACA
1 TTTTAATCCCTAAACTTTCCCAAAATCACATTTTAACCCCAAACTTTCCTAAAAACCACA
8022 TTTTAA-CCCTAAAC-TTCCCAAAATCACATTTTAACCCCAAACTTTCCTAAAA
1 TTTTAATCCCTAAACTTTCCCAAAATCACATTTTAACCCCAAACTTTCCTAAAA
8074 TTACTTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
57 29 0.59
58 14 0.29
59 6 0.12
ACGTcount: A:0.38, C:0.30, G:0.01, T:0.32
Consensus pattern (60 bp):
TTTTAATCCCTAAACTTTCCCAAAATCACATTTTAACCCCAAACTTTCCTAAAAACCACA
Found at i:8106 original size:30 final size:29
Alignment explanation
Indices: 8036--8118 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 29
8026 AACCCTAAAC
* * *
8036 TTCCCAAAATCACATTTTAACCCCAAACT
1 TTCCTAAAATTACTTTTTAACCCCAAACT
*
8065 TTCCTAAAATTACTTTTTTACCCCTAAACTT
1 TTCCTAAAATTACTTTTTAACCCC-AAAC-T
*
8096 TTCCT-TAATTA-TGTTTTAACCCC
1 TTCCTAAAATTACT-TTTTAACCCC
8119 GAATTCTCCG
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 21 0.47
30 18 0.40
31 6 0.13
ACGTcount: A:0.30, C:0.29, G:0.01, T:0.40
Consensus pattern (29 bp):
TTCCTAAAATTACTTTTTAACCCCAAACT
Found at i:9698 original size:32 final size:32
Alignment explanation
Indices: 9657--9728 Score: 144
Period size: 32 Copynumber: 2.2 Consensus size: 32
9647 GACATTAATT
9657 ACTCTAAAATTAGGACAAACAGCCCATCAATC
1 ACTCTAAAATTAGGACAAACAGCCCATCAATC
9689 ACTCTAAAATTAGGACAAACAGCCCATCAATC
1 ACTCTAAAATTAGGACAAACAGCCCATCAATC
9721 ACTCTAAA
1 ACTCTAAA
9729 TAGAGGTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.44, C:0.28, G:0.08, T:0.19
Consensus pattern (32 bp):
ACTCTAAAATTAGGACAAACAGCCCATCAATC
Found at i:10048 original size:17 final size:17
Alignment explanation
Indices: 10011--10103 Score: 96
Period size: 17 Copynumber: 5.4 Consensus size: 17
10001 CCAAACTCCC
* *
10011 TTTAAATTTGTTTAAAAA
1 TTTAAATTTATTT-TAAA
*
10029 TTTGAATTTATTTTAAA
1 TTTAAATTTATTTTAAA
* * *
10046 TTTAAATTTGTCTTGAA
1 TTTAAATTTATTTTAAA
* *
10063 TTTAAATTTAATTTAAG
1 TTTAAATTTATTTTAAA
10080 TTTAAATTTATTTTCAAA
1 TTTAAATTTATTTT-AAA
10098 TTTAAA
1 TTTAAA
10104 AAAAATTATT
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
17 41 0.68
18 19 0.32
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (17 bp):
TTTAAATTTATTTTAAA
Found at i:10054 original size:23 final size:23
Alignment explanation
Indices: 10026--10073 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
10016 ATTTGTTTAA
* *
10026 AAATTTGAATTTATTTTAAATTT
1 AAATTTGAATTGAATTTAAATTT
**
10049 AAATTTGTCTTGAATTTAAATTT
1 AAATTTGAATTGAATTTAAATTT
10072 AA
1 AA
10074 TTTAAGTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (23 bp):
AAATTTGAATTGAATTTAAATTT
Found at i:10087 original size:23 final size:23
Alignment explanation
Indices: 10040--10089 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
10030 TTGAATTTAT
*
10040 TTTAAATTTAAATTTGTCTTGAA
1 TTTAAATTTAAATTTGTCTTAAA
10063 TTTAAATTT-AATTTAAGT-TTAAA
1 TTTAAATTTAAATTT--GTCTTAAA
10086 TTTA
1 TTTA
10090 TTTTCAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.21
23 17 0.71
24 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (23 bp):
TTTAAATTTAAATTTGTCTTAAA
Found at i:11423 original size:41 final size:42
Alignment explanation
Indices: 11366--11445 Score: 153
Period size: 41 Copynumber: 1.9 Consensus size: 42
11356 GAAAAGAGTT
11366 ATTTATAAGTCCTTAAAACGGCGTCGTTTTGA-GGCTGAAAC
1 ATTTATAAGTCCTTAAAACGGCGTCGTTTTGAGGGCTGAAAC
11407 ATTTATAAGTCCTTAAAACGGCGTCGTTTTGAGGGCTGA
1 ATTTATAAGTCCTTAAAACGGCGTCGTTTTGAGGGCTGA
11446 GTTTCAGCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
41 32 0.84
42 6 0.16
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (42 bp):
ATTTATAAGTCCTTAAAACGGCGTCGTTTTGAGGGCTGAAAC
Found at i:11963 original size:29 final size:28
Alignment explanation
Indices: 11930--12262 Score: 239
Period size: 29 Copynumber: 11.5 Consensus size: 28
11920 CTAAACTTTT
11930 CAAAAATTACCATTTTACCCCGAACTTC
1 CAAAAATTACCATTTTACCCCGAACTTC
* **
11958 CAAAAA-TCCCATTTTTGACCCTAAACCTTC
1 CAAAAATTACCA-TTTT-ACCCCGAA-CTTC
* *
11988 TAAAAATTACCATTTTACCCCCGAGCTTC
1 CAAAAATTACCATTTTA-CCCCGAACTTC
* * *
12017 CAAAAA-TCCCATTTTGACCACGAACCTC
1 CAAAAATTACCATTTT-ACCCCGAACTTC
* *
12045 CTGAAAATTACCATTTTACCCCCAAACTTC
1 C-AAAAATTACCATTTTA-CCCCGAACTTC
* *
12075 TAAAAA-T-CCAATTTTGACCTCGAACCTTC
1 CAAAAATTACC-ATTTT-ACCCCGAA-CTTC
*
12104 TAAAAATTACCATTTTACCCCCGAACTTC
1 CAAAAATTACCATTTTA-CCCCGAACTTC
* * * *
12133 CAAAGA-TCCCATTTTTTACCTCTAACCTTC
1 CAAAAATTACCA--TTTTACCCCGAA-CTTC
* * *
12163 AAAAAATTATCATTTTACCCCCAAACTTC
1 CAAAAATTACCATTTTA-CCCCGAACTTC
* *
12192 CAAAAA-TCCCATTTTTGACCCCGAACCTTT
1 CAAAAATTACCA-TTTT-ACCCCGAA-CTTC
*
12222 CAAAAATTATCATTTTACCCTCGAACTTC
1 CAAAAATTACCATTTTACCC-CGAACTTC
12251 CAAAAATT-CCAT
1 CAAAAATTACCAT
12263 ATTTGACTCC
Statistics
Matches: 237, Mismatches: 43, Indels: 50
0.72 0.13 0.15
Matches are distributed among these distances:
27 6 0.03
28 48 0.20
29 90 0.38
30 81 0.34
31 12 0.05
ACGTcount: A:0.34, C:0.31, G:0.04, T:0.30
Consensus pattern (28 bp):
CAAAAATTACCATTTTACCCCGAACTTC
Found at i:12183 original size:59 final size:59
Alignment explanation
Indices: 11931--12269 Score: 454
Period size: 59 Copynumber: 5.8 Consensus size: 59
11921 TAAACTTTTC
*
11931 AAAAATTACCATTTTA-CCCCGAACTTCCAAAAATCCCATTTTTGACC-CTAAACCTTCT
1 AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTC-GAACCTTCT
* * *
11989 AAAAATTACCATTTTACCCCCGAGCTTCCAAAAATCCCA-TTTTGACCACGAACCTCCT
1 AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCGAACCTTCT
* * * *
12047 GAAAATTACCATTTTACCCCCAAACTTCTAAAAAT-CCAATTTTGACCTCGAACCTTCT
1 AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCGAACCTTCT
* * * *
12105 AAAAATTACCATTTTACCCCCGAACTTCCAAAGATCCCATTTTTTACCTCTAACCTTCA
1 AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCGAACCTTCT
* * *
12164 AAAAATTATCATTTTACCCCCAAACTTCCAAAAATCCCATTTTTGACCCCGAACCTT-T
1 AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCGAACCTTCT
* * * *
12222 CAAAAATTATCATTTTACCCTCGAACTTCCAAAAATTCCATATTTGAC
1 -AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGAC
12270 TCCAAAACTA
Statistics
Matches: 248, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
57 3 0.01
58 110 0.44
59 135 0.54
ACGTcount: A:0.34, C:0.31, G:0.04, T:0.31
Consensus pattern (59 bp):
AAAAATTACCATTTTACCCCCGAACTTCCAAAAATCCCATTTTTGACCTCGAACCTTCT
Done.