genome.fa.s14724.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014724.1 Kokia drynarioides strain JFW-HI SEQ_129763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148167

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11632--11692	27	2.4	25	78	8	70	32	4	6	55	1.47
12631--12672	21	2.0	20	86	4	57	50	0	0	50	1.00
12626--12675	24	2.1	24	88	3	75	48	0	0	52	1.00
12952--13166	61	3.6	58	76	10	170	29	16	16	37	1.90
12944--13166	120	1.9	120	80	7	265	29	17	15	36	1.91
13035--13149	59	2.0	59	89	1	178	26	20	19	33	1.97
13186--13332	62	2.4	62	90	1	224	35	15	18	30	1.92
13236--13431	99	2.0	98	81	7	227	36	16	16	30	1.92
14702--14740	18	2.2	19	86	9	55	56	0	23	20	1.42
19665--19733	27	2.5	28	79	13	72	50	0	0	49	1.00
19674--19715	21	2.0	20	86	4	57	50	0	0	50	1.00
19669--19718	24	2.1	23	88	3	73	48	0	0	52	1.00
20766--20804	18	2.2	19	86	9	55	56	0	23	20	1.42
26266--26505	68	3.5	68	83	3	272	36	14	22	27	1.93
34695--34722	3	9.3	3	100	0	56	0	0	64	35	0.94
36765--36806	18	2.3	18	84	12	50	66	7	0	26	1.17
38393--38433	20	2.0	20	85	0	55	31	26	17	24	1.97
39321--39370	19	2.7	19	78	3	57	36	2	4	58	1.29
41111--41233	61	2.0	60	84	4	158	27	17	14	39	1.89
42530--42578	12	3.8	12	75	19	53	51	0	8	40	1.32
42682--43067	168	2.3	164	88	5	553	43	5	3	48	1.43
42682--43067	84	4.6	83	83	7	489	43	5	3	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42679--43067	162	2.3	161	87	6	546	42	5	3	48	1.42
43160--43218	22	2.7	23	78	7	77	40	30	6	22	1.79
44337--44417	30	2.7	30	86	3	101	28	7	2	61	1.36
44337--44440	30	3.5	29	84	5	84	27	7	2	61	1.38
45247--45488	62	4.0	61	81	6	228	38	14	17	29	1.89
45299--45488	62	3.1	62	82	7	239	38	13	18	28	1.89
45326--45640	167	1.9	164	84	5	420	38	14	15	31	1.88
45384--45590	106	1.9	108	85	7	289	39	14	15	30	1.87
45489--45640	61	2.5	59	80	12	159	35	15	15	33	1.89
45560--45828	93	2.9	92	85	7	355	39	10	14	35	1.81
45746--45949	62	3.4	61	89	4	290	37	14	15	32	1.88
45653--46053	215	1.9	217	87	3	594	38	11	15	34	1.83
45967--46168	107	1.9	108	81	8	250	36	9	18	36	1.83
45850--46330	263	1.8	263	88	4	738	36	11	17	34	1.86
46231--46352	62	2.0	62	85	6	167	40	13	16	29	1.86
50592--50639	17	2.8	18	75	18	57	45	12	10	31	1.76
50593--50661	34	2.0	34	86	5	95	44	13	7	34	1.71
50594--50659	17	3.9	17	75	11	55	43	13	7	34	1.73
51962--52070	55	2.0	55	85	0	146	34	27	14	22	1.94
53711--53771	18	3.4	18	79	4	61	44	19	8	27	1.79
53727--53772	18	2.6	18	85	0	65	45	21	6	26	1.76
56772--56837	11	6.2	11	74	11	57	51	1	1	45	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56789--56831	21	2.0	22	86	9	61	53	0	2	44	1.13
56755--56830	32	2.6	28	78	17	84	51	0	1	47	1.09
62515--62552	2	19.0	2	100	0	76	50	0	0	50	1.00
67679--67790	57	2.0	56	87	1	161	33	28	15	23	1.95
67683--67790	28	3.8	28	82	1	135	31	29	14	24	1.95
70430--70473	11	4.1	11	80	13	56	36	4	2	56	1.32
70430--70471	22	1.9	22	95	0	75	33	4	2	59	1.31
70464--70505	17	2.4	18	84	7	52	35	4	0	59	1.19
70464--70501	16	2.4	16	83	12	51	36	5	0	57	1.21
71375--71410	17	2.1	17	100	0	72	16	5	30	47	1.70
84802--84846	23	2.0	23	86	8	65	6	4	17	71	1.25
84803--84880	34	2.3	34	80	4	86	7	3	20	67	1.31
86021--86045	12	2.1	12	100	0	50	36	0	0	64	0.94
86321--86360	21	1.9	21	94	0	71	30	0	12	57	1.36
86742--86789	16	3.2	16	72	22	59	58	8	0	33	1.28
86822--86916	30	3.2	30	70	8	95	36	6	11	45	1.66
88106--88190	43	2.0	43	86	4	118	31	10	9	48	1.70
88661--88700	6	6.7	6	100	0	80	50	0	50	0	1.00
88655--88700	18	2.6	18	92	0	65	47	2	47	2	1.26
89074--89126	14	3.9	14	80	2	63	50	20	0	28	1.48
89075--89141	7	9.6	7	79	6	55	50	22	0	26	1.49
89104--89150	21	2.2	21	96	0	85	51	21	0	27	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91646--91691	24	1.9	24	95	0	83	17	17	21	43	1.88
93397--93434	20	1.9	20	94	0	67	39	2	7	50	1.46
103196--103265	24	3.1	23	76	23	78	48	1	4	45	1.30
103278--103327	25	2.0	25	84	0	64	46	2	0	52	1.12
103883--103931	13	3.8	13	78	10	55	32	0	18	48	1.48
103885--103944	26	2.3	25	81	13	68	35	0	18	46	1.49
104396--104484	31	2.9	31	79	3	108	48	10	8	32	1.68
104818--105001	92	2.0	92	100	0	368	41	10	11	35	1.77
107440--107732	79	3.7	79	88	0	424	31	23	19	25	1.98
107430--107732	158	1.9	158	89	0	471	31	24	19	25	1.98
112246--112282	18	2.0	19	89	5	58	32	8	2	56	1.43
123754--123844	28	2.9	30	82	12	96	34	15	27	23	1.94
127580--127628	20	2.5	20	96	0	89	44	16	20	18	1.86
132634--132667	6	5.8	6	93	3	52	55	0	44	0	0.99
132632--132671	18	2.3	17	82	4	53	60	0	40	0	0.97

Tables:   1

The End!