genome.fa.s14729.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014729.1 Kokia drynarioides strain JFW-HI SEQ_129768, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122304

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1626--1737	55	2.0	56	96	1	208	33	0	12	53	1.45
1695--1744	16	3.2	16	73	21	52	34	0	6	60	1.21
1642--1744	30	3.6	30	69	12	99	33	0	8	57	1.36
2674--2707	17	1.9	18	88	5	52	50	8	0	41	1.34
4600--4641	18	2.5	16	79	20	50	47	0	4	47	1.23
4921--4962	21	2.1	20	86	8	59	57	7	4	30	1.47
7816--7852	2	18.5	2	100	0	74	0	48	0	51	1.00
7852--7880	2	14.5	2	100	0	58	48	0	0	51	1.00
9781--9824	19	2.4	18	85	10	63	34	2	0	63	1.07
9854--9949	48	2.0	48	84	10	124	22	6	7	63	1.43
9885--9957	21	3.8	20	76	15	64	24	5	8	61	1.45
14301--14333	15	2.1	16	88	5	50	0	21	3	75	0.93
14819--14890	31	2.3	31	100	0	144	9	18	16	55	1.67
20695--21035	33	10.3	33	73	5	134	22	15	25	35	1.94
20717--20773	18	3.4	17	76	11	64	17	8	31	42	1.80
20714--21073	99	3.6	99	79	3	355	21	16	26	35	1.94
20731--21038	66	4.7	66	73	8	185	21	16	26	35	1.95
20995--21039	15	2.7	18	73	20	51	20	15	26	37	1.92
21139--21245	51	2.1	51	82	3	126	27	23	20	28	1.99
21159--21550	192	2.0	192	91	0	624	23	20	24	31	1.98
21347--21479	51	2.6	51	85	0	167	25	21	23	29	1.99
21445--21530	33	2.6	32	80	7	91	20	17	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23936--24419	33	14.7	33	70	6	185	22	15	26	35	1.94
23942--24183	99	2.4	99	78	4	236	21	14	26	37	1.92
24125--24372	81	3.0	81	83	4	300	21	17	26	34	1.96
24206--24246	18	2.3	18	91	0	64	24	12	29	34	1.91
23924--24419	165	3.0	166	76	10	460	22	15	26	35	1.94
24278--24327	15	3.1	16	80	8	57	20	12	32	36	1.89
24203--24342	48	2.9	48	77	3	127	22	17	27	31	1.97
24506--24663	18	9.3	18	68	14	70	24	22	24	28	1.99
24503--24696	33	5.8	33	74	10	135	24	21	24	29	1.99
24479--24663	102	1.8	102	95	2	336	24	23	23	28	1.99
24452--24651	51	3.9	51	82	2	258	26	23	22	28	1.99
31553--31579	3	9.0	3	100	0	54	33	0	0	66	0.92
34106--34210	52	2.0	52	96	0	192	28	10	15	45	1.79
41567--41596	13	2.4	13	94	5	53	50	10	0	40	1.36
51826--52001	86	2.0	86	83	4	221	31	27	16	25	1.96
51826--52001	43	4.1	43	82	4	187	31	27	16	25	1.96
51826--52047	86	2.6	86	80	5	209	30	25	16	27	1.96
53964--54269	123	2.5	122	85	5	395	24	27	15	32	1.95
53933--54237	41	7.4	41	86	1	380	23	27	16	32	1.96
55731--55877	41	3.8	41	75	18	152	21	29	17	31	1.96
55767--55832	32	2.1	32	97	0	123	22	30	15	31	1.95
55880--55985	40	2.7	40	83	0	140	18	17	18	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56886--56923	20	1.9	20	94	0	67	47	7	10	34	1.67
61475--61541	31	2.2	30	79	12	73	28	19	17	34	1.95
61652--61784	65	2.0	65	80	0	149	49	13	12	24	1.76
62009--62065	23	2.5	20	75	22	51	54	1	0	43	1.10
63167--63243	29	2.7	28	80	11	86	31	1	32	35	1.66
63283--63419	29	4.6	30	75	16	108	35	2	27	34	1.69
63287--63410	31	4.1	31	76	13	114	37	1	27	33	1.67
63908--63960	28	1.9	27	88	3	79	45	0	5	49	1.26
63989--64014	3	8.7	3	100	0	52	30	0	0	69	0.89
64543--64610	15	4.5	15	80	7	84	20	17	26	35	1.95
64644--64697	23	2.3	23	78	12	58	51	1	0	46	1.11
64648--64704	17	3.4	17	90	0	87	54	1	0	43	1.10
64966--65600	206	3.1	202	86	6	823	22	22	19	35	1.96
71948--72004	28	2.0	28	89	0	87	33	26	21	19	1.97
73183--73236	27	2.0	27	85	0	72	25	29	25	18	1.98
73444--73477	17	2.0	17	88	0	50	41	0	5	52	1.25
76493--76568	26	2.8	26	78	4	71	56	10	1	31	1.41
79305--79355	26	2.0	26	92	0	84	17	23	3	54	1.59
79779--79842	32	2.0	31	85	8	85	23	0	9	67	1.20
79889--79955	27	2.5	27	83	9	91	13	28	32	25	1.93
79889--79966	27	2.9	27	78	3	86	16	26	32	24	1.96
82330--82396	31	2.2	31	83	0	80	25	20	19	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87190--87246	28	2.0	28	89	0	87	33	26	21	19	1.97
88425--88478	27	2.0	27	85	0	72	25	29	25	18	1.98
88686--88719	17	2.0	17	88	0	50	41	0	5	52	1.25
91735--91810	26	2.8	26	78	4	71	56	10	1	31	1.41
94547--94597	26	2.0	26	92	0	84	17	23	3	54	1.59
95021--95084	32	2.0	31	85	8	85	23	0	9	67	1.20
95131--95197	27	2.5	27	83	9	91	13	28	32	25	1.93
95131--95208	27	2.9	27	78	3	86	16	26	32	24	1.96
97572--97638	31	2.2	31	83	0	80	25	20	19	34	1.96
105000--105054	27	2.1	27	83	10	69	52	1	1	43	1.22
111290--111348	31	1.9	30	82	3	73	45	0	32	22	1.52
111321--111368	22	2.1	23	84	3	62	50	0	25	25	1.50
115173--115253	29	2.7	30	84	7	112	39	8	14	37	1.77
116242--116321	30	2.7	30	76	5	81	48	13	5	32	1.64
120927--120991	30	2.2	30	91	0	103	55	16	7	20	1.65

Tables:   1

The End!