Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014731.1 Kokia drynarioides strain JFW-HI SEQ_129770, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4522
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.34
Warning! 50 characters in sequence are not A, C, G, or T
Found at i:470 original size:23 final size:23
Alignment explanation
Indices: 444--487 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
434 TTTCATTTTT
*
444 TTTAATAATA-TTATTATTATTTA
1 TTTAA-AATATTTATTACTATTTA
467 TTTAAAATATTTATTACTATT
1 TTTAAAATATTTATTACTATT
488 AATAATATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTAAAATATTTATTACTATTTA
Found at i:1178 original size:17 final size:17
Alignment explanation
Indices: 1158--1190 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1148 CCGTTTCAAA
*
1158 TTTAAACTAAATTTAAC
1 TTTAAAATAAATTTAAC
1175 TTTAAAATAAATTTAA
1 TTTAAAATAAATTTAA
1191 AACCAATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (17 bp):
TTTAAAATAAATTTAAC
Found at i:1186 original size:28 final size:27
Alignment explanation
Indices: 1155--1219 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
1145 AAACCGTTTC
1155 AAATTTAAACTAAATTT-AACTTTAAAAT
1 AAATTTAAAC-AAATTTAAAC-TTAAAAT
* *
1183 AAATTTAAAACCAATTTAAACTTAATAT
1 AAATTT-AAACAAATTTAAACTTAAAAT
1211 AAATTTAAA
1 AAATTTAAA
1220 ATCAAAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 3 0.09
28 23 0.70
29 7 0.21
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (27 bp):
AAATTTAAACAAATTTAAACTTAAAAT
Found at i:1220 original size:28 final size:28
Alignment explanation
Indices: 1167--1220 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
1157 ATTTAAACTA
1167 AATTTAACTTTAAAATAAATTTAAAACC
1 AATTTAACTTTAAAATAAATTTAAAACC
*
1195 AATTTAAAC-TTAATATAAATTTAAAA
1 AATTT-AACTTTAAAATAAATTTAAAA
1221 TCAAAAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 21 0.88
29 3 0.12
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (28 bp):
AATTTAACTTTAAAATAAATTTAAAACC
Found at i:2560 original size:78 final size:78
Alignment explanation
Indices: 2457--3592 Score: 819
Period size: 78 Copynumber: 14.7 Consensus size: 78
2447 TCCCATGATC
* * * * *
2457 GGGTGAGAGATTGGCTGATAATGATCTGTCTCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
* *
2522 TGCCCCAAGCTCC
66 TGCCCCAGGCTCG
* ** * * * ** *
2535 GGGTAAGAGATTGACTGATGGTGATCTG-CCTTAGCCTTGAGGTACGAGATTGAATGGTTACAAT
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAG-CTCGAGGTAAGAGATCGAATGACTGCAAT
* *
2599 CTACCCTAGGCTCG
65 CTGCCCCAGGCTCG
* * * * *
2613 GGGTAAGAGATTTG-CTGATGATGATCTGCCACAAGCTTGGGGTAAGAGATCGAATGATTACAAT
1 GGGTAAGAGA-TTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAAT
2677 CTGCCCCAGGCTCG
65 CTGCCCCAGGCTCG
* ** * * * * * *
2691 AGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTTGGGGTAAAAGATCGAACGACTACAATC
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
* *
2756 TACCCCAGGCTCA
66 TGCCCCAGGCTCG
* * * * * *
2769 GGGTAAGAGATTGGCTGATGATGATCTACCCTAGGCTCGAGGTAAGAGATTGAACCG-CTGCAAT
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAA-TGACTGCAAT
2833 CTGCCCCAGGCTCG
65 CTGCCCCAGGCTCG
* * * * ** **
2847 AGGTAAGAGATTGGA-TGATAATGATCTGCCCCAGGCTC-AGGGTAAGAGATTGGCTGA-TGGTG
1 GGGTAAGAGATT-GACTGATGATGATCTGCCCCAAGCTCGA-GGTAAGAGATCGAATGACT-GCA
*
2909 ATCTGCCTCAGGCTCG
63 ATCTGCCCCAGGCTCG
* * * * * * * * * *
2925 GGGTAAGAGATCGAATG--GCTGCAATCTACCCCAGGCTTGGGGTAAGAGATTTG-CTGA-TGGT
1 GGGTAAGAGATTGACTGATGATG--ATCTGCCCCAAGCTCGAGGTAAGAGA-TCGAATGACT-GC
* * * *
2986 GATCTACCCTAGGCTCA
62 AATCTGCCCCAGGCTCG
* * * * * *
3003 AGGTAAGAGATTTACTGATGGTGATCTGCCCTAGGCTC-AGGGTAAGAGATCAAATGACTGCAAT
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGA-GGTAAGAGATCGAATGACTGCAAT
* * *
3067 CTGCCCTAGACTCA
65 CTGCCCCAGGCTCG
* * * * *
3081 GGGTAAGAGATTGACTGATGGTGATCTGCCCCAATCTTGGGGTAAGAGATCGAATGGCTGCAATC
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
* *
3146 TACCCCAAGCTCG
66 TGCCCCAGGCTCG
* * * * * *
3159 GGGTAAGAGATTTACTGATGATGATCTTCCCCAGGTTCGAGGTAAGAGATCGAATGGCTGTAATC
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
*
3224 TG-CCCAGACTCG
66 TGCCCCAGGCTCG
* * * * *
3236 GGGTAAGAGATTTG-CTAATGATGATCTG-CCCTAGCCTAGGGGTAAGAGATCGAATGGCTGCAA
1 GGGTAAGAGA-TTGACTGATGATGATCTGCCCCAAG-CTCGAGGTAAGAGATCGAATGACTGCAA
* * *
3299 TCTACCCTAGGCTCT
64 TCTGCCCCAGGCTCG
* * * * *
3314 GGGTAAGAGATTTG-CTGATGATGATCTTCCCTAGGGTCG-GTGTAAGAGATCGAATGGCTGCAA
1 GGGTAAGAGA-TTGACTGATGATGATCTGCCCCAAGCTCGAG-GTAAGAGATCGAATGACTGCAA
* *
3377 TCTGCTCCAGGCTTG
64 TCTGCCCCAGGCTCG
* * * * * * * *
3392 GGGTAAGAGATTTG-TTGATGATGATCTACCCCAGGCTAGGGGTAAGAGATCGGATGGCTACAAT
1 GGGTAAGAGA-TTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAAT
*
3456 TTGCCCTC-GGCTC-
65 CTGCCC-CAGGCTCG
* * * ** * * * * *
3469 --G--AG-GTTTG-TTGGTTTTGATCTACCCCAAGCTCGAGGTAAGAGATCTAATGGCTACAATT
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
* *
3528 TGCCCTAGGCTTG
66 TGCCCCAGGCTCG
** *
3541 GGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCG
1 GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCG
3593 GTATCTTCAA
Statistics
Matches: 857, Mismatches: 166, Indels: 70
0.78 0.15 0.06
Matches are distributed among these distances:
71 55 0.06
72 1 0.00
73 2 0.00
74 1 0.00
75 1 0.00
76 8 0.01
77 74 0.09
78 694 0.81
79 18 0.02
80 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (78 bp):
GGGTAAGAGATTGACTGATGATGATCTGCCCCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
TGCCCCAGGCTCG
Found at i:2562 original size:39 final size:39
Alignment explanation
Indices: 2519--3441 Score: 367
Period size: 39 Copynumber: 23.7 Consensus size: 39
2509 AATGACTGCA
*
2519 ATCTGCCCCAAGCTCCGGGTAAGAGATTGACTGATGGTG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
** * * * * * ****
2558 ATCTGCCTTAGCCT-TGAGGTACGAGATTGAATGGTTACA
1 ATCTGCCCCAGGCTCCG-GGTAAGAGATTGACTGATGGTG
* * * *
2597 ATCTACCCTAGGCTCGGGGTAAGAGATTTG-CTGATGATG
1 ATCTGCCCCAGGCTCCGGGTAAGAGA-TTGACTGATGGTG
* * ** * * ****
2636 ATCTGCCACAAGCTTGGGGTAAGAGATCGAATGATTACA
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
**
2675 ATCTGCCCCAGGCT-CGAGGTAAGAGATTGGTTGATGGTG
1 ATCTGCCCCAGGCTCCG-GGTAAGAGATTGACTGATGGTG
* ** * * ***
2714 ATCTGCCCCAAGCTTGGGGTAAAAGATCGAAC-GACT-ACA
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTG-ACTGA-TGGTG
* * * *
2753 ATCTACCCCAGGCTCAGGGTAAGAGATTGGCTGATGATG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
* * * * **
2792 ATCTACCCTAGGCT-CGAGGTAAGAGATTGAACCGCT-GCA
1 ATCTGCCCCAGGCTCCG-GGTAAGAGATTG-ACTGATGGTG
**
2831 ATCTGCCCCAGGCT-CGAGGTAAGAGATTGGA-TGATAATG
1 ATCTGCCCCAGGCTCCG-GGTAAGAGATT-GACTGATGGTG
* *
2870 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
* * *
2909 ATCTGCCTCAGGCTCGGGGTAAGAGATCGA---ATGGCTG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGG-TG
* **
2946 CAATCTACCCCAGGCTTGGGGTAAGAGATTTG-CTGATGGTG
1 --ATCTGCCCCAGGCTCCGGGTAAGAGA-TTGACTGATGGTG
* * ** *
2987 ATCTACCCTAGGCTCAAGGTAAGAGATTTACTGATGGTG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
* * ** * **
3026 ATCTGCCCTAGGCTCAGGGTAAGAGATCAAATGACT-GCA
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGA-TGGTG
* * *
3065 ATCTGCCCTAGACTCAGGGTAAGAGATTGACTGATGGTG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
** ** *
3104 ATCTGCCCCAATCTTGGGGTAAGAGATCGA---ATGGCTG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGG-TG
* * * * *
3141 CAATCTACCCCAAGCTCGGGGTAAGAGATTTACTGATGATG
1 --ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
* * * * * *
3182 ATCTTCCCCAGG-TTCGAGGTAAGAGATCGAATGGCT-GTA
1 ATCTGCCCCAGGCTCCG-GGTAAGAGATTGACT-GATGGTG
* * * *
3221 ATCTG-CCCAGACTCGGGGTAAGAGATTTG-CTAATGATG
1 ATCTGCCCCAGGCTCCGGGTAAGAGA-TTGACTGATGGTG
* * ** *
3259 ATCTGCCCTAGCCTAGGGGTAAGAGATCGA---ATGGCTG
1 ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGG-TG
* * * *
3296 CAATCTACCCTAGGCTCTGGGTAAGAGATTTG-CTGATGATG
1 --ATCTGCCCCAGGCTCCGGGTAAGAGA-TTGACTGATGGTG
* * * *
3337 ATCTTCCCTAGGGT-CGGTGTAAGAGATCGA---ATGGCTG
1 ATCTGCCCCAGGCTCCGG-GTAAGAGATTGACTGATGG-TG
* ** * *
3374 CAATCTGCTCCAGGCTTGGGGTAAGAGATTTG-TTGATGATG
1 --ATCTGCCCCAGGCTCCGGGTAAGAGA-TTGACTGATGGTG
* **
3415 ATCTACCCCAGGCTAGGGGTAAGAGAT
1 ATCTGCCCCAGGCTCCGGGTAAGAGAT
3442 CGGATGGCTA
Statistics
Matches: 665, Mismatches: 163, Indels: 113
0.71 0.17 0.12
Matches are distributed among these distances:
36 14 0.02
37 9 0.01
38 43 0.06
39 556 0.84
40 22 0.03
41 8 0.01
42 13 0.02
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
ATCTGCCCCAGGCTCCGGGTAAGAGATTGACTGATGGTG
Found at i:2694 original size:117 final size:116
Alignment explanation
Indices: 2519--3441 Score: 498
Period size: 117 Copynumber: 7.9 Consensus size: 116
2509 AATGACTGCA
* * * * * * ** * * *
2519 ATCTGCCCCAAGCTCCGGGTAAGAGATTGACTGATGGTGATCTGCCTTAGCCTTGAGGTACGAGA
1 ATCTG-CCCAGGCTCGGGGTAAGAGATCGAATGATTGCGATCTGCCCCAGGCTCGAGGTAAGAGA
* * *
2584 TTGAATGGTTACAATCTACCCTAGGCTCGGGGTAAGAGATTTGCTGATGATG
65 TTGAATGGCTGCAATCTACCCCAGGCTCGGGGTAAGAGATTTGCTGATGATG
* * * *
2636 ATCTGCCACAAGCTTGGGGTAAGAGATCGAATGATTACAATCTGCCCCAGGCTCGAGGTAAGAGA
1 ATCTGCC-CAGGCTCGGGGTAAGAGATCGAATGATTGCGATCTGCCCCAGGCTCGAGGTAAGAGA
* * * * * * **
2701 TTGGTTGATGG-TG--ATCTGCCCCAAGCTTGGGGTAAAAGA-TCGAAC-GACT-ACA
65 TT-G--AATGGCTGCAATCTACCCCAGGCTCGGGGTAAGAGATTTG--CTGA-TGATG
* * * ** * * *
2753 ATCTACCCCAGGCTCAGGGTAAGAGATTGGCTGA-TGATGATCTACCCTAGGCTCGAGGTAAGAG
1 ATCT-GCCCAGGCTCGGGGTAAGAGATCGAATGATTG-CGATCTGCCCCAGGCTCGAGGTAAGAG
** * * * * *
2817 ATTGAACCGCTGCAATCTGCCCCAGGCTCGAGGTAAGAGATTGGATGATAATG
64 ATTGAATGGCTGCAATCTACCCCAGGCTCGGGGTAAGAGATTTGCTGATGATG
* * ** * * * *
2870 ATCTGCCCCAGGCTCAGGGTAAGAGATTGGCTGATGGTGATCTGCCTCAGGCTCGGGGTAAGAGA
1 ATCTG-CCCAGGCTCGGGGTAAGAGATCGAATGATTGCGATCTGCCCCAGGCTCGAGGTAAGAGA
* * *
2935 TCGAATGGCTGCAATCTACCCCAGGCTTGGGGTAAGAGATTTGCTGATGGTG
65 TTGAATGGCTGCAATCTACCCCAGGCTCGGGGTAAGAGATTTGCTGATGATG
* ** ** * * * *
2987 ATCTACCCTAGGCTCAAGGTAAGAGATTTACTGATGGTGATCTGCCCTAGGCTC-AGGGTAAGAG
1 ATCTGCCC-AGGCTCGGGGTAAGAGATCGAATGATTGCGATCTGCCCCAGGCTCGA-GGTAAGAG
** * * * * * *
3051 ATCAAATGACTGCAATCTGCCCTAGACTCAGGGTAAGAGA-TTGACTGATGGTG
64 ATTGAATGGCTGCAATCTACCCCAGGCTCGGGGTAAGAGATTTG-CTGATGATG
** * ** * * * *
3104 ATCTGCCCCAATCTTGGGGTAAGAGATCGAATGGCTGCAATCTACCCCAAGCTCGGGGTAAGAGA
1 ATCTG-CCCAGGCTCGGGGTAAGAGATCGAATGATTGCGATCTGCCCCAGGCTCGAGGTAAGAGA
* * * * * * * * * *
3169 TTTACT-GATG-ATGATCTTCCCCAGGTTCGAGGTAAGAGA-TCGAATGGCTG-TA
65 TTGAATGGCTGCA--ATCTACCCCAGGCTCGGGGTAAGAGATTTG-CT-GATGATG
* * * * * *
3221 ATCTGCCCAGACTCGGGGTAAGAGATTTGCTAATGA-T--GATCTGCCCTAGCCTAGGGGTAAGA
1 ATCTGCCCAGGCTCGGGGTAAGAGA--T-CGAATGATTGCGATCTGCCCCAGGCTCGAGGTAAGA
* * *
3283 GATCGAATGGCTGCAATCTACCCTAGGCTCTGGGTAAGAGATTTGCTGATGATG
63 GATTGAATGGCTGCAATCTACCCCAGGCTCGGGGTAAGAGATTTGCTGATGATG
* * * ** * * * *
3337 ATCTTCCCTAGGGTCGGTGTAAGAGATCGAATGGCTGCAATCTGCTCCAGGCTTGGGGTAAGAGA
1 ATCTGCCC-AGGCTCGGGGTAAGAGATCGAATGATTGCGATCTGCCCCAGGCTCGAGGTAAGAGA
* * *
3402 TTTG--TTGATG-ATGATCTACCCCAGGCTAGGGGTAAGAGAT
65 -TTGAATGGCTGCA--ATCTACCCCAGGCTCGGGGTAAGAGAT
3442 CGGATGGCTA
Statistics
Matches: 617, Mismatches: 150, Indels: 78
0.73 0.18 0.09
Matches are distributed among these distances:
114 7 0.01
115 9 0.01
116 90 0.15
117 482 0.78
118 19 0.03
119 6 0.01
120 4 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (116 bp):
ATCTGCCCAGGCTCGGGGTAAGAGATCGAATGATTGCGATCTGCCCCAGGCTCGAGGTAAGAGAT
TGAATGGCTGCAATCTACCCCAGGCTCGGGGTAAGAGATTTGCTGATGATG
Found at i:2753 original size:156 final size:156
Alignment explanation
Indices: 2457--3592 Score: 913
Period size: 156 Copynumber: 7.3 Consensus size: 156
2447 TCCCATGATC
* * * * * *
2457 GGGTGAGAGATTGGCTGATAATGATCTGTCTCAAGCTCGAGGTAAGAGATCGAATGACTGCAATC
1 GGGTAAGAGATTTGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGACTGCAATC
* * * ** * * *
2522 TGCCCCAAGCTCCG-GGTAAGAGATTGACTGATGGTGATCTG-CCTTAGCCTTGAGGTACGAGAT
66 TGCCCCAGGCT-CGAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAG-CTCGGGGTAAGAGAT
* * * *
2585 TGAATGGTTACAATCTACCCTAGGCTCG
129 CGAATGGCTGCAATCTGCCCTAGGCTCG
* * * *
2613 GGGTAAGAGATTTGCTGATGATGATCTGCCACAAGCTTGGGGTAAGAGATCGAATGATTACAATC
1 GGGTAAGAGATTTGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGACTGCAATC
* * * *
2678 TGCCCCAGGCTCGAGGTAAGAGATTGGTTGATGGTGATCTGCCCCAAGCTTGGGGTAAAAGATCG
66 TGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCG
* * * * * *
2743 AACGACTACAATCTACCCCAGGCTCA
131 AATGGCTGCAATCTGCCCTAGGCTCG
* * * * * * *
2769 GGGTAAGAGATTGGCTGATGATGATCTACCCTAGGCTCGAGGTAAGAGATTGAACCG-CTGCAAT
1 GGGTAAGAGATTTGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCGAA-TGACTGCAAT
* * * *
2833 CTGCCCCAGGCTCGAGGTAAGAGATTGGATGATAATGATCTGCCCCAGGCTCAGGGTAAGAGATT
65 CTGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGA-T
2898 GGCTG-ATGG-TG--ATCTG-CCTCAGGCTCG
129 --C-GAATGGCTGCAATCTGCCCT-AGGCTCG
* * * * * *
2925 GGGTAAGAGA--T-C-GAATGGCTGCAATCTACCCCAGGCTTGGGGTAAGAGATTTG-CTGA-TG
1 GGGTAAGAGATTTGCTG-AT-GATG--ATCTGCCCCAAGCTCGGGGTAAGAGA-TCGAATGACT-
** * * * ** * * * *
2984 GTGATCTACCCTAGGCTCAAGGTAAGAGATTTACTGATGGTGATCTGCCCTAGGCTCAGGGTAAG
60 GCAATCTGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAG
* * * *
3049 AGATCAAATGACTGCAATCTGCCCTAGACTCA
125 AGATCGAATGGCTGCAATCTGCCCTAGGCTCG
* * * *
3081 GGGTAAGAGA-TTGACTGATGGTGATCTGCCCCAATCTTGGGGTAAGAGATCGAATGGCTGCAAT
1 GGGTAAGAGATTTG-CTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGACTGCAAT
* * * ** * * * *
3145 CTACCCCAAGCTCGGGGTAAGAGATTTACTGATGATGATCTTCCCCAGGTTCGAGGTAAGAGATC
65 CTGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATC
* *
3210 GAATGGCTGTAATCTGCCC-AGACTCG
130 GAATGGCTGCAATCTGCCCTAGGCTCG
* * * *
3236 GGGTAAGAGATTTGCTAATGATGATCTG-CCCTAGCCTAGGGGTAAGAGATCGAATGGCTGCAAT
1 GGGTAAGAGATTTGCTGATGATGATCTGCCCCAAG-CTCGGGGTAAGAGATCGAATGACTGCAAT
* * * * * * * *
3300 CTACCCTAGGCTCTG-GGTAAGAGATTTGCTGATGATGATCTTCCCTAGGGTCGGTGTAAGAGAT
65 CTGCCCCAGGCTC-GAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGAT
*
3364 CGAATGGCTGCAATCTGCTCC-AGGCTTG
129 CGAATGGCTGCAATCTGC-CCTAGGCTCG
* * * * * * * *
3392 GGGTAAGAGATTTGTTGATGATGATCTACCCCAGGCTAGGGGTAAGAGATCGGATGGCTACAATT
1 GGGTAAGAGATTTGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGACTGCAATC
** * * *
3457 TGCCCTC-GGCTCGAGGT--TTG-TTGG-T--T-TTGATCTACCCCAAGCTCGAGGTAAGAGATC
66 TGCCC-CAGGCTCGAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATC
* * * *
3514 TAATGGCTACAATTTGCCCTAGGCTTG
130 GAATGGCTGCAATCTGCCCTAGGCTCG
* *
3541 GGGTAAGAGATTGGTTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCG
1 GGGTAAGAGATTTGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCG
3593 GTATCTTCAA
Statistics
Matches: 812, Mismatches: 134, Indels: 75
0.80 0.13 0.07
Matches are distributed among these distances:
148 2 0.00
149 93 0.11
150 1 0.00
152 2 0.00
153 10 0.01
154 10 0.01
155 138 0.17
156 526 0.65
157 18 0.02
158 4 0.00
159 6 0.01
160 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (156 bp):
GGGTAAGAGATTTGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCGAATGACTGCAATC
TGCCCCAGGCTCGAGGTAAGAGATTGGCTGATGATGATCTGCCCCAAGCTCGGGGTAAGAGATCG
AATGGCTGCAATCTGCCCTAGGCTCG
Done.