Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014741.1 Kokia drynarioides strain JFW-HI SEQ_129780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 60951
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Warning! 4 characters in sequence are not A, C, G, or T
Found at i:1939 original size:216 final size:215
Alignment explanation
Indices: 1--10447 Score: 9039
Period size: 216 Copynumber: 47.9 Consensus size: 215
* * * **
1 GACAAACTATTTAGTCCAAGTGATGCAATTTCTCGAGCATGGAATGTTCTCAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * ** ** **
66 AAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAATAGAAAGAGTAAAAGTTTTCCTCG
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * **
131 TTCGAAAGTTCGTCCAAGAACCAGGA-AGAAACAATT-TACACATAAATAAGTATTTAATTCAGG
130 TTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAA
*
194 GACCAAAAGTTTTTTTA-AGAAAT
194 GACCAAAAG-TTGTTTACA-AAAT
* * * **
217 GGCAAACTACTTT-GACCGAATGATGCGATTTC-CAAAGCATGGAATGTTCGGAATCTTGCTCGA
1 GACAAACTA-TTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGA
* * ** ** * *
280 AGGATTGGATCATCTTTTATAGATTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTG
64 AGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTG
* ** * *
345 ACAAGTTCAGAAGTTTATCTAAGAATCAAAAGAG-AACTAATTCTCACATAAATATA-TTTTTAA
125 ACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAAC-AATTCTCACATAAATA-AGTTTTTAA
* *
408 TTCAAACACCAAAAAGTTGTTTGCAAAAT
188 TTCAAAGACC-AAAAGTTGTTTACAAAAT
* * * * *
437 GACAAACTATTTAGACCTAATGATGCTG-TTTCCCGAGCATGGAATGTTCAGAATATTGATCGAA
1 GACAAACTATTTAGACCAAATGATGC-GATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAA
* * *
501 GGAATGCATCGTCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTTGTAAAAAGCTTGAC
65 GGAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGT-AAAAGTTTGAC
* * * * * *
565 TAGTTCAGAAGTTTGTTTGAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGCTTTTAGTTT
127 AAGTTCGGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAG---TT--TTT
** * * *
629 GAAGACCAAGACCAAAACTTGGTTTTCAAAAT
186 -AATTCAAAGACCAAAAGTT-GTTTACAAAAT
* * * *
661 GACAAACTATTTAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTA-
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * ** *
725 GAA-GCGATGGTCATGAATACTTTAAGGAACCGAAGTTATAATAGAAATAGTAAAAGTTTTCCTA
66 GAATG-GATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * * * *
789 GTTCGAAAGTTTGTCCAAGAACCAGGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAG
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * * **
853 TGACCGAAAGTTTTTTTGAGAAAT
193 AGACCAAAAGTTGTTTACA-AAAT
* * * *
877 -AGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGGAATATTGCTCGAA
1 GA-CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * * *
941 GGATTGGATCATCTTGAATACTTTATGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGA
65 GGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGA
* * * * * * * *
1006 CACGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACAAAAATATA-TTTTT-ACT
126 CAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATT
*
1069 CAAAGACCAAAAAGTTGTTTGCAAAAT
190 CAAAGACC-AAAAGTTGTTTACAAAAT
* * * * * *
1096 GACAAAGTATTTAGACCCAATGATGCTATTTCTCGAGCATGGAATGTTCAGAATATTGATCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * **
1161 GAATGGATTGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAACTTGA-AT
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA-
** * *
1225 AGTTCAAAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA-ATT--
* * *
1290 AGACCAAGACCAAAACTTGGTTTTCAAAAT
190 ---CAAAGACCAAAAGTT-GTTTACAAAAT
***** * * *
1320 GACAAACTATTTAGACCAAAANNNNCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * * *
1385 AAACGGATGGTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAATGATTT-ACGA
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAG-TTTGACAA
* * * * * * * * *
1449 GTTCGGTAGTTAGTCCAAGAAGCAAGAGAGAGATAATTGTCACTTAAATAAGTTTTAAATTCAAA
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC-AA
*
1514 AGACCAAAAGTTGTTTACACAAT
193 AGACCAAAAGTTGTTTACAAAAT
* * * *
1537 GACAAACTATTTAAACCAAAAGACT-CGATTTC-CGGAGAATGGAATGTT-TGAAAATTGCTCGA
1 GACAAACTATTTAGACCAAATGA-TGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGA
** * * * * * *
1599 TTGAGTTGATCGTTTACATAT-AATACAATTCATGGAACCGAAGTTTTAAAAGAACTTGTAAAAG
64 AGGAATGGATCG----C-T-TGAATAC--TTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAG
* * * * * * *
1663 TTTGACAAGTCCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCCCACGTCAATAAGTTTTT
121 TTTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
*
1728 AATTCAAAGACCAAAGGTTGTTTACAAAAT
186 AATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * * * ** *
1758 GAAAAACTATTTAGATCAAATGATGCGATTTTTCGAACATTGAATGTTCTAAAAATTTG-TAGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAA-TTGCTCGAA
* * * * * * * *
1822 GGAATGGATCGCATAGAATGCTTTAAGGAGCCTAAGCTGTAAAAGAACTCGTAAAATTTTGACAA
65 GGAATGGATCGC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * * * *
1887 -CTCTGGAAGTTCATCCAAGAACTAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
129 GTTC-GGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
* *
1951 AGACCAAAAGTTATTTACAGAAT
193 AGACCAAAAGTTGTTTACAAAAT
* * * * * * * * *
1974 GAAAAAATATTTAGATCGAATGATGCGCTTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * *
2039 GAATGGATCGCCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAAA
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * * *
2103 GTTCAGAAGTTCATCTAAGAA-CTAGTTGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAA
129 GTTCGGAAGTTCGTCTAAGAACCAAG-AGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
2166 AGACCAAAAGTTGTTTACAAAAT
193 AGACCAAAAGTTGTTTACAAAAT
* **
2189 GACAAACTATTTAGACCAAGTGATGC-AGTTTCTCGAGCATGGAATGTTCTCAAAATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGA-TTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAA
** * * * ** ** **
2253 TAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAATAGAAAGAGTAAAAGTTTTCCTC
65 GGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * * *
2318 GTTCGAAAGTTCGTCCAAGAACCAGGA-AGAAACAATT-TACACATAAATAAGTATTTAATTCAG
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * *
2381 TGACCAAAAGTTTTTTTACGAAAT
193 AGACCAAAAG-TTGTTTACAAAAT
* * * * * *
2405 GGCAAACTATTTTGATCGAATGATGCGATTTC-CAGAGCACGGAATGTTCGGAATATTGCTCGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * * * * *
2469 GGATTGGATCATCTTGAATAGTTTAATGAACCGAAGTAATTGTAAAAGAAATAGTAAAAGCTTGA
65 GGAATGGATC-GCTTGAATACTTTAAGGAACCGAAG---TTATAAAAGAACTAGTAAAAGTTTGA
* * * * * * *
2534 CAAGTTCAGAAATTTGTCTAAGAATCAAAAGAGAAATAATTATCACATAAATATA-TTTTTAATT
126 CAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATT
* * *
2598 AAAACACCAAAAAGTTGTTTGCAAAAT
190 CAAAGACC-AAAAGTTGTTTACAAAAT
* * * * * **
2625 GACAAACTATTTAGATCGAATGATGCTG-TTTCCCGAGCATGGAATGTTCGGAATATTGATTAAA
1 GACAAACTATTTAGACCAAATGATGC-GATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * * *
2689 GGAATGGATCGTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACT
65 GGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA
* * * *
2754 AGTTCAGAAGTTTGTCTGAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGCTTTTAGTTTG
128 AGTTCGGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAG---TT--TTT-
** * * *
2818 AAGACCAAGACCAAAACTTGGTTTTCAAAAT
186 AATTCAAAGACCAAAAGTT-GTTTACAAAAT
* * * * * *
2849 GACAAACTATTTAGACCAAAAGATGCAATTTTTCGGGCATGGAATGTTCGGAATATTGATCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
**** * *
2914 GAATGGATCGTCTTGAATACTTTAAGGAGTTAAAGTTATAAAAGAACTCGTAAAAAGCTTGA-AT
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA-
** * *
2978 AGTTCAAAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA-ATT--
* * *
3043 AGACCAAGACCAAAACTTGGTTTTCAAAAT
190 ---CAAAGACCAAAAGTT-GTTTACAAAAT
** * * * *
3073 GA-AAACTATTTAGACCAAAACATACAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGCAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * * * * * *
3137 AAACGGATGGTCTTAAATACTTTAAGGAATCGAAGTTATAAAATAACTCGTAAATGTTTTACGAG
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * * * *
3202 TTCGGTAGTTCGTCCAAGAACCAAGAGAGAGATAATTGTCACTTAAATAAGTTTTAAATTCAAAG
130 TTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
3267 ACCAAAAGTTGTTTACAAAAT
195 ACCAAAAGTTGTTTACAAAAT
* * * * *
3288 GACAAACTATTTAAACCAAAAGACT-TGATTTC-CGGAGAATGGAATGTTC-AAAAATTGCTCGA
1 GACAAACTATTTAGACCAAATGA-TGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGA
** * * * * * * *
3350 TTGAGTTGATCATTTACATAT-AATACAATTCATGGAACCGAAGTTTTAAAAGAACTTGTAAAAG
64 AGGAATGGATC----GC-T-TGAATAC--TTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAG
* * * * * * * * *
3414 TTTGACAAGTCCGGAGGTTCTTCCAAGAATCAAGAGAGAAACAAATCCCACGTCAATAAGTTTTT
121 TTTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
*
3479 AATTCAAAGACCAAAAGTTGTTCACAAAAT
186 AATTCAAAGACCAAAAGTTGTTTACAAAAT
* ** * * * * * *
3509 GAAAAACTATTTAGATTAAATGATGCGATTTTTAGAACATTGAATGTTCGAAAAATTTG-TAGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAA-TTGCTCGAA
* * *
3573 GGAATGGATCG-TATAGAATGCTTTAAGGAACCTAAGTTGTAAAAGAACTAGTAAAAGTTTGACA
65 GGAATGGATCGCT-T-GAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
* * * * **
3637 A-CTCTGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCA
128 AGTTC-GGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
*
3701 AAGACCAAAAGTTGTTTACAGAAT
192 AAGACCAAAAGTTGTTTACAAAAT
* * * * * *
3725 GACAAAATATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * *
3790 GAATGGATCGCCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAAA
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * *
3854 GTTCAGAAGTTCATCTAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAA
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA
3918 GACCAAAAGTTGTTTACAAAAT
194 GACCAAAAGTTGTTTACAAAAT
* * * **
3940 GACAAACTATTTATACCAAGTGATGCAATTTCTCGAGCATGGAATGTTCTCAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * ** ** **
4005 AAATGGATCATCTTGAATAGTTTAAGGAACCAAAGTTATAACAGAAAGAGTAAAAGTTTTCCTCG
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * * * **
4070 TTTGAAAGTTCATCCAAGAACCAGGA-AGAAACAATT-TACACATAAATAAGTCTTTAATTCAGT
130 TTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAA
*
4133 GACCAAAAGTTTTTTTA-AGAAAT
194 GACCAAAAG-TTGTTTACA-AAAT
* * *
4156 GGCAAACTACTTT-GACCGAATGATGCGATTT-TCAGAGCATGGAATGTTCGGAATATTGCTCGA
1 GACAAACTA-TTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGA
* * * * * * *
4219 AGGATTGGATCATCTTGATTAGTTCAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTG
64 AGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTG
* * * * *
4284 ACAAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATA-TTTTTAAT
125 ACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAAT
* *
4348 TCAAACACCAAAAAGTTGTTTGCAAAAT
189 TCAAAGACC-AAAAGTTGTTTACAAAAT
* * * *
4376 GACAAACTATTTAGACCGAATGATACTG-TTTCTCGAGCATGGAATGTTTC-GAATATTGATCGA
1 GACAAACTATTTAGACCAAATGATGC-GATTTCTCGAGCATGGAATG-TTCGGAAAATTGCTCGA
* * *
4439 AGGAATGGATCGTCCTGCAA-ACTTTAAGGAACCAAAGTTATAAAAGGACTAGTAAGAAGTTTGA
64 AGGAATGGATCG-CTTG-AATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAA-AAGTTTGA
* * * *
4503 CTAGTTCAGAAGTTCGTCTGAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTCTAGTT
126 CAAGTTCGGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAG--T-T--TT
** * * *
4567 TGAAGACTAAGACCAAAACTTGGTTTTCAAAAT
185 T-AATTCAAAGACCAAAAGTT-GTTTACAAAAT
* * * *
4600 GACAAACTATTTAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTA-
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * ** *
4664 GAA-GCGATGGTCATGAATACTTTAAGGAACCGAAGTTATAATAGAAATAGTAAAAGTTTTCCTA
66 GAATG-GATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * * * *
4728 GTTCGAAAGTTTGTCCAAGAACCAGGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAG
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * * **
4792 TGACCGAAAGTTTTTTTGAGAAAT
193 AGACCAAAAGTTGTTTACA-AAAT
* * * * *
4816 GGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * *
4881 GATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * * * * *
4946 AAGTTCAGAAGTTTGTCTAAGAATCAACAGAGAAATAATTCTCACATAAATATA-TTTTTTACTC
127 AAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTC
*
5010 AAAGACCAAAAAGTTGTTTGCAAAAT
191 AAAGACC-AAAAGTTGTTTACAAAAT
* * * * * * * * *
5036 GACAAAGTATTTAGACCGAATAATGCTATTTCTCGAGCCTGGAATGTTTGGAATATTGATCGACG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* **** * *
5101 GAATGGATCATCTTGAATACTTTAAGGATTTAAAGTTATAAAAGAACTTGTAAAAAGCTTGA-AT
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA-
* * * *
5165 AGTTCAGAAGTTCGTCTAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTA-ATT--
* * *
5230 AGACCAAGACCAAAACTTGGTTTTCAAAAT
190 ---CAAAGACCAAAAGTT-GTTTACAAAAT
* * * *
5260 GACAAACTATTTAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGGAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* ** * * * * * *
5325 AAACAGATGGTCTTGAATACTTTAAGGAACCGAAGTTATAAAACAATTCGTAAAAGTTTTAAAAG
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * *
5390 ATCGGTAGTTCGTCCAAGAACCAAGAGAGAGACAATTGTCACATAAATAAGTTTTTAATTCAAAG
130 TTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* *
5455 A-CGAAAGTTGTTTTCAAAAT
195 ACCAAAAGTTGTTTACAAAAT
* * * * *
5475 GACAAACTATTTATACCAAGTGAGGCAATTTCTCGAGCATGGAATGTTCGCAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * ** *
5540 AAATGGATCATCTTGTATACTTTAAGGAACCGAAGTTATAACAGAAATAGTAAAAGTTTTCCCAG
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * *
5605 TTCGAAAGTTCGTCCAAGAACCGAGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAAT
130 TTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAA
* * *
5669 GTCCAAAAGTTTTTTTACGAAAT
194 GACCAAAAG-TTGTTTACAAAAT
* * * * * * *
5692 GGCAAATTATTTTGACCGAATGATGCGATTTCTCGAGCATGGAATTTTCAGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * * *
5757 GATTGGATCATCTTGAATACTTTACGGAACCGAAGTTCTTATAGAAGAAATAGTAAAAGCTTGAA
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAG---TTATAAAAGAACTAGTAAAAGTTTGAC
** * * * * * *
5822 AAGTTTAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAACATA-TTTTT-ACTC
127 AAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTC
* *
5885 AAAGAACAAAAAGTTGTTTGCAAAAT
191 AAAG-ACCAAAAGTTGTTTACAAAAT
* * * * * * * ** * **
5911 GACAAAGTATTTAAACCGAATGATGCTATTTCCCGAGCATGGTACGTTTTGAATATTAATCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * *
5976 GAATGGATCGTCCTGAATACTTTAAGGAGCCAAAGTTATAAAAGAACTCGTAAAAAGCTTGA-AT
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA-
* * * *
6040 AGTTCAGAAGTTTGTTTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
6105 AGACCAAAAGTTGTTTACAAAAT
193 AGACCAAAAGTTGTTTACAAAAT
* * * * *
6128 GACAAACTATGTAGACCAAGTGATGCAATTTCTCGAGCATGGCATGTTCGCAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * ** *
6193 AAATGGATCATCTTGAATACTTTAAGGAACCGAATTTATAACAGAAATAGTAAAAGTTTTCCCAG
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * * * * * * **
6258 TTCGAAAGTTTGTCCATGAACGAAGAGGGAAAAAAATT-ACACATAAATAAGTATTTAATTCAGT
130 TTCGGAAGTTCGTCTAAGAACCAAGAGAG-AAACAATTCTCACATAAATAAGTTTTTAATTCAAA
* *
6322 GACCGAAAGTTTTTTTA-AGAAAT
194 GACCAAAAG-TTGTTTACA-AAAT
* * * * * * *
6345 GGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGGGATATTGCTTGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * *
6410 GATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * *
6475 AAGTTCAGAAGTTTGTCTAAGAATCGAA-AGAGAAATAATTCTCACATAAATATA-TTTTTAATT
127 AAGTTCGGAAGTTCGTCTAAGAA-CCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATT
* **
6538 CAAACACCAAAAAGTTGTTTGTAAAAT
190 CAAAGACC-AAAAGTTGTTTACAAAAT
* * * * *
6565 GACAAACTATTTAGA-CAGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAATATTGATTGAA
1 GACAAACTATTTAGACCA-AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAA
** * * * * * *
6629 GGAATGGATCATTTTGAATACTTTAAGGAAGCAAAGTTATAAAATAACTCGTAAAAAGCTTGACT
65 GGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA
* * * * * **
6694 AGTTCAGAAGTTCATCTGAGAACCAA-AGGAGAAACAATTGTCACATAAATAAGTTTTTAGTTTG
128 AGTTCGGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
* * * *
6758 GAGACCCAAACTTGATTTTCAAAAT
192 AAGACCAAAAGTTG-TTTACAAAAT
* * * * *
6783 GACAAATTATTTAGACCAGAA-GATGC-A-------ATCATGGACTGTTTGGAAAATTGCTCGTA
1 GACAAACTATTTAGACCA-AATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * * *
6839 GAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTATAAAATAACTGGTAAAAGTTTTACAA
65 GGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * * *
6904 GTTCGGTACTTCGTCCT-ACAACCAAGAGA-AAGACAATTTTCACATAAATAGGTTTTTAATTCA
129 GTTCGGAAGTTCGT-CTAAGAACCAAGAGAGAA-ACAATTCTCACATAAATAAGTTTTTAATTCA
*
6967 AAGACCAAAAGTTGTTTACAGAAT
192 AAGACCAAAAGTTGTTTACAAAAT
* * *
6991 GACAAACTATTTAGACCAAAAGATTCGATTT-TCAGAG-AGTGGATTGTTC-GAAAATTGCT-G-
1 GACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCA-TGGAATGTTCGGAAAATTGCTCGA
* ** * * * * *
7051 ATGAAGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTTAGAAGAACTTGTAAAAG
64 AGGAA-TGGATC---GCT-T-GAAT--ACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAG
* * * * * * * * *
7116 TTTGACAAGTCCGGAGGTTCATCCAAGAACCAGGAGAGAAACAAATCCCACGTCAATAAGTTTTT
121 TTTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
* *
7181 AATTCAAAGACCAAAAGTTGTTCACAAAGT
186 AATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * * * *
7211 GAAAAACTATTTAGATCAAATGATGCGATTTTTCGAGCATCGAATGTTCGAAAAATTTG-TAGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAA-TTGCTCGAA
* * * * * * * * *
7275 GGAATGGATCGCATAGAATGCTTTAAGGAACCTATGTTGTAGAAGAGCTCGTAAAAGTTTGATAA
65 GGAATGGATCGC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * *
7340 GTTCGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAA
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA
*
7405 GACCAAAAGTTGCTTACAAAAT
194 GACCAAAAGTTGTTTACAAAAT
* * * * * * *
7427 GA-AAA-TATTTAGACCGAATAATGAGATTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * *
7490 GAATGGATCGCCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAAA
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGTTTGACAA
*
7554 GTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAA
7619 GACCAAAAGTTGTTTACAAAAT
194 GACCAAAAGTTGTTTACAAAAT
* * * * *
7641 GACGAACTATTTAGACCAAGTGATGCAATTTCTCGAGCATGGAATGTTTGCAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * ** *
7706 AAATGGATCATCTTGAATACTTTAATGAACCGAAGTTATAACAA-AAATAGTAAAAGTTTTCCTA
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAA-AAGAACTAGTAAAAGTTTGACAA
* * * * *
7770 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TACACATGAATAAGTGTTTAATTCAG
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * * *
7834 TGACCAAAACTTTTTTTACGAAAT
193 AGACCAAAA-GTTGTTTACAAAAT
* * * * * * *
7858 GGCAAACTATTTTGACCGAATGATGCAATTTCCCGACCATGGAATGTTCGGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * *
7923 GATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * * * **
7988 AAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATCTTTTTAATTCA
127 AAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
*
8053 AAGACCAGAAAGTTGTTTGCAAAAT
192 AAGACCA-AAAGTTGTTTACAAAAT
** * * * * *
8078 GACAAACTATTTAGACGGATTGATGCTATTTC-CTGAGCATGGAATGTTCGGGATATTGCTTGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * * * * *
8142 TGAATGGATCGCCCTAAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAGGCTTGAAA
65 GGAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGTTTGACA
* * * *
8206 AGTTCAGAAGTTCGTCTAAGAACCGAGAGAGAAACATTTCTCACGTAAATAAGTTTTTAATTCAA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
* *
8271 AGGCCAAAAGTTGTTTGCAAAAT
193 AGACCAAAAGTTGTTTACAAAAT
** * * * *
8294 GACAAACTATTTAGACCAAGGGATGCAATTTCTCGAGCATGGAATGTTTGCAAAATTGCTTGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * ** *
8359 AAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAACAA-AAATAGTAAAAGTTTTCCTA
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAA-AAGAACTAGTAAAAGTTTGACAA
* * * * * *
8423 GTTCGAAAGTTCGTCCAAGAACTAAGAGAGAAACAATT-TACACATGAATAAGTATTTAATTCAG
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * * *
8487 TGACGAAAAGTTTTTTTACGAAAT
193 AGACCAAAAG-TTGTTTACAAAAT
* * * * * *
8511 GGCAAACTATTTTGACCGAATGATGCGTTTTCCCGAGCATGGAATGTTCGGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * *
8576 GATTGGATCATCTTGAATACTTTAAGGAATCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * * *
8641 AAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATA-TTTTTAATTC
127 AAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTC
* *
8705 AAACACCAAAAAGTTGTTTGCAAAAAT
191 AAAGACC-AAAAGTTGTTTAC-AAAAT
* * * *
8732 GACAAACTATTTAGACCCAATGATGCTATTTC-CTGAGCATGGAATGTTCGGAATATTGCTTGAA
1 GACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * ** * * *
8796 AGAATGGATCGCCCTGAATACTTTAAGGAACC-AATGTTATAAACGAACTCTTAAAGGCTTGAAA
65 GGAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGTTTGACA
* * *
8860 AGTTCAGAAGTTCGTCTAAGAACCGAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
8925 AGACCAAAAGTTGTTTACAAAAT
193 AGACCAAAAGTTGTTTACAAAAT
* * * * *
8948 GACAAACTATTTAGACCAAGTGATGCAATTTCTCGAGCATGGAATGTTTGCAAAATTGCTCAAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * ** *
9013 AAATGGATCATCCTGAATACTTTAAGGAACCGAAGTTATAACAA-AAATAGTAAAAGTTTTCCTA
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAA-AAGAACTAGTAAAAGTTTGACAA
* * * * * *
9077 GTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TACACATGAATAAGTATTTAATTTAG
129 GTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * *
9141 TGACCAAAAGTTTTTTTACGAAAT
193 AGACCAAAAG-TTGTTTACAAAAT
* * * * *
9165 GGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * *
9230 GATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
66 GAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * * *
9295 AAGTTCAGG-AGTTTGTCTAAGAATCAAAAGAGAAATAATTCGCACATAAATATA-TTTTTAATT
127 AAGTTC-GGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATT
*
9358 CAAGGACCAAAAAGTTGTTTGA-AAAAT
190 CAAAGACC-AAAAGTTGTTT-ACAAAAT
* * * * * *
9385 GACAAACTATTCAGACCGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAATATTGATCGAAG
1 GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* ** * * * *
9450 GAATGGATCGCCTTAAATACTTTAAGGAACAAAAGTAATAAAAGAACTCGTAAAAAGCTTGACTA
66 GAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACAA
* * * ** * * * **
9515 GTTCAGAACTTCGTCTGAGAAGTAA-AGGAGAAACAATTCTCACGTAAATAAGTTTCTAGTTTGA
129 GTTCGGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
* *
9579 AGACCAAAACTTGGTTTTCAAAAT
193 AGACCAAAAGTT-GTTTACAAAAT
* * * *
9603 GACAAACTATTTAGACCAAAAT-ATGCAATTCCTTGAGCATGGAATGTTTGGAAAATTGCTCGTA
1 GACAAACTATTTAGACC-AAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCG-A
* * * * * *
9667 A-AAACGGATGGTCTTGAATACTTTAACGAACCGAAGTTATAAAATAACTAGTAAAAGTTTTACA
64 AGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
* * * * ** * * *
9731 AGTTTGGTAGTTCATCCAAGAACCAAGAGAGTGACAATTGTCACATGAATAAGTTTTTAATTCTA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
9796 AGACCAAAAGTTGTTTACAAAAT
193 AGACCAAAAGTTGTTTACAAAAT
* * * *
9819 GACAAACTATTTAAACCAAAAGATTCGATTT-TCGGAGAATGGAATGTTC-GAAAATTGCTCG-A
1 GACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAAAATTGCTCGAA
* ** * * * **
9881 TGAAGTGGATCATTTATATATAACACACTTCAAGGAACCGAAGTTTTAAAAGAACTTTTAAAAGT
65 GGAA-TGGATCGCTT-GA-AT-----ACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGT
* * * * * * ** * *
9946 TTGACAAGTCCGGAGGTTCATCCAAGAACCAAGAGAGAAGCAAATAC-CATGTCAATAAGCTTTT
122 TTGACAAGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAAC-AATTCTCACATAAATAAGTTTTT
* *
10010 AATTCAAAGACTAAAAGTTGTTCACAAAAT
186 AATTCAAAGACCAAAAGTTGTTTACAAAAT
* * * * * *
10040 GAAAAACTATTTAGATCAAATGATGCGATTT-TCCGAACATTGAATGTTCGAAAAATTTG-TAGA
1 GACAAACTATTTAGACCAAATGATGCGATTTCT-CGAGCATGGAATGTTCGGAAAA-TTGCTCGA
* * * * *
10103 AGGAATGGATCGCGTAGAATGCTTTAAGGAACCTAAGTTGTAAAAGAACTCGTAAAAGTTTGACA
64 AGGAATGGATCGC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
* * * * *
10168 AGTTCGGAAGTTCTTCCAAGAACTAAGAGAGAAACAATTTTCACGTAAATAAGTTTTTAATTCAA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
10233 AGACCAAAAGTTGTTTACAAAAT
193 AGACCAAAAGTTGTTTACAAAAT
* * * *
10256 GACGAAA-TATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAA
1 GAC-AAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * *
10320 AGAATGGATCGCCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAA
65 GGAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGTTTGACA
** * **
10384 AGTTTTGAAGTTCGTCTAAGAACCAAGAGAGAAACAGTTCTCATGTAAATAAGTTTTTAATTCA
128 AGTTCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
10448 TGTAAATAAG
Statistics
Matches: 8339, Mismatches: 1543, Indels: 698
0.79 0.15 0.07
Matches are distributed among these distances:
207 2 0.00
208 31 0.00
209 67 0.01
210 69 0.01
213 10 0.00
214 232 0.03
215 627 0.08
216 2023 0.24
217 1124 0.13
218 607 0.07
219 379 0.05
220 1389 0.17
221 543 0.07
222 307 0.04
223 351 0.04
224 577 0.07
225 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (215 bp):
GACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
GAATGGATCGCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGT
TCGGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGA
CCAAAAGTTGTTTACAAAAT
Found at i:3908 original size:653 final size:644
Alignment explanation
Indices: 1--10447 Score: 9174
Period size: 653 Copynumber: 16.0 Consensus size: 644
* * **
1 GACAAACTATTTAGTCCAAGTGATGCAATTTCTCGAGCATGGAATGTTCTCAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATG--ATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * ** ** **
66 AAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAATAGAAAGAGTAAAAGTTTTCCTCG
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * **
131 TTCGAAAGTTCGTCCAAGAACCAGGA-AGAAACAATT-TACACATAAATAAGTATTTAATTCAGG
128 TTCGGAAGTT-TTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAA
* * * *
194 GACCAAAAGTTTTTTTA-AGAAATGGCAAACTACTTT-GACCGAATGATGCGATTTC-CAAAGCA
191 GACCAAAAG-TTGTTTACA-AAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTC-GAGCA
* * * ** **
256 TGGAATGTTCGGAATCTTGCTCGAAGGATTGGATCATCTTTTATAGATTAAGGAACCGAAGTTAT
252 TGGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-
* ** * *
321 TATAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTATCTAAGAATCAAAAGAG-AACTAA
316 TA-A-AAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC-AA
* *
385 TTCTCACATAAATATA-TTTTTAATTCAAACACCAAAAAGTTGTTTGCAAAATGACAAACTATTT
378 TTCTCACATAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTT
* * ** * *
449 AGACCTAATGATGCTG-TTTCCCGAGCATGGAATGTTCAGAATATTGATCGAAGGAATGCATCGT
441 AGACCGAATGATGC-GATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGT
* *
513 CTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTTGTAAAAAGCTTGACTAGTTCAGAAGT
505 CTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGT-AAAAGCTTGACAAGTTCAGAAGT
* * * ** *
577 TTGTTTGAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGCTTTTAGTTTGAAGACCAAGAC
568 TCGTCTAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAG---TT--TTT-AATTCAAAGAC
* *
641 CAAAACTTGGTTTTCAAAAT
626 CAAAAGTT-GTTTACAAAAT
* * *
661 GACAAACTATTTAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTA-
1 GACAAACTATTTAGACCAAATGATG--ATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAG
** * * * ** *
725 GAA-GCGATGGTCATGAATACTTTAAGGAACCGAAGTTATAATAGAAATAGTAAAAGTTTTCCTA
63 GAATG-GATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * *
789 GTTCGAAAGTTTGTCCAAGAACCAGGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAG
127 GTTCGGAAGTTT-TCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * * ** * * *
853 TGACCGAAAGTTTTTTTGAGAAAT-AGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCAT
190 AGACCAAAAGTTGTTTACA-AAATGA-CAAACTATTTAGACCAAATGATGCGATTTCTCGAGCAT
* * *
917 GGAATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTTTATGGAACCGAAGTTATT
253 GGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-T
* * * * * *
982 ATAGAAGAAATAGTAAAAGCTTGACACGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATT
317 A-A-AAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATT
* * * *
1047 CTCACAAAAATATA-TTTTT-ACTCAAAGACCAAAAAGTTGTTTGCAAAATGACAAAGTATTTAG
380 CTCACATAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAG
* * ** * *
1110 ACCCAATGATGCTATTTCTCGAGCATGGAATGTTCAGAATATTGATCGAAGGAATGGATTGTCTT
443 ACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTT
* * * *
1175 GAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAACTTGA-ATAGTTCAAAAGTTCG
508 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGCTTGACA-AGTTCAGAAGTTCG
* *
1239 TCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAGACCAAA
571 TCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA-ATT-----CAAAGACCAAA
* *
1304 ACTTGGTTTTCAAAAT
630 AGTT-GTTTACAAAAT
***** * *
1320 GACAAACTATTTAGACCAAAANNNNCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTAG
1 GACAAACTATTTAGACC-AAA-TGATGATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * ** * * * *
1385 AAACGGATGGTCTTGAATACTTTAAGGAACCGAAGTTATAAAATAACTCGTAAATGATTT-ACGA
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAG-TTTGACAA
* * * * * * * *
1449 GTTCGGTAGTTAGTCCAAGAAGCAAGAGAGAGATAATTGTCACTTAAATAAGTTTTAAATTCAAA
127 GTTCGGAAGTT-TTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTC-AA
* * * *
1514 AGACCAAAAGTTGTTTACACAATGACAAACTATTTAAACCAAAAGACT-CGATTTC-CGGAGAAT
190 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA-TGCGATTTCTC-GAGCAT
* * ** * * * *
1577 GGAATGTT-TGAAAATTGCTCGATTGAGTTGATCGTTTACATAT-AATACAATTCATGGAACCGA
253 GGAATGTTCGGAATATTGCTCGAAGGAATGGATCG--T-C-T-TGAATAC--TTTAAGGAACCGA
* * * * * * *
1640 AGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTCCGGAGGTTCGTCCAAGAACCAAGAGAGAAAC
311 AGTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC
* * * * * *
1705 AAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAGGTTGTTTACAAAATGAAAAACTATTT
376 AATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT
* * * * * * * *
1770 AGATCAAATGATGCGATTTTTCGAACATTGAATGTTCT-AAAAATTTG-TAGAAGGAATGGATCG
441 AGACCGAATGATGCGATTTCTCGAGCATGGAATGTT-TGGAATA-TTGCTCGAAGGAATGGATCG
* * * * * * * ** * *
1833 -CATAGAATGCTTTAAGGAGCCTAAGCTGTAAAAGAACTCGTAAAATTTTGACAA-CTCTGGAAG
504 TC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGCTTGACAAGTTC-AGAAG
* * * *
1896 TTCATCCAAGAACTAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
567 TTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAG
* *
1961 TTATTTACAGAAT
632 TTGTTTACAAAAT
* * * * * * * * *
1974 GAAAAAATATTTAGATCGAATGATGCGCTTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAAA
1 GACAAACTATTTAGACCAAATGAT--GATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAG
** * * *
2039 GAATGGATCGCCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAAA
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * * * *
2103 GTTCAGAAGTTCATCTAAGAA-CTAGTTGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAA
127 GTTCGGAAGTT-TTCCAAGAACCAAG-AGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
*
2166 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAGTGATGC-AGTTTCTCGAGCATG
190 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGA-TTTCTCGAGCATG
** * ** * *
2230 GAATGTTCTCAAAATTGCTCGAATAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAA
254 GAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* ** * ** ** * *
2295 TAGAAAGAGTAAAAGTTTTCCTCGTTC-GAAAGTTCGTCCAAGAACCAGGA-AGAAACAATT-TA
319 AAGAACTAGTAAAAGCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-
* ** * * * * *
2357 CACATAAATAAGTATTTAATTCAGTGACCAAAAGTTTTTTTACGAAATGGCAAACTATTTTGATC
382 CACATAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACC
* * * *
2422 GAATGATGCGATTTC-CAGAGCACGGAATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGA
446 GAATGATGCGATTTCTC-GAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTTGA
* * * * * *
2486 ATAGTTTAATGAACCGAAGTAATTGTAAAAGAAATAGTAAAAGCTTGACAAGTTCAGAAATTTGT
510 ATACTTTAAGGAACCGAAG---TTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGT
* * * * * * *
2551 CTAAGAATCAAAAGAGAAATAATTATCACATAAATATA-TTTTTAATTAAAACACCAAAAAGTTG
572 CTAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTG
*
2615 TTTGCAAAAT
635 TTTACAAAAT
* * * * * **
2625 GACAAACTATTTAGATCGAATGATGCTGTTTCCCGAGCATGGAATGTTCGGAATATTGATTAAAG
1 GACAAACTATTTAGACCAAATGATG--ATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * *
2690 GAATGGATCGTCTTGAATACTTTATGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACTA
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACAA
* ** *
2755 GTTCAGAAGTTTGTCTGAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGCTTTTAGTTTGA
127 GTTCGGAAGTTT-TCCAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAG---TT--TTT-A
** * * * * * *
2819 AGACCAAGACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGATGCAATTTTTCG
184 ATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCG
* * ****
2884 GGCATGGAATGTTCGGAATATTGATCGAAGGAATGGATCGTCTTGAATACTTTAAGGAGTTAAAG
248 AGCATGGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* *
2949 TTATAAAAGAACTCGTAAAAAGCTTGA-ATAGTTCAAAAGTTCGTCTAAGAACCAAGAGAGAAAC
313 TTATAAAAGAACTAGT-AAAAGCTTGACA-AGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAAC
* * * * *
3013 AATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAGACCAAAACTTGGTTTTCAAAATGA-AA
376 AATTCTCACATAAATAAGTTTTTA-ATT-----CAAAGACCAAAAGTT-GTTTACAAAATGACAA
* ** * * * * * *
3077 ACTATTTAGACCAAAACATACAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGCAGAAACG
434 ACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATG
* * * * * * * * * *
3142 GATGGTCTTAAATACTTTAAGGAATCGAAGTTATAAAATAACTCGTAAATGTTTTACGAGTTCGG
499 GATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAG
* * * * * * *
3207 TAGTTCGTCCAAGAACCAAGAGAGAGATAATTGTCACTTAAATAAGTTTTAAATTCAAAGACCAA
564 AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAA
3272 AAGTTGTTTACAAAAT
629 AAGTTGTTTACAAAAT
* * * * **
3288 GACAAACTATTTAAACCAAAAGACTTGATTTCCGGAGAATGGAATGTTC-AAAAATTGCTCGATT
1 GACAAACTATTTAGACCAAATGA--TGATTTCC-GAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * *
3352 GAGTTGATCATTTACATAT-AATACAATTCATGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTT
63 GAATGGATCA--T-C-T-TGAATAC--TTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTT
* * * * * * *
3416 TGACAAGTCCGGAGGTTCTTCCAAGAATCAAGAGAGAAACAAATCCCACGTCAATAAGTTTTTAA
121 TGACAAGTTCGGAAGTT-TTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
* * ** * * *
3481 TTCAAAGACCAAAAGTTGTTCACAAAATGAAAAACTATTTAGATTAAATGATGCGATTTTTAGAA
185 TTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAG
* * * * * * * *
3546 CATTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCGTATAGAATGCTTTAAGGAACCTAAGT
250 CATGGAATGTTCGGAATA-TTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGT
* * * * * * *
3610 TGTAAAAGAACTAGTAAAAGTTTGACAA-CTCTGGAAGTTCATCCAAGAACTAAGAGAGAAACAA
314 TATAAAAGAACTAGTAAAAGCTTGACAAGTTC-AGAAGTTCGTCTAAGAACCAAGAGAGAAACAA
** * *
3674 TTCTCATGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAGAATGACAAAATATTTAG
378 TTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * *
3739 ACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAAAGAATGGATCGCCTT
443 ACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTT
* * *
3804 GAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCAT
508 GAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGT
*
3868 CTAAGAACCAGGAGAGAAACAATTCTCACGTAAATAAG-TTTTAATTCAAAGACCAAAAGTTGTT
572 CTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTT
3932 TACAAAAT
637 TACAAAAT
* * **
3940 GACAAACTATTTATACCAAGTGATGCAATTTCTCGAGCATGGAATGTTCTCAAAATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATG--ATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * ** ** **
4005 AAATGGATCATCTTGAATAGTTTAAGGAACCAAAGTTATAACAGAAAGAGTAAAAGTTTTCCTCG
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * * **
4070 TTTGAAAGTTCATCCAAGAACCAGGA-AGAAACAATT-TACACATAAATAAGTCTTTAATTCAGT
128 TTCGGAAGTT-TTCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAA
* * *
4133 GACCAAAAGTTTTTTTA-AGAAATGGCAAACTACTTT-GACCGAATGATGCGATTT-TCAGAGCA
191 GACCAAAAG-TTGTTTACA-AAATGACAAACTA-TTTAGACCAAATGATGCGATTTCTC-GAGCA
* * * * *
4195 TGGAATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGATTAGTTCAAGGAACCGAAGTTAT
252 TGGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-
* * * * *
4260 TATAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAAT
316 TA-A-AAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAAT
* *
4325 TCTCACATAAATATA-TTTTTAATTCAAACACCAAAAAGTTGTTTGCAAAATGACAAACTATTTA
379 TCTCACATAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTA
* * *
4389 GACCGAATGATACTG-TTTCTCGAGCATGGAATGTTTCGAATATTGATCGAAGGAATGGATCGTC
442 GACCGAATGATGC-GATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTC
* * * * *
4453 CTGCAA-ACTTTAAGGAACCAAAGTTATAAAAGGACTAGTAAGAAGTTTGACTAGTTCAGAAGTT
506 TTG-AATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAA-AAGCTTGACAAGTTCAGAAGTT
* ** *
4517 CGTCTGAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTCTAGTTTGAAGACTAAGACC
569 CGTCTAAGAACCAAGA-GAGAAACAATTCTCACGTAAATAAG--T-T--TTT-AATTCAAAGACC
* *
4581 AAAACTTGGTTTTCAAAAT
627 AAAAGTT-GTTTACAAAAT
* * *
4600 GACAAACTATTTAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTA-
1 GACAAACTATTTAGACCAAATGATG--ATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAG
** * * * ** *
4664 GAA-GCGATGGTCATGAATACTTTAAGGAACCGAAGTTATAATAGAAATAGTAAAAGTTTTCCTA
63 GAATG-GATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAA
* * * *
4728 GTTCGAAAGTTTGTCCAAGAACCAGGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAG
127 GTTCGGAAGTTT-TCCAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAA
* * * ** * * * *
4792 TGACCGAAAGTTTTTTTGAGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATG
190 AGACCAAAAGTTGTTTACA-AAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATG
* *
4857 GAATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTA
254 GAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA-TA
* * * * *
4922 TAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTGTCTAAGAATCAACAGAGAAATAATTC
318 -A-AAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTC
* * * *
4987 TCACATAAATATA-TTTTTTACTCAAAGACCAAAAAGTTGTTTGCAAAATGACAAAGTATTTAGA
381 TCACATAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * *
5051 CCGAATAATGCTATTTCTCGAGCCTGGAATGTTTGGAATATTGATCGACGGAATGGATCATCTTG
444 CCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTTG
**** *
5116 AATACTTTAAGGATTTAAAGTTATAAAAGAACTTGTAAAAAGCTTGA-ATAGTTCAGAAGTTCGT
509 AATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGCTTGACA-AGTTCAGAAGTTCGT
* * *
5180 CTAAGAACCAAGTGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAGACCAAAA
572 CTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTA-ATT-----CAAAGACCAAAA
* *
5245 CTTGGTTTTCAAAAT
631 GTT-GTTTACAAAAT
* * *
5260 GACAAACTATTTAGACCAAAAGATGCAATTTCTCGAGCATGGAATGTTCGAAAAATTGCTCGGAG
1 GACAAACTATTTAGACCAAATGATG--ATTTC-CGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* ** ** * * * * *
5325 AAACAGATGGTCTTGAATACTTTAAGGAACCGAAGTTATAAAACAATTCGTAAAAGTTTTAAAAG
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAG
* * * * *
5390 ATCGGTAGTTCGTCCAAGAACCAAGAGAGAGACAATTGTCACATAAATAAGTTTTTAATTCAAAG
128 TTCGGAAGTT-TTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * * * *
5455 A-CGAAAGTTGTTTTCAAAATGACAAACTATTTATACCAAGTGAGGCAATTTCTCGAGCATGGAA
192 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAA
* * * * * *
5519 TGTTCGCAAAATTGCTCGAAGAAATGGATCATCTTGTATACTTTAAGGAACCGAAGTTATAACAG
257 TGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAG
* * ** * * *
5584 AAATAGTAAAAGTTTTCCCAGTTC-GAAAGTTCGTCCAAGAACCGAGAGAGAAACAATT-TACAC
322 AACTAGTAAAAGCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CAC
* * * * * * * *
5647 ATAAATAAGTATTTAATTCAATGTCCAAAAGTTTTTTTACGAAATGGCAAATTATTTTGACCGAA
385 ATAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCGAA
* * *
5712 TGATGCGATTTCTCGAGCATGGAAT-TTTCAGAATATTGCTCGAAGGATTGGATCATCTTGAATA
449 TGATGCGATTTCTCGAGCATGGAATGTTT-GGAATATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * * * *
5776 CTTTACGGAACCGAAGTTCTTATAGAAGAAATAGTAAAAGCTTGAAAAGTTTAGAAGTTTGTCTA
513 CTTTAAGGAACCGAAG---TTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTA
* * * * * * *
5841 AGAATCAAAAGAGAAATAATTCTCACATAAACATA-TTTTT-ACTCAAAGAACAAAAAGTTGTTT
575 AGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAG-ACCAAAAGTTGTTT
*
5904 GCAAAAT
638 ACAAAAT
* * * * * ** * **
5911 GACAAAGTATTTAAACCGAATGATGCTATTTCCCGAGCATGGTACGTTTTGAATATTAATCGAAG
1 GACAAACTATTTAGACCAAATGATG--ATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * * * *
5976 GAATGGATCGTCCTGAATACTTTAAGGAGCCAAAGTTATAAAAGAACTCGTAAAAAGCTTGA-AT
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA-
* ** *
6040 AGTTCAGAAGTTTGTTTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
126 AGTTCGGAAGTTT-TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
* * *
6105 AGACCAAAAGTTGTTTACAAAATGACAAACTATGTAGACCAAGTGATGCAATTTCTCGAGCATGG
190 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGG
* * * * * * *
6170 CATGTTCGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAATTTATAAC
255 AATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * ** * * * * * * * *
6235 AGAAATAGTAAAAGTTTTCCCAGTTC-GAAAGTTTGTCCATGAACGAAGAGGGAAAAAAATT-AC
320 AGAACTAGTAAAAGCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAG-AAACAATTCTC
* ** * * * *
6298 ACATAAATAAGTATTTAATTCAGTGACCGAAAGTTTTTTTA-AGAAATGGCAAACTATTTTGACC
383 ACATAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACA-AAATGACAAACTATTTAGACC
* * * * * *
6362 GAATGATGCGATTTCCCGAGCATGGAATGTTCGGGATATTGCTTGAAGGATTGGATCATCTTGAA
446 GAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTTGAA
* *
6427 TACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTTGTC
511 TACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTC
* * * *
6492 TAAGAATCGAA-AGAGAAATAATTCTCACATAAATATA-TTTTTAATTCAAACACCAAAAAGTTG
573 TAAGAA-CCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTG
**
6555 TTTGTAAAAT
635 TTTACAAAAT
* * *
6565 GACAAACTATTTAGA-CAGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAATATTGATTGAA
1 GACAAACTATTTAGACCA-AATGATG--ATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAA
* * * * * * *
6629 GGAATGGATCATTTTGAATACTTTAAGGAAGCAAAGTTATAAAATAACTCGTAAAAAGCTTGACT
62 GGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGT-AAAAGTTTGACA
* * ** * * **
6694 AGTTCAGAAGTTCATCTGAGAACCAA-AGGAGAAACAATTGTCACATAAATAAGTTTTTAGTTTG
126 AGTTCGGAAGTT-TTCCAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
* * * * * *
6758 GAGACCCAAACTTGATTTTCAAAATGACAAATTATTTAGACCAGAA-GATGC-A-------ATCA
189 AAGACCAAAAGTTG-TTTACAAAATGACAAACTATTTAGACCA-AATGATGCGATTTCTCGAGCA
* * * * * *
6814 TGGACTGTTTGGAAAATTGCTCGTAGAAATGGATCGTCTTGAATACTTTAAGGAACTGAAGTTAT
252 TGGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* * * * * * * *
6879 AAAATAACTGGTAAAAGTTTTACAAGTTCGGTACTTCGTCCT-ACAACCAAGAGA-AAGACAATT
317 AAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGT-CTAAGAACCAAGAGAGAA-ACAATT
* * *
6942 TTCACATAAATAGGTTTTTAATTCAAAGACCAAAAGTTGTTTACAGAATGACAAACTATTTAGAC
380 CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * * * * * *
7007 CAAAAGATTCGATTT-TCAGAG-AGTGGATTG-TTCGAAAATTGCT-G-ATGAAGTGGATCATTT
445 CGAATGATGCGATTTCTC-GAGCA-TGGAATGTTTGGAATATTGCTCGAAGGAA-TGGATC--GT
* * * * * * * * * *
7067 ATATATAATACACTTCAAGGAACCGAAGTTTTAGAAGAACTTGTAAAAGTTTGACAAGTCCGGAG
505 CT-T-GAAT--ACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAA
* * * * * *
7132 GTTCATCCAAGAACCAGGAGAGAAACAAATCCCACGTCAATAAGTTTTTAATTCAAAGACCAAAA
566 GTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAA
* *
7197 GTTGTTCACAAAGT
631 GTTGTTTACAAAAT
* * * * * *
7211 GAAAAACTATTTAGATCAAATGATGCGATTTTTCGAGCATCGAATGTTCGAAAAATTTG-TAGAA
1 GACAAACTATTTAGACCAAATGAT--GA-TTTCCGAGCATGGAATGTTCGGAAAA-TTGCTCGAA
* * * * * * * * * *
7275 GGAATGGATC-GCATAGAATGCTTTAAGGAACCTATGTTGTAGAAGAGCTCGTAAAAGTTTGATA
62 GGAATGGATCATC-TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACA
* * *
7339 AGTTCGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAA
126 AGTTCGGAAGTT-TTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAA
* * * *
7404 AGACCAAAAGTTGCTTACAAAATGA-AAA-TATTTAGACCGAATAATGAGATTTCTCGAGCATGG
190 AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGG
* * * *
7467 AATGTTTGGAATATTGCTTGAAAGAATGGATCGCCTTGAATACTTTAAGGAACC-AATGTTATAA
255 AATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTATAA
* *
7531 AAGAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCA
319 AAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCA
*
7596 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACGAACTATTTAGACC-AA
384 CATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAA
* * * * *
7660 GTGATGCAATTTCTCGAGCATGGAATGTTTGCAAAATTGCTCGAAGAAATGGATCATCTTGAATA
449 -TGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTTGAATA
* * * ** * *
7725 CTTTAATGAACCGAAGTTATAACAA-AAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAA
513 CTTTAAGGAACCGAAGTTATAA-AAGAACTAGTAAAAGCTTGACAAGTTCAG-AAGTTCGTCTAA
* * * ** * *
7788 GAACCAAGAGAGAAACAATT-TACACATGAATAAGTGTTTAATTCAGTGACCAAAACTTTTTTTA
576 GAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAA-GTTGTTTA
*
7852 CGAAAT
639 CAAAAT
* * * * *
7858 GGCAAACTATTTTGACCGAATGATGCAATTTCCCGACCATGGAATGTTCGGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGATG--ATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * *
7923 GATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * * * **
7988 AAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATCTTTTTAATTCA
125 AAGTTCGGAAGTTT-TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCA
* ** * *
8053 AAGACCAGAAAGTTGTTTGCAAAATGACAAACTATTTAGACGGATTGATGCTATTTC-CTGAGCA
189 AAGACCA-AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAGCA
* * * * * *
8117 TGGAATGTTCGGGATATTGCTTGAATGAATGGATCGCCCTAAATACTTTAAGGAACC-AATGTTA
252 TGGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTA
* * * * *
8181 TAAAAGAACTCGTAAAGGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCGAGAGAGAAACATTTC
316 TAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTC
* * *
8246 TCACGTAAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTGCAAAATGACAAACTATTTAGACC
381 TCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACC
* * * * * * *
8311 -AAGGGATGCAATTTCTCGAGCATGGAATGTTTGCAAAATTGCTTGAAGAAATGGATCATCTTGA
446 GAA-TGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTTGA
* * ** *
8375 ATACTTTAAGGAACCGAAGTTATAACAA-AAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTC
510 ATACTTTAAGGAACCGAAGTTATAA-AAGAACTAGTAAAAGCTTGACAAGTTCAG-AAGTTCGTC
* * * * * ** * *
8438 CAAGAACTAAGAGAGAAACAATT-TACACATGAATAAGTATTTAATTCAGTGACGAAAAGTTTTT
573 TAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGT
*
8502 TTACGAAAT
636 TTACAAAAT
* * * * *
8511 GGCAAACTATTTTGACCGAATGATGCGTTTTCCCGAGCATGGAATGTTCGGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGAT--GATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * *
8576 GATTGGATCATCTTGAATACTTTAAGGAATCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * * *
8641 AAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATA-TTTTTAATTC
125 AAGTTCGGAAGTTT-TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTC
* * * *
8705 AAACACCAAAAAGTTGTTTGCAAAAATGACAAACTATTTAGACCCAATGATGCTATTTC-CTGAG
188 AAAGACC-AAAAGTTGTTTAC-AAAATGACAAACTATTTAGACCAAATGATGCGATTTCTC-GAG
* * * *
8769 CATGGAATGTTCGGAATATTGCTTGAAAGAATGGATCGCCCTGAATACTTTAAGGAACC-AATGT
250 CATGGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GT
* ** * * *
8833 TATAAACGAACTCTTAAAGGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCGAGAGAGAAACAAT
314 TATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAAT
*
8898 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
379 TCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * *
8963 CC-AAGTGATGCAATTTCTCGAGCATGGAATGTTTGCAAAATTGCTCAAAGAAATGGATCATCCT
444 CCGAA-TGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTT
* * ** *
9027 GAATACTTTAAGGAACCGAAGTTATAACAA-AAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCG
508 GAATACTTTAAGGAACCGAAGTTATAA-AAGAACTAGTAAAAGCTTGACAAGTTCAG-AAGTTCG
* * * * * **
9090 TCCAAGAACCAAGAGAGAAACAATT-TACACATGAATAAGTATTTAATTTAGTGACCAAAAGTTT
571 TCTAAGAACCAAGAGAGAAACAATTCT-CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TT
* *
9154 TTTTACGAAAT
634 GTTTACAAAAT
* * * *
9165 GGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGGAATATTGCTCGAAG
1 GACAAACTATTTAGACCAAATGAT--GATTT-CCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * *
9230 GATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGTAAAAGCTTGAC
63 GAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTAGTAAAAGTTTGAC
* * * * *
9295 AAGTTCAGG-AGTTTGTCTAAGAATCAAAAGAGAAATAATTCGCACATAAATATA-TTTTTAATT
125 AAGTTC-GGAAGTTT-TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATT
* * * * *
9358 CAAGGACCAAAAAGTTGTTTGA-AAAATGACAAACTATTCAGACCGAATGATGCTATTTCCCGAG
187 CAAAGACC-AAAAGTTGTTT-ACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAG
* * * ** *
9422 CATGGAATGTTCGGAATATTGATCGAAGGAATGGATCGCCTTAAATACTTTAAGGAACAAAAGTA
250 CATGGAATGTTCGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTT
* * * * **
9487 ATAAAAGAACTCGTAAAAAGCTTGACTAGTTCAGAACTTCGTCTGAGAAGTAA-AGGAGAAACAA
315 ATAAAAGAACTAGT-AAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGA-GAGAAACAA
* * * ** * *
9551 TTCTCACGTAAATAAGTTTCTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATTTA
378 TTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTA
* * * * * * * *
9616 GACCAAAAT-ATGCAATTCCTTGAGCATGGAATGTTTGGAAAATTGCTCGTAA-AAACGGATGGT
442 GACC-GAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCG-AAGGAATGGATCGT
* * * * ** *
9679 CTTGAATACTTTAACGAACCGAAGTTATAAAATAACTAGTAAAAGTTTTACAAGTTTGGTAGTTC
505 CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTC
* * ** * * * *
9744 ATCCAAGAACCAAGAGAGTGACAATTGTCACATGAATAAGTTTTTAATTCTAAGACCAAAAGTTG
570 GTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
9809 TTTACAAAAT
635 TTTACAAAAT
* * * * *
9819 GACAAACTATTTAAACCAAAAGATTCGATTTTCGGAGAATGGAATGTTC-GAAAATTGCTCG-AT
1 GACAAACTATTTAGACCAAATGA-T-GA-TTTCCGAGCATGGAATGTTCGGAAAATTGCTCGAAG
* * * **
9882 GAAGTGGATCAT-TTATATATAACACACTTCAAGGAACCGAAGTTTTAAAAGAACTTTTAAAAGT
63 GAA-TGGATCATCTT-GA-AT-----ACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGT
* * * * * ** * *
9946 TTGACAAGTCCGGAGGTTCATCCAAGAACCAAGAGAGAAGCAAATAC-CATGTCAATAAGCTTTT
120 TTGACAAGTTCGGAAGTT-TTCCAAGAACCAAGAGAGAAAC-AATTCTCACATAAATAAGTTTTT
* * * *
10010 AATTCAAAGACTAAAAGTTGTTCACAAAATGAAAAACTATTTAGATCAAATGATGCGATTT-TCC
183 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCT-C
* * * * * * * *
10074 GAACATTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCG-CGTAGAATGCTTTAAGGAACCT
247 GAGCATGGAATGTTCGGAATA-TTGCTCGAAGGAATGGATCGTC-TTGAATACTTTAAGGAACCG
* * * * * * *
10137 AAGTTGTAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCTTCCAAGAACTAAGAGAGAAA
310 AAGTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAA
* *
10202 CAATTTTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACGAAA-TAT
375 CAATTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC-AAACTAT
* *
10266 TTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAAAGAATGGATCG
439 TTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCG
* * * **
10331 CCTTGAATACTTTAAGGAACC-AATGTTATAAAAGAACTCGTAAAAGCTTGAAAAGTTTTGAAGT
504 TCTTGAATACTTTAAGGAACCGAA-GTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGT
* *
10395 TCGTCTAAGAACCAAGAGAGAAACAGTTCTCATGTAAATAAGTTTTTAATTCA
568 TCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCA
10448 TGTAAATAAG
Statistics
Matches: 8291, Mismatches: 1200, Indels: 599
0.82 0.12 0.06
Matches are distributed among these distances:
641 2 0.00
642 13 0.00
643 7 0.00
644 17 0.00
645 88 0.01
646 337 0.04
647 557 0.07
648 20 0.00
649 22 0.00
650 434 0.05
651 382 0.05
652 362 0.04
653 1484 0.18
654 1186 0.14
655 349 0.04
656 237 0.03
657 9 0.00
658 75 0.01
659 683 0.08
660 1207 0.15
661 245 0.03
662 216 0.03
663 77 0.01
664 81 0.01
665 19 0.00
666 6 0.00
667 128 0.02
668 48 0.01
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (644 bp):
GACAAACTATTTAGACCAAATGATGATTTCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAA
TGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTAGTAAAAGTTTGACAAGTTC
GGAAGTTTTCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAGACCA
AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTCTCGAGCATGGAATGTT
CGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACT
AGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAAT
AAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCG
ATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGG
AACCGAAGTTATAAAAGAACTAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAG
AGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAAT
Found at i:11557 original size:39 final size:39
Alignment explanation
Indices: 11514--11612 Score: 162
Period size: 39 Copynumber: 2.5 Consensus size: 39
11504 TTAATTTGTC
* *
11514 TCAAACTTAGACACCTTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
*
11553 TCAAAATAAGACACATTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
*
11592 TCAAACTAAGACATATTAAAA
1 TCAAACTAAGACACATTAAAA
11613 CCCTATTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.54, C:0.15, G:0.05, T:0.26
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
Found at i:14762 original size:31 final size:31
Alignment explanation
Indices: 14719--14797 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 31
14709 TCTCTCTTTT
*
14719 TCTTCCTTTTCACTTTCTTTGCTCTTTTCTC
1 TCTTTCTTTTCACTTTCTTTGCTCTTTTCTC
14750 TCTTTCTTTTCACTTTCTTTGCTCTTTTCTC
1 TCTTTCTTTTCACTTTCTTTGCTCTTTTCTC
*
14781 TC-AT-TTTTC-CTTTCTTT
1 TCTTTCTTTTCACTTTCTTT
14798 TTTTCAATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
28 8 0.17
29 5 0.11
30 1 0.02
31 32 0.70
ACGTcount: A:0.04, C:0.29, G:0.03, T:0.65
Consensus pattern (31 bp):
TCTTTCTTTTCACTTTCTTTGCTCTTTTCTC
Found at i:14765 original size:20 final size:19
Alignment explanation
Indices: 14706--14765 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
14696 CACGTTTAAT
14706 TTTTCTCTCTTT-TTCTTCC
1 TTTTCTCTCTTTCTT-TTCC
* *
14725 -TTT-TCACTTTCTTTGCTC
1 TTTTCTCTCTTTCTTTTC-C
14743 TTTTCTCTCTTTCTTTTCAC
1 TTTTCTCTCTTTCTTTTC-C
14763 TTT
1 TTT
14766 CTTTGCTCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
17 8 0.25
18 6 0.19
19 3 0.09
20 15 0.47
ACGTcount: A:0.03, C:0.28, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTCTCTCTTTCTTTTCC
Found at i:14776 original size:11 final size:11
Alignment explanation
Indices: 14731--14776 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
14721 TTCCTTTTCA
14731 CTTTCTTTGCT
1 CTTTCTTTGCT
*
14742 CTTT-TCT-CT
1 CTTTCTTTGCT
* *
14751 CTTTCTTTTCA
1 CTTTCTTTGCT
14762 CTTTCTTTGCT
1 CTTTCTTTGCT
14773 CTTT
1 CTTT
14777 TCTCTCATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
9 6 0.21
10 4 0.14
11 18 0.64
ACGTcount: A:0.02, C:0.28, G:0.04, T:0.65
Consensus pattern (11 bp):
CTTTCTTTGCT
Found at i:14798 original size:21 final size:20
Alignment explanation
Indices: 14772--14819 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
14762 CTTTCTTTGC
*
14772 TCTTTTCTCTCATTTTTCCTT
1 TCTTTT-TCTCAATTTTCCTT
* *
14793 TCTTTTTTTCAATTTTCTTT
1 TCTTTTTCTCAATTTTCCTT
14813 TCTTTTT
1 TCTTTTT
14820 ATTCTCACTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (20 bp):
TCTTTTTCTCAATTTTCCTT
Found at i:17694 original size:10 final size:10
Alignment explanation
Indices: 17681--17713 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
17671 AATTAAGTAA
*
17681 GGAGCTGAAT
1 GGAGGTGAAT
17691 GGAGGTGAAT
1 GGAGGTGAAT
17701 GGAGGTGAAT
1 GGAGGTGAAT
17711 GGA
1 GGA
17714 CTAGGCTAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.30, C:0.03, G:0.48, T:0.18
Consensus pattern (10 bp):
GGAGGTGAAT
Found at i:18042 original size:32 final size:32
Alignment explanation
Indices: 18006--18068 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
17996 GCCATCCATA
* *
18006 CATGTACCTGAAATATATTAATCAACTAATTG
1 CATGTACCTGAAACACATTAATCAACTAATTG
*
18038 CATGTACCTGAAACACATTAATCAGCTAATT
1 CATGTACCTGAAACACATTAATCAACTAATT
18069 AATTTCGGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (32 bp):
CATGTACCTGAAACACATTAATCAACTAATTG
Found at i:18157 original size:39 final size:39
Alignment explanation
Indices: 18114--18212 Score: 171
Period size: 39 Copynumber: 2.5 Consensus size: 39
18104 TTAATTTTTC
* *
18114 TCAAACTTAGACACCTTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
*
18153 TCAAAATAAGACACATTAAAAACAACTATTAAATATGTA
1 TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
18192 TCAAACTAAGACACATTAAAA
1 TCAAACTAAGACACATTAAAA
18213 CCCTATTTAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.54, C:0.16, G:0.05, T:0.25
Consensus pattern (39 bp):
TCAAACTAAGACACATTAAAAACAACTATTAAATATGTA
Found at i:18286 original size:8 final size:8
Alignment explanation
Indices: 18273--18305 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
18263 TTAAAAAAAT
18273 TAACTAAA
1 TAACTAAA
18281 TAACTAAA
1 TAACTAAA
18289 TAACTAAA
1 TAACTAAA
18297 TAAACTAAA
1 T-AACTAAA
18306 ACAAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (8 bp):
TAACTAAA
Found at i:19856 original size:437 final size:428
Alignment explanation
Indices: 18596--25845 Score: 6145
Period size: 437 Copynumber: 16.7 Consensus size: 428
18586 TGGCCGTATC
** *
18596 ACCAAAAGTTGTTTACAAAATGACAAACTACATAGACC-AAGTGATGCAATTTCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAA-TGATGCGATTTC-CGAGCATGGA
* *
18660 ATGTTCGCAAAATTGCTCGAAGAAATGGATCA-TCTTGAATACTTTAAGGAACCAAAGTTATAAC
64 ATGTTCG-AATATTGCTCGAAG-AATGGATCACT-TTGAATACTTTAAGGAACCAAAGTTTTAA-
* * * ** * *
18724 AA-AAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAG-ACCAAGAGAGAAACAATT-TA
125 AAGAACTCGTAAAAGCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-
* * ** * * * *
18785 CACTTAAATAAGTATTTAATTCAGTGACCAAAAGTTTTTTTACGAAATGGCAAACTATTTTGACC
188 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACC
* * * * * * * *
18850 GAATGATG-CAATTTCTCGAGCATGCAATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGA
252 AAATGATGTGATTTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GCTTGA
** * * *
18914 ATACTTTAAGGAATTGAAGTTATTATAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGATT-G
315 ATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTCG
* * * * *
18978 TCTAAGTATCAAAAGAG-AACTAATTCTCACGTAAATATA-TTTTTAATTCAAAG
376 TCCAAGAACCAAGAGAGAAAC-AATTCTCACATAAATA-AGTTTTTAATTCAAAG
* * * *
19031 GCCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATCCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTT-CCGAGCATGGA
* * * * *
19096 ATGTTCGGAATATTGATTGAAGGAATGGATC-GTCTTGAATACTTTAGGGAACCAAAGTTATAAA
64 ATGTTC-GAATATTGCTCGAA-GAATGGATCACT-TTGAATACTTTAAGGAACCAAAGTTTTAAA
*
19160 AGAACTCGTAAAAAGCTTGACTAGTTCCA-AAGTTCGTCTAAGAACCAA-AGGAGAAACAATTCT
126 AGAACTCGT-AAAAGCTTGACAAGTT-CAGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCT
* ** * *
19223 CACGTAAATAAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACC
188 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACC
* * * * * * * * * *
19288 AAAAGACG-CAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGA
252 AAATGATGTGATTTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-CTTGA
* * * * * *
19352 ATACTTTAAGGAACCCAAGTTATAAAATAACTCGTAACAGTTTTACAAGTTTAGTAGTTCGTCCA
315 ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCA
* * * * *
19417 AGAATCAAGAGAGAGACAATTTTCACATAAATAAGTTTATAGTTCAAAG
380 AGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * * *
19466 ACCAAAAGTTGTTTACAGAATGACAAACTATTTAGACCAAAAGATTCGATTTCCAGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCC-GAGCATGGAA
* * *
19531 TGTTCGAAAATTGCTCGATGAAGTGGATCACTTATGTATAATACACTTCAAGGAACCAAAGTTTT
65 TGTTCGAATATTGCTCGAAGAA-TGGATCACTT-TG---AAT--ACTTTAAGGAACCAAAGTTTT
* * * * * * *
19596 AAAAGAACTTGTAAAAGTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAAATCC
123 AAAAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT
* * * *
19661 CACGTCAGTAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACT-TTTCAGATC
188 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT-AGACC
* * * * * * *
19725 AAATGTTGTGATTTTCCAAACATTGAATGTTCGAAAAATTTG-TAGAAGGAATGGATCGCATAGG
252 AAATGATGTGATTTTCCGAGCATGGAATGTTCGAAAAA-TTGCTCGAAGGAATGGATCGC-TTGA
* * * * * *
19789 ATGCTTTAAGGAACCTAAGTTATGAATGAACTCGCAAAAGTTTGACAAGTTCAGAAGTTCATCCA
315 ATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCA
*
19854 AGAACAAAGAGAGAAACAATTCTCACGA-AAATAAGTTTTTAATTCAAAG
380 AGAACCAAGAGAGAAACAATTCTCAC-ATAAATAAGTTTTTAATTCAAAG
* *
19903 ACCAAAAGTTGTTTACAAAATGACAAAATATTTAGACCGAATGATGCGATTTCTTGAGCATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGAA
* * * * ** * *
19968 TGTTTGGAATATTGCTTGAAAGAATGGATCGCCTTGACCACTTTAAGGAACCAATGTTATAAAAG
65 TG-TTCGAATATTGCTCG-AAGAATGGATCACTTTGAATACTTTAAGGAACCAAAGTTTTAAAAG
* * *
20033 AACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAACTCTCATGT
128 AACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGT
* * *
20098 AAATAAGTTTTTAATTCAAAGGCCAAAAGTTGTTTTCAAAATGACAAACTATTTAGACCAAGTGA
193 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * *
20163 TG-CAATTCCTCGAGCATGGAATGTTC-ATAAAATTGCTTGAAGAAATGGATCGTCTTGAATACT
258 TGTGATTTTC-CGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATCG-CTTGAATACT
* * * * ** *
20226 GTAAGG-ACCGAAGTTATAACAGAAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAGAA
320 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAA
* * * *
20289 CCAAGAGACAAACAATT-TACACATAAACAAGTATTTAATTCAATG
384 CCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAAG
* * * * *
20334 ACCAAAAGTTTTTTTACGAAAT-AGCAAACTATTTTGACCGAATGATGCGATTTCTTGAGCATGT
1 ACCAAAAG-TTGTTTACAAAATGA-CAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGG
* * *
20398 AATGTTCGGAATATTGCTCGAAGGATTGGATCA-TCTTGAATACTCTAAGGAACCGAAGTTATTA
63 AATGTTC-GAATATTGCTCGAA-GAATGGATCACT-TTGAATACTTTAAGGAACCAAAGTT-TTA
* * * * *
20462 TAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGATT-GTCTAAGTATCAAAAGAG-AACTAAT
124 -A-AAGAACTCGTAAAAGCTTGACAAGTTCAGAAG-TTCGTCTAAGAACCAAGAGAGAAAC-AAT
* *
20525 TCTCACGTAAATATA-TTTTTAATTCAAAGGCCAAAAAGTTGTTTGCAAAATGACAAACTATTTA
185 TCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTA
* * * * * * * *
20589 GACCGAATGATCCT-ATTTCCCGAGCATGGAATGTTCGGAATATTGATTGAAGGAATCGATCGCA
248 GACCAAATGAT-GTGATTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGC-
* * * * * * *
20653 TAGAATGCTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCA
311 TTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCG
* * ** *
20718 TCCAAGAGCTAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGG
376 TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * * * *
20771 ACCAACAGTTCTTTACAAAATGACAAAATATTTAGACCGAATGATGCTATTTCTCGAACATGGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGAA
* * * ** * *
20836 TGTTTGGAATATTGCTTGAAAGAATGGATCGCCATGAATACTTTAAGGAACCAATGTTATAAAAG
65 TG-TTCGAATATTGCTCG-AAGAATGGATCACTTTGAATACTTTAAGGAACCAAAGTTTTAAAAG
* * * * * *
20901 AACTCGTAAAAGCTTGAAAAGGTCAGAGGTTCGTCTAAGATCTAAGCGAGAAACAATTCTCACGT
128 AACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGT
* **
20966 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTACTTAGACCATGTGA
193 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * *
21031 TG-CAATTTCTCGAGCATGGAATGTTCGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTT
258 TGTGATTTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTT
* * * * * **
21095 TAAGGAACCGAAGTTATAACAGAAATAGTAAAAGCTTT-CCTAGTTC-GAAAGTTATTCCAAGAA
321 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAG-TTTGACAAGTTCAG-AAGTTCGTCCAAGAA
* * **
21158 CCAAGAGAGAAATAATT-TACACATAAATAAGTATTTAATTCAGTG
384 CCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAAG
* * ** * *
21203 ACCAAGAGGTTTTTTTATGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGG
1 ACCAA-AAG-TTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTT-CCGAGCATGG
* * * * *
21268 AATGTTCGGAATATTTCTTCGAGGATTGGATCA-TCTTGAATAATTAATTTAAGGAACCGAAGTT
63 AATGTTC-GAATATTGC-TCGAAGAATGGATCACT-TTG---AA-TACTTTAAGGAACCAAAGTT
* * * * * * * *
21332 ATTATAGAAGAAATAGTAAAAGTTTGACAAGTTTAGAAGTTTGTCTAAGAATCAAAAGAGAAATA
121 -TTA-A-AAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACA
* * *
21397 ATTCTCACATAAATATA-TTTTTAACTCAAAGACCAAAAAGTTGTTTGCAAAATGACAAACTATT
183 ATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATT
* * * * *
21461 TAGACCGAATGATGCT-ATTTCCCGAGCATGGAATGTTC-AGAATATTGATCGAAGGAATGGACC
246 TAGACCAAATGATG-TGATTTTCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAATGGATC
* * *
21524 GTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACTAGTTCAGAAG
309 G-CTTGAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAG
* * * **
21589 TTCGTCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGAAG
372 TTCGTCCAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * * * *
21646 ACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGCAATTTCTCGAGCATGGA
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGA
* * * * ** * *
21711 ATGTTTGGAAAATTGCTCGTAGAAACGGAT-GGTCTTGAATACTTTAAGGAACCCAAGTTATAAA
64 ATG-TTCGAATATTGCTCGAAG-AATGGATCACT-TTGAATACTTTAAGGAACCAAAGTTTTAAA
* * * * * * * ** *
21775 ATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTCATCCAAGAACCAAGAGAGTGACAATTTTCAC
126 AGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCAC
* * * * *
21840 ATAAATGAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTACTTAGACCAAAA
191 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * * **
21905 GAT-TCGA-TTTCGGGAGAACGGAATGTTCG-AAAATTGCTCG-ATGAAGTGGATCATTTATATA
256 GATGT-GATTTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAA-TGGATC---GCT-T-
* * * * * * *
21966 TAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTCCTGAGGTTCG
313 GAAT--ACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCG
** * * * * * *
22031 TCCAAGAACCAAGACTGAAACAAATCCCACGTCAGTAGGTTTTTAATTCAAAG
376 TCCAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * *
22084 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATTCGATTTCCGGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCC-GAGCATGGAA
* * * * * * **
22149 TGTTCGAAAATTACTCGATGAAGTGGATCATTTATATACAATACACTTCAAGGAACCCGAGTTTT
65 TGTTCGAATATTGCTCGAAGAA-TGGATCA-CT-T-T-GAAT--ACTTTAAGGAACCAAAGTTTT
* * * * * * *
22214 AAAAGAACTTGTATAAGATTGACAAG-TCAAGAGGTTCGTCCAAGAACCAAGAGAGAACCAAATC
123 AAAAGAACTCGTAAAAGCTTGACAAGTTC-AGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTC
* * * * *
22278 CCACGTCAATAAGTTTTTAATACAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT-GTAT
187 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG-AC
* * * * * * *
22342 CAAATGATGCGATTTTCTGAACATTGAATGTTCGAAAAATT-CGTAGAAGGAATGTATCGCATAG
251 CAAATGATGTGATTTTCCGAGCATGGAATGTTCGAAAAATTGC-TCGAAGGAATGGATCGC-TTG
* * * * * *
22406 GATGCTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG-TCAATC
314 AATACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-GTC
* * * * *
22470 CAAGAGCTAAGAGAGAAACAATTCTCACGTAAATAAGTTTATAATCCAAAG
378 CAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * *
22521 ACCAAAAGCTGTTTACAAAATGACAAAATATTTAGACCGAATGATACGATTTCTCGAGCATGGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGAA
* * * * * * *
22586 TGTTTGGAATATTGGTTGAAAGAATGGATCGCCTTGAATACTTTAAGGAACCAATGTTATAAAAG
65 TG-TTCGAATATTGCTCG-AAGAATGGATCACTTTGAATACTTTAAGGAACCAAAGTTTTAAAAG
* * * *
22651 AACTCGTAAAAGCTTGAAAAGTTCAGAAGTTTGTCTAAGAACCAAAAGAGAATCAATTCTCACGT
128 AACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGT
* *
22716 AAATAAGTTTTTAATTCAACGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAGTGA
193 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
** * * * *
22781 T-ACAATTTCTCGAGCATGGAATGTTCGTAAAATTGCTCGAAGAAATGGATCATCTTGAATACTT
258 TGTGATTTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTT
* * * ** *
22845 TAAGGAACCGAAGTTATAACAGAAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAGAAC
321 TAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAAC
* **
22909 CAAGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAGTG
385 CAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAAG
* * * *
22953 ACCAAAAGTTTTTTTACGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGA
1 ACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTT-CCGAGCATGGA
* *
23018 ATGTTCGGAATATTGCTCGAAGGATTGGATCA-TCTTGAATACTTTAAGGAACCGAAGTTATTAT
64 ATGTTC-GAATATTGCTCGAA-GAATGGATCACT-TTGAATACTTTAAGGAACCAAAGTT-TTA-
* * * * * *
23082 AGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTT-TTCCTAAGAATCAAAAGAGAAATAATTC
124 A-AAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGT-CTAAGAACCAAGAGAGAAACAATTC
* * *
23146 TCACATAAATATA-TTTTTAACTCAAAGACCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGA
187 TCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * * * * *
23210 CCGAATGATGCT-ATTTCCCGAGCATGGAATGTTTGGAATATTGATCGAAGGAATGAATTGTCTT
250 CCAAATGATG-TGATTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-CTT
* * * * *
23274 GAATACTTTAAGGAATCAAAGTTTTAAAAGAACTCGTAAAAAGCTTGACTAGTTCAGAAGTTCGT
313 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGT
* * ***
23339 CTAAGAACCAA-ATGAGAAACAATTCTCACATAAATAAGTTTTTAGTTTGGAG
377 CCAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * * * *
23391 ACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGCAATTTCTCGAGCATGGA
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGA
* * * * * * * * *
23456 ATGTTTGGAAAATTGCTCGTAAAAAAGGATCA-TCTTGAGTACTGTAAGGAACCGAAGTTATAAC
64 ATG-TTCGAATATTGCTCG-AAGAATGGATCACT-TTGAATACTTTAAGGAACCAAAGTTTTAAA
* * * ** * * * *
23520 AGAAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAGAACCAAGAGATAAACAA-TAT-A
126 AGAACTCGTAAAAGCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCA
* * ** * * * * *
23582 C--ACATAAGTATTTAATTCAGTGACCAATAGTTTTTTTACGAAATGGA-AAACTATTTTGACCG
190 CGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAAT-GACAAACTATTTAGACCA
* * *
23644 AATGAT-TCGATTTCCCGAGCATGGAATGTTC-AGAATATTGCTCGAA-GAATTGGATCATCTTG
253 AATGATGT-GATTTTCCGAGCATGGAATGTTCGA-AAAATTGCTCGAAGGAA-TGGATC-GCTTG
* * * * * *
23706 AATACTTTATGGAACCGAAGTTATTATAGACGAAATAGTACAAGTTTGACAAGTTCAGAAGTTTG
314 AATACTTTAAGGAACCGAAGTTA-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCG
* * * *
23771 -CCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATA-TTTTTAACTCAAAG
376 TCC-AAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTTTTTAATTCAAAG
* * *
23824 ACCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGACGCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTT-CCGAGCATGGA
* * *
23889 ATGTTGGGAATATTGATCGAAGGAATGGA-C-CGTCTTGAATACTTTAAGGAACCAAAGTTTTGA
64 ATGTT-CGAATATTGCTCGAA-GAATGGATCAC-T-TTGAATACTTTAAGGAACCAAAGTTTTAA
* * * *
23952 AAGAACTCGTAAAAAGCTTGACTAGTTTAGAATTTCGTCTAAGAACCAAAAGAGAAACAATTCTC
125 AAGAACTCGT-AAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTC
* * ** * * *
24017 ACGTGAATAAGTTTTTAGTTTGAGGACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCA
189 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCA
* * * * * * * * * ** *
24082 AAAGACG-CAATTTCTAGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAACAGATGGTCTTGAA
253 AATGATGTGATTTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-CTTGAA
* * * * * *
24146 TACTTTAAGGAACCCAAGTTATAAAATAACTCGTAAAGGTTTTACAAGTTCGGTAGTTCGTCCAA
316 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* * *
24211 GAACCAAGAGAGGAATAATTTTCACATAAATAAGTTTTTAATTCAAAG
381 GAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * * * *
24259 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATTCCATTTCTGGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGAA
* * * * * *
24324 TGTTCGAAAATTGCTCGATGAAGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTT
65 TGTTCGAATATTGCTCGAAGAA-TGGATCA-CT-T-T-GAAT--ACTTTAAGGAACCAAAGTTTT
* * * * * * * * * *
24389 AAAAGAACTTGTCAAAGTTTGACAAGTCCGGAGGTTCGTCCAAGAACCAAGAGAGAAAGAAATCC
123 AAAAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT
* * *
24454 CACGTCAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTTAGATCA
188 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCA
* * * * * * *
24519 AATGATGCGTTTTTCCGAACATTGAATGTTTGAAAAATTTG-TAGAAGGAATGGATCGCATAGAA
253 AATGATGTGATTTTCCGAGCATGGAATGTTCGAAAAA-TTGCTCGAAGGAATGGATCGC-TTGAA
* * * * * * * **
24583 TGCTTTAAGGAACCTAAGTTATGAATGAACTCATAAAAGTTTAACAAGTTCGGAAGTTTATCCAA
316 TACTTTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAA
* *
24648 GAACTAAGAGAGAAACAATTCTCA-ACTAAAAAAGTTTTTAATTCAAAG
381 GAACCAAGAGAGAAACAATTCTCACA-TAAATAAGTTTTTAATTCAAAG
* **
24696 ACCAAAAGTTGTTTACAAAATGACAAAATATTTAGATGGAATGATGCGATTTCTCGAGCATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGAA
* * * * * * *
24761 TGTTTGGAATATTGCTTGAAAGAATGGATCTCCTTGAATACTTAAAGGAACCAAAGTTATAAAAT
65 TG-TTCGAATATTGCTCG-AAGAATGGATCACTTTGAATACTTTAAGGAACCAAAGTTTTAAAAG
* *
24826 AACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCT------------------AA-TCCCACGT
128 AACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGT
* ** * *
24872 AAATAAGTTTTTAATTCAAAGATCAAAAGTTGTTTACAAAATGACAAAGGATTTAGACCGAGTGA
193 AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGA
* * * * *
24937 TG-CAATTTCTCGAGCATGGAATGTTCGCAAAATTGTTCG-AGGAAATGGATCATCTTGAATACT
258 TGTGATTTTC-CGAGCATGGAATGTTCGAAAAATTGCTCGAAGG-AATGGATC-GCTTGAATACT
* * * * ** * *
25000 TTAAGGAACCAAAGTTATAACAGAAATAGTAAAAGTTTTCCTAGTT-TGAAAGTTCGTCCAAGAA
320 TTAAGGAACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAA
* **
25064 CCAAGAGAGAAACAATT-TACACATAAATAAGTATTTAATTCAGTG
384 CCAAGAGAGAAACAATTCT-CACATAAATAAGTTTTTAATTCAAAG
* ** * * *
25109 ACCAAAAGTTTTTTATGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTT-CCGAGCATGGAA
* * *
25174 TGTTAGGAATATTGCTCGAAGGATTGGATCA-TCTTGAATACTTTAAGGAACCGAAGTTATTATA
65 TGTT-CGAATATTGCTCGAA-GAATGGATCACT-TTGAATACTTTAAGGAACCAAAGTT-TTA-A
* * * * ** * *
25238 GAAGAAATAGAAAAAGCTTGACAAGTTCAGAAGTT-TTCCTAAGAATTAAAAGAGAAATAATTCT
125 -AAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGT-CTAAGAACCAAGAGAGAAACAATTCT
* * * *
25302 CACATAAATATA-TTTTTAACTT-GAAGACCAAAAAGTTGTTTGCAAAATGAAAAACTATTTAGA
188 CACGTAAATA-AGTTTTTAA-TTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * ** *
25365 CCGAATGATGCT-ATTTCCCGAGCATGGAATGTTCGGAATATTAATCGATGGAATGGATCGTCTT
250 CCAAATGATG-TGATTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCG-CTT
* * * * *
25429 GAATACTTTAAGGAACCAAAGTTATTAAAGAACTCGTAAAAAGCTTGACTAGTCCAGAAGTTCGT
313 GAATACTTTAAGGAACCGAAGTTATAAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGT
* * * ** **
25494 CTAAGAACCAA-AGGAGAAACAATTCTCACGTACATAAGTTTTTGGTTTGAAG
377 CCAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
* * * * * * *
25546 ACCAAAACTTGGTTTTCAAAATGACAAACCATTTAGACCAAAAGACGCAATTTCTCGAGCATGGA
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTC-CGAGCATGGA
* * * * ** ** * * * *
25611 ATGTTTGGAAAATTGCTCGTAGAAACGGAT-GGTCTTGAATGTTTTAATGAACCCAAGGTATAAA
64 ATG-TTCGAATATTGCTCGAAG-AATGGATCACT-TTGAATACTTTAAGGAACCAAAGTTTTAAA
* * * * * * * * * * *
25675 ATAACTAGTAAAAGTTTTACAAGTTCGGTAGCTCGTCCAAGAACCAAGAGAGAGACAATTTTTAC
126 AGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCAC
* * * *
25740 ATAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGTCCAAAA
191 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAT
* * * *
25805 GATTTGATTTTCAGAGAATGGAATGTTCG-AAAATTTCTCGA
256 GATGTGATTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGA
25846 TGAAGTGGAT
Statistics
Matches: 5488, Mismatches: 1051, Indels: 554
0.77 0.15 0.08
Matches are distributed among these distances:
412 16 0.00
413 286 0.05
414 7 0.00
415 2 0.00
416 31 0.01
429 1 0.00
430 11 0.00
431 221 0.04
432 773 0.14
433 410 0.07
434 378 0.07
435 441 0.08
436 521 0.09
437 971 0.18
438 804 0.15
439 119 0.02
440 4 0.00
441 85 0.02
442 316 0.06
443 85 0.02
444 6 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (428 bp):
ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCGAGCATGGAAT
GTTCGAATATTGCTCGAAGAATGGATCACTTTGAATACTTTAAGGAACCAAAGTTTTAAAAGAAC
TCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAA
TAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGT
GATTTTCCGAGCATGGAATGTTCGAAAAATTGCTCGAAGGAATGGATCGCTTGAATACTTTAAGG
AACCGAAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACCAAGAG
AGAAACAATTCTCACATAAATAAGTTTTTAATTCAAAG
Found at i:19891 original size:216 final size:215
Alignment explanation
Indices: 18596--25845 Score: 6151
Period size: 216 Copynumber: 33.4 Consensus size: 215
18586 TGGCCGTATC
** * *
18596 ACCAAAAGTTGTTTACAAAATGACAAACTACATAGACCAAGTGATGC-AATTTCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * *
18660 ATGTTCGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAACA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAA-A
* * ** * *
18725 A-AAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAG-ACCAAGAGAGAAACAATT-TAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT-C
* * **
18786 ACTTAAATAAGTATTTAATTCAGTG
191 ACGTAAATAAGTTTTTAATTCAAAG
* * * * * * *
18811 ACCAAAAGTTTTTTTACGAAATGGCAAACTATTTTGACCGAATGATGC-AATTTCTCGAGCATGC
1 ACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGG
* * * **
18875 AATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAATTGAAGTTATTAT
64 AATGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-
* * * * *
18940 AGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGATT-GTCTAAGTATCAAA-AGAG-AACTAAT
126 A-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTCGTCCAAG-AACAAAGAGAGAAAC-AAT
19002 TCTCACGTAAATATA-TTTTTAATTCAAAG
187 TCTCACGTAAATA-AGTTTTTAATTCAAAG
* * * * * *
19031 GCCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATCCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* * * * *
19096 ATGTTCGGAATATTGATTGAAGGAATGGATCGTCTTGAATACTTTAGGGAACCAAAGTTATAAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * *
19161 GAACTCGTAAAAAGCTTGACTAGTTCCA-AAGTTCGTCTAAGAACCAAAG-GAGAAACAATTCTC
129 GAACTCGT-AAAAGTTTGACAAGTT-CAGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTC
* **
19224 ACGTAAATAAGTTTTTAGTTTGAAG
191 ACGTAAATAAGTTTTTAATTCAAAG
* * * * *
19249 ACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGC-AATTTCTCGAGCATGG
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGG
* * * * * *
19313 AATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATACTTTAAGGAACCCAAGTTATAAA
64 AATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * * * * *
19378 ATAACTCGTAACAGTTTTACAAGTTTAGTAGTTCGTCCAAGAATC-AAGAGAGAGACAATTTTCA
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTCA
* * *
19442 CATAAATAAGTTTATAGTTCAAAG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * *
19466 ACCAAAAGTTGTTTACAGAATGACAAACTATTTAGACCAAAAGATTCGA-TTTCCAGAGAATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCC-GAGCATGGA
* * * *
19530 ATGTTC-GAAAATTGCTCG-ATGAAGTGGATCACTTATGTATAATACACTTCAAGGAACCAAAGT
65 ATGTTCGGAAAATTGCTCGAAGGAA-TGGATCGC-T-TG---AAT--ACTTTAAGGAACCGAAGT
* * * * * *
19593 TTTAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAACAAA
122 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * *
19658 TCCCACGTCAGTAAGTTTTTAATTCAAAG
187 TCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * * * *
19687 ACCAAAAGTTGTTCACAAAATGACAAACT-TTTCAGATCAAATGTTGTGATTTTCCAAACATTGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTT-AGACCAAATGATGCGATTTTCCGAGCATGGA
* * * * * * *
19751 ATGTTCGAAAAATTTG-TAGAAGGAATGGATCGCATAGGATGCTTTAAGGAACCTAAGTTATGAA
65 ATGTTCGGAAAA-TTGCTCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACCGAAGTTATAAA
* * *
19815 TGAACTCGCAAAAGTTTGACAAGTTCAGAAGTTCATCCAAGAACAAAGAGAGAAACAATTCTCAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
*
19880 GAAAATAAGTTTTTAATTCAAAG
193 GTAAATAAGTTTTTAATTCAAAG
* * *
19903 ACCAAAAGTTGTTTACAAAATGACAAAATATTTAGACCGAATGATGCGA-TTTCTTGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * * **
19967 ATGTTTGGAATATTGCTTGAAAGAATGGATCGCCTTGACCACTTTAAGGAACC-AATGTTATAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAA
* * * * * *
20031 AGAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAACTCTCAT
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
20096 GTAAATAAGTTTTTAATTCAAAG
193 GTAAATAAGTTTTTAATTCAAAG
* * * * *
20119 GCCAAAAGTTGTTTTCAAAATGACAAACTATTTAGACCAAGTGATGC-AATTCCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
** * * * *
20183 ATGTTCATAAAATTGCTTGAAGAAATGGATCGTCTTGAATACTGTAAGG-ACCGAAGTTATAACA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * ** * * *
20247 GAAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAGAACCAAGAGACAAACAATT-TACA
129 GAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT-CA
* * * *
20310 CATAAACAAGTATTTAATTCAATG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * * *
20334 ACCAAAAGTTTTTTTACGAAAT-AGCAAACTATTTTGACCGAATGATGCGA-TTTCTTGAGCATG
1 ACCAAAAG-TTGTTTACAAAATGA-CAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATG
* * * * *
20397 TAATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTCTAAGGAACCGAAGTTATTA
63 GAATGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA
* * * * *
20462 TAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGATT-GTCTAAGTATCAAA-AGAG-AACTAA
126 -A-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTCGTCCAAG-AACAAAGAGAGAAAC-AA
20524 TTCTCACGTAAATATA-TTTTTAATTCAAAG
186 TTCTCACGTAAATA-AGTTTTTAATTCAAAG
* * * * * *
20554 GCCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATCCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* * * * * * * *
20619 ATGTTCGGAATATTGATTGAAGGAATCGATCGCATAGAATGCTTTAAGGAACCTAAGTTATGAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * * *
20684 GAACTCGTAAAAGTTTGACAAGTTCGGATGTTCATCCAAGAGCTAAGAGAGAAACAATTCTCATG
129 GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
*
20749 TAAATAAGTTTTTAATTCAAGG
194 TAAATAAGTTTTTAATTCAAAG
* * * * * * *
20771 ACCAACAGTTCTTTACAAAATGACAAAATATTTAGACCGAATGATGCTA-TTTCTCGAACATGGG
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * * *
20835 ATGTTTGGAATATTGCTTGAAAGAATGGATCGCCATGAATACTTTAAGGAACC-AATGTTATAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAA
* * * * * * * *
20899 AGAACTCGTAAAAGCTTGAAAAGGTCAGAGGTTCGTCTAAGATCTAAGCGAGAAACAATTCTCAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
20964 GTAAATAAGTTTTTAATTCAAAG
193 GTAAATAAGTTTTTAATTCAAAG
* ** *
20987 ACCAAAAGTTGTTTACAAAATGACAAACTACTTAGACCATGTGATGC-AATTTCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * *
21051 ATGTTCGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAACA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * ** * *
21116 GAAATAGTAAAAGCTTT-CCTAGTTC-GAAAGTTATTCCAAGAACCAAGAGAGAAATAATT-TAC
129 GAACTCGTAAAAG-TTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT-C
* * **
21178 ACATAAATAAGTATTTAATTCAGTG
191 ACGTAAATAAGTTTTTAATTCAAAG
* * ** * * * *
21203 ACCAAGAGGTTTTTTTATGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGG
1 ACCAA-AAG-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGG
* * * * *
21268 AATGTTCGGAATATTTCTTCG-AGGATTGGATCATCTTGAATAATTAATTTAAGGAACCGAAGTT
64 AATGTTCGGAAAATTGC-TCGAAGGAATGGATC-GCTTG---AA-TACTTTAAGGAACCGAAGTT
* * * * * *
21332 ATTATAGAAGAAATAGTAAAAGTTTGACAAGTTTAGAAGTTTGTCTAAGAATCAAA-AGAGAAAT
123 A-TA-A-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAAGAGAGAAAC
* *
21396 AATTCTCACATAAATATA-TTTTTAACTCAAAG
184 AATTCTCACGTAAATA-AGTTTTTAATTCAAAG
* * * *
21428 ACCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATGCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* * * * *
21493 ATGTTCAGAATATTGATCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * *
21558 GAACTCGTAAAAAGCTTGACTAGTTCAGAAGTTCGTCTAAGAACCAAAG-GAGAAACAATTCTCA
129 GAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTCA
* **
21622 CGTAAATAAGTTTTTAGTTTGAAG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * * *
21646 ACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGC-AATTTCTCGAGCATGG
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGG
* * * * * *
21710 AATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATACTTTAAGGAACCCAAGTTATAAA
64 AATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * * * * ** *
21775 ATAACTCGTAAAAGTTTTACAAGTTCGGTAGTTCATCCAAGAACCAAGAGAGTGACAATTTTCAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
* *
21840 ATAAATGAGTTTTTAATTCAAAG
193 GTAAATAAGTTTTTAATTCAAAG
* * * * * * *
21863 ACCAAAAGTTGTTTACAAAATGAAAAACTACTTAGACCAAAAGATTCGA-TTTCGGGAGAACGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* ** * *
21927 ATGTTC-GAAAATTGCTCG-ATGAAGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGT
65 ATGTTCGGAAAATTGCTCGAAGGAA-TGGATC---GCT-T-GAAT--ACTTTAAGGAACCGAAGT
* * * * * * ** *
21990 TTTAAAAGAACTTGTAAAAGTTTGACAAGTCCTGAGGTTCGTCCAAGAACCAAGACTGAAACAAA
122 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* * * *
22055 TCCCACGTCAGTAGGTTTTTAATTCAAAG
187 TCTCACGTAAATAAGTTTTTAATTCAAAG
* * *
22084 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATTCGA-TTTCCGGAGAATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCC-GAGCATGGA
* * * *
22148 ATGTTC-GAAAATTACTCG-ATGAAGTGGATC-ATTTATATACAATACACTTCAAGGAACCCG-A
65 ATGTTCGGAAAATTGCTCGAAGGAA-TGGATCGCTTGA-ATAC--T----TT-AAGGAA-CCGAA
* * * * * * *
22209 GTTTTAAAAGAACTTGTATAAGATTGACAAG-TCAAGAGGTTCGTCCAAGAACCAAGAGAGAACC
120 GTTATAAAAGAACTCGTAAAAGTTTGACAAGTTC-AGAAGTTCGTCCAAGAACAAAGAGAGAAAC
* * * *
22273 AAATCCCACGTCAATAAGTTTTTAATACAAAG
184 AATTCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * *
22305 ACCAAAAGTTGTTCACAAAATGACAAACTATTT-GTATCAAATGATGCGATTTTCTGAACATTGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAG-ACCAAATGATGCGATTTTCCGAGCATGGA
* * * * * * * *
22369 ATGTTCGAAAAATT-CGTAGAAGGAATGTATCGCATAGGATGCTTTAAGGAACCTAAGTTATGAA
65 ATGTTCGGAAAATTGC-TCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACCGAAGTTATAAA
* * * *
22433 AGAACTCGTAAAAGTTTGACAAGTTCGGAAG-TCAATCCAAGAGCTAAGAGAGAAACAATTCTCA
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-GTCCAAGAACAAAGAGAGAAACAATTCTCA
* *
22497 CGTAAATAAGTTTATAATCCAAAG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * * *
22521 ACCAAAAGCTGTTTACAAAATGACAAAATATTTAGACCGAATGATACGA-TTTCTCGAGCATGGG
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * * *
22585 ATGTTTGGAATATTGGTTGAAAGAATGGATCGCCTTGAATACTTTAAGGAACC-AATGTTATAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAA-GTTATAAA
* * * * *
22649 AGAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTTGTCTAAGAACCAAA-AGAGAATCAATTCTCA
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTCA
*
22713 CGTAAATAAGTTTTTAATTCAACG
192 CGTAAATAAGTTTTTAATTCAAAG
* * *
22737 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAGTGATAC-AATTTCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * *
22801 ATGTTCGTAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATAACA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * ** * *
22866 GAAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TACA
129 GAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT-CA
* * **
22929 CATAAATAAGTATTTAATTCAGTG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * * * *
22953 ACCAAAAGTTTTTTTACGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGA
1 ACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* * *
23018 ATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A
* * * * *
23083 GAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTT-TTCCTAAGAATCAAA-AGAGAAATAATTC
127 -AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCC-AAGAA-CAAAGAGAGAAACAATTC
* *
23146 TCACATAAATATA-TTTTTAACTCAAAG
189 TCACGTAAATA-AGTTTTTAATTCAAAG
* * * *
23173 ACCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATGCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* * * * * * * *
23238 ATGTTTGGAATATTGATCGAAGGAATGAATTGTCTTGAATACTTTAAGGAATCAAAGTTTTAAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * *
23303 GAACTCGTAAAAAGCTTGACTAGTTCAGAAGTTCGTCTAAGAACCAAA-TGAGAAACAATTCTCA
129 GAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTCA
* * ***
23367 CATAAATAAGTTTTTAGTTTGGAG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * * *
23391 ACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGC-AATTTCTCGAGCATGG
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGG
* * * * * *
23455 AATGTTTGGAAAATTGCTCGTAA-AAAAGGATCATCTTGAGTACTGTAAGGAACCGAAGTTATAA
64 AATGTTCGGAAAATTGCTCG-AAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * ** * * * *
23519 CAGAAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAGAACCAAGAGATAAACAA-TAT-
127 AAGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC
* * **
23581 AC--ACATAAGTATTTAATTCAGTG
191 ACGTAAATAAGTTTTTAATTCAAAG
* * * * * * *
23604 ACCAATAGTTTTTTTACGAAATGGA-AAACTATTTTGACCGAATGATTCGATTTCCCGAGCATGG
1 ACCAAAAG-TTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGG
* * * *
23668 AATGTTCAGAATATTGCTCGAA-GAATTGGATCATCTTGAATACTTTATGGAACCGAAGTTATTA
64 AATGTTCGGAAAATTGCTCGAAGGAA-TGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA
* * * * * *
23732 TAGACGAAATAGTACAAGTTTGACAAGTTCAGAAGTTTG-CCTAAGAATCAAA-AGAGAAATAAT
126 -A-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCC-AAGAA-CAAAGAGAGAAACAAT
* *
23795 TCTCACATAAATATA-TTTTTAACTCAAAG
187 TCTCACGTAAATA-AGTTTTTAATTCAAAG
* * * * *
23824 ACCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGACGCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* * * * * * *
23889 ATGTTGGGAATATTGATCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAAGTTTTGAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * *
23954 GAACTCGTAAAAAGCTTGACTAGTTTAGAATTTCGTCTAAGAACCAAA-AGAGAAACAATTCTCA
129 GAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTCA
* * ** *
24018 CGTGAATAAGTTTTTAGTTTGAGG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * * * *
24042 ACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGC-AATTTCTAGAGCATGG
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGG
* * * ** * *
24106 AATGTTTGGAAAATTGCTCGTAGAAACAGATGGTCTTGAATACTTTAAGGAACCCAAGTTATAAA
64 AATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * * * * * * *
24171 ATAACTCGTAAAGGTTTTACAAGTTCGGTAGTTCGTCCAAGAACCAAGAGAGGAATAATTTTCAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
*
24236 ATAAATAAGTTTTTAATTCAAAG
193 GTAAATAAGTTTTTAATTCAAAG
* * * * *
24259 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATTCCA-TTTCTGGAGAATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* ** * *
24323 ATGTTC-GAAAATTGCTCG-ATGAAGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGT
65 ATGTTCGGAAAATTGCTCGAAGGAA-TGGATC---GCT-T-GAAT--ACTTTAAGGAACCGAAGT
* * * * * * * * *
24386 TTTAAAAGAACTTGTCAAAGTTTGACAAGTCCGGAGGTTCGTCCAAGAACCAAGAGAGAAAGAAA
122 TATAAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAAT
* *
24451 TCCCACGTCAATAAGTTTTTAATTCAAAG
187 TCTCACGTAAATAAGTTTTTAATTCAAAG
* * * * *
24480 ACCAAAAGTTGTTCACAAAATGACAAACTATTTAGATCAAATGATGCGTTTTTCCGAACATTGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAA
* * * * * * * *
24545 TGTTTGAAAAATTTG-TAGAAGGAATGGATCGCATAGAATGCTTTAAGGAACCTAAGTTATGAAT
66 TGTTCGGAAAA-TTGCTCGAAGGAATGGATCGC-TTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * ** *
24609 GAACTCATAAAAGTTTAACAAGTTCGGAAGTTTATCCAAGAACTAAGAGAGAAACAATTCTCAAC
129 GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTC-AC
*
24674 -TAAAAAAGTTTTTAATTCAAAG
193 GTAAATAAGTTTTTAATTCAAAG
* ***
24696 ACCAAAAGTTGTTTACAAAATGACAAAATATTTAGATGGAATGATGCGA-TTTCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * * * * *
24760 ATGTTTGGAATATTGCTTGAAAGAATGGATCTCCTTGAATACTTAAAGGAACCAAAGTTATAAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * * *
24825 TAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCGT-------C-----------TAA-TCCCACG
129 GAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACG
24871 TAAATAAGTTTTTAATTCAAAG
194 TAAATAAGTTTTTAATTCAAAG
* ** * * *
24893 ATCAAAAGTTGTTTACAAAATGACAAAGGATTTAGACCGAGTGATGC-AATTTCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGGA
* * * * *
24957 ATGTTCGCAAAATTGTTCG-AGGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATAAC
65 ATGTTCGGAAAATTGCTCGAAGG-AATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTATAAA
* * ** * * *
25021 AGAAATAGTAAAAGTTTTCCTAGTT-TGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATT-TAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAGAACAAAGAGAGAAACAATTCT-C
* * **
25084 ACATAAATAAGTATTTAATTCAGTG
191 ACGTAAATAAGTTTTTAATTCAAAG
* ** * * * * *
25109 ACCAAAAGTTTTTTATGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAA
* * * *
25174 TGTTAGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAG
66 TGTTCGGAAAATTGCTCGAAGGAATGGATC-GCTTGAATACTTTAAGGAACCGAAGTTA-TA-A-
* * * * * * *
25239 AAGAAATAGAAAAAGCTTGACAAGTTCAGAAGTT-TTCCTAAGAATTAAA-AGAGAAATAATTCT
127 AAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCC-AAGAA-CAAAGAGAGAAACAATTCT
* *
25302 CACATAAATATA-TTTTTAACTT-GAAG
190 CACGTAAATA-AGTTTTTAA-TTCAAAG
* * * * *
25328 ACCAAAAAGTTGTTTGCAAAATGAAAAACTATTTAGACCGAATGATGCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGA
* ** * * *
25393 ATGTTCGGAATATTAATCGATGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATTAAA
65 ATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAAA
* * * *
25458 GAACTCGTAAAAAGCTTGACTAGTCCAGAAGTTCGTCTAAGAACCAAAG-GAGAAACAATTCTCA
129 GAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAA-CAAAGAGAGAAACAATTCTCA
* ** **
25522 CGTACATAAGTTTTTGGTTTGAAG
192 CGTAAATAAGTTTTTAATTCAAAG
* * * * * *
25546 ACCAAAACTTGGTTTTCAAAATGACAAACCATTTAGACCAAAAGACGC-AATTTCTCGAGCATGG
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTC-CGAGCATGG
* * * * * ** * * *
25610 AATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATGTTTTAATGAACCCAAGGTATAAA
64 AATGTTCGGAAAATTGCTCGAAGGAATGGATCG-CTTGAATACTTTAAGGAACCGAAGTTATAAA
* * * * * * * * * *
25675 ATAACTAGTAAAAGTTTTACAAGTTCGGTAGCTCGTCCAAGAACCAAGAGAGAGACAATTTTTAC
128 AGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCAC
*
25740 ATAAATAAGTTTTTAATTCAAAG
193 GTAAATAAGTTTTTAATTCAAAG
* * * ** * *
25763 ACTAAAAGTTGTTTACAAAATGACAAACTATTTAGTCCAAAAGATTTGATTTTCAGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAA
*
25828 TGTTC-GAAAATTTCTCGA
66 TGTTCGGAAAATTGCTCGA
25846 TGAAGTGGAT
Statistics
Matches: 5732, Mismatches: 1044, Indels: 518
0.79 0.14 0.07
Matches are distributed among these distances:
196 6 0.00
197 156 0.03
198 2 0.00
204 1 0.00
209 1 0.00
212 4 0.00
213 104 0.02
214 24 0.00
215 205 0.04
216 1919 0.33
217 628 0.11
218 926 0.16
219 141 0.02
220 690 0.12
221 668 0.12
222 75 0.01
223 26 0.00
224 80 0.01
225 68 0.01
226 8 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (215 bp):
ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCGATTTTCCGAGCATGGAA
TGTTCGGAAAATTGCTCGAAGGAATGGATCGCTTGAATACTTTAAGGAACCGAAGTTATAAAAGA
ACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAAGAGAGAAACAATTCTCACGTA
AATAAGTTTTTAATTCAAAG
Found at i:20652 original size:868 final size:862
Alignment explanation
Indices: 18596--25797 Score: 6830
Period size: 868 Copynumber: 8.3 Consensus size: 862
18586 TGGCCGTATC
** * *
18596 ACCAAAAGTTGTTTACAAAATGACAAACTACATAGACC-AAGTGATGCAATTTCTCGAGCATGGA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAA-TGATGCGATTTCCCGAGCATGGA
* * *
18660 ATGTTCGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTA-TAAC
65 ATGTTCGGAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATTAA-
* ** * * *
18724 AA-AAATAGTAAAAGTTTTCCTAGTTC-GAAAGTTCGTCCAAG-ACCAAGAGAGAAAC-AATT-T
129 AAGAAATAGTAAAAGCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAAAGAG-AACTAATTCT
* * ** * * * *
18784 ACACTTAAATAAGTATTTAATTCAGTGACCAAAAGTTTTTTTACGAAATGGCAAACTATTTTGAC
192 -CACGTAAATAAGTTTTTAATTCAAAGACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGAC
* * * * * *
18849 CGAATGATGCAATTTCTCGAGCATGCAATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGA
255 CGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAAAATTG-TCGAAGGAATGGATC-GCTTGA
* * * * *
18914 ATACTTTAAGGAA-TTGAAGTTATTATAGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGATT-
318 ATACTTTAAGGAACCT-AAGTTA-T-GA-AAGAACTCGTAAAAGTTTGACAAGTTCAGAAG-TTC
* * * *
18977 GTCTAAGTATCAAA-AGAG-AACTAATTCTCACGTAAATATA-TTTTTAATTCAAAGGCCAAAAA
378 GTCCAAG-AACAAAGAGAGAAAC-AATTCTCACGAAAATA-AGTTTTTAATTCAAAGACC-AAAA
* * * * *
19039 GTTGTTTGCAAAATGACAAACTATTTAGACCGAATGATCCTATTTCCCGAGCATGGAATGTTCGG
439 GTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGG
* * * *
19104 AATATTGATTGAAGGAATGGATCGTCTTGAATACTTTAGGGAACCAAAGTTATAAAAGAACTCGT
504 AATATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGT
*
19169 AAAAAGCTTGACTAGTTCCA-AAGTTCGTCTAAGAACCAA-AGGAGAAACAATTCTCACGTAAAT
568 -AAAAGCTTGACAAGTT-CAGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACGTAAAT
* ** * * * *
19232 AAGTTTTTAGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGC
630 AAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCAAATGATGC
* * * *
19297 AATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATACTTTAAG
694 AATTTCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAG
* * * * * * * * *
19362 GAACCCAAGTTATAAAATAACTCGTAACAGTTTTACAAGTT-TAGTAGTTCGTCCAAGAATCAAG
759 GAACCGAAGTTATAACAGAAATAGTAAAAGTTTTACAAGTTCGA-AAGTTCGTCCAAGAACCAAG
* * *
19426 AGAGAGACAATTTTCACATAAATAAGT-TTATAGTTCAAAG
823 AGAGAAACAATTTACACATAAATAAGTATT-TAATTCAAAG
* * * * * *
19466 ACCAAAAGTTGTTTACAGAATGACAAACTATTTAGACCAAAAGATTCGATTTCCAGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAA
* * *
19531 TGTTC-GAAAATTGCTCG-ATGAAGTGGATCA-CTTATGTATAATACACTTCAAGGAACCAAAGT
66 TGTTCGGAATATTGCTCGAAGGAA-TGGATCATC-T-TG---AAT--ACTTTAAGGAACCAAAGT
* * * * * * *
19593 T-TTAAAAGAACTTGTAAAAGTTTGACAAGTTCGGAGGTTCGTCCAAGAACCAAGAGAGAAAC-A
123 TATTAAAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAAAGAG-AACTA
* * * * *
19656 AATCCCACGTCAGTAAGTTTTTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACT-TTTC
187 ATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTT-
* * * * * * * * *
19720 AGATCAAATGTTG-TGATTTTCCAAACATTGAATGTTCGAAAAATTTGTAGAAGGAATGGATCGC
251 AGACCGAATGATGCT-ATTTCCCGAGCATGGAATGTTCGGAAAA-TTGTCGAAGGAATGGATCGC
* * * * *
19784 ATAGGATGCTTTAAGGAACCTAAGTTATGAATGAACTCGCAAAAGTTTGACAAGTTCAGAAGTTC
314 -TTGAATACTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC
*
19849 ATCCAAGAACAAAGAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
378 GTCCAAGAACAAAGAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAAGTTG
* *
19914 TTTACAAAATGACAAAATATTTAGACCGAATGATGCGATTTCTTGAGCATGGAATGTTTGGAATA
443 TTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATA
* * **
19979 TTGCTTGAAAGAATGGATCGCCTTGACCACTTTAAGGAACCAATGTTATAAAAGAACTCGTAAAA
508 TTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGTAAAA
* * *
20044 GCTTGAAAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAACTCTCATGTAAATAAGTTTT
572 GCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTT
* * * *
20109 TAATTCAAAGGCCAAAAGTTGTTTTCAAAATGACAAACTATTTAGACCAAGTGATGCAATTCCTC
637 TAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTC
** * *
20174 GAGCATGGAATGTTCATAAAATTGCTTGAAGAAATGGATCGTCTTGAATACTGTAAGG-ACCGAA
702 GAGCATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAA
* * *
20238 GTTATAACAGAAATAGTAAAAGTTTTCCTAGTTCGAAAGTTCGTCCAAGAACCAAGAGACAAACA
767 GTTATAACAGAAATAGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACA
* *
20303 ATTTACACATAAACAAGTATTTAATTCAATG
832 ATTTACACATAAATAAGTATTTAATTCAAAG
* * * ** *
20334 ACCAAAAGTTTTTTTACGAAAT-AGCAAACTATTTTGACCGAATGATGCGATTTCTTGAGCATGT
1 ACCAAAAG-TTGTTTACAAAATGA-CAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGG
* * *
20398 AATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTCTAAGGAACCGAAGTTATTAT
64 AATGTTCGGAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATTA-
* *
20463 AGAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGATT-GTCTAAGTATCAAAAGAGAACTAATTC
128 A-AAGAAATAGTAAAAGCTTGACAAGTTCAGAAG-TTCGTCTAAGAACCAAAAGAGAACTAATTC
* *
20527 TCACGTAAATATA-TTTTTAATTCAAAGGCCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGA
191 TCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGA
* * * * *
20591 CCGAATGATCCTATTTCCCGAGCATGGAATGTTCGGAATATTGATTGAAGGAATCGATCGCATAG
254 CCGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAAAATTG-TCGAAGGAATGGATCGC-TTG
* * * *
20656 AATGCTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCGGATGTTCATCC
317 AATACTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCC
* * * * * * *
20721 AAGAGCTAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAATTCAAGGACCAACAGTTCTTTA
382 AAGAACAAAGAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
* * * *
20786 CAAAATGACAAAATATTTAGACCGAATGATGCTATTTCTCGAACATGGGATGTTTGGAATATTGC
447 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGC
* * *
20851 TTGAAAGAATGGATCGCCATGAATACTTTAAGGAACCAATGTTATAAAAGAACTCGTAAAAGCTT
512 TCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGTAAAAGCTT
* * * * * *
20916 GAAAAGGTCAGAGGTTCGTCTAAGATCTAAGCGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
576 GACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAAT
* **
20981 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTACTTAGACCATGTGATGCAATTTCTCGAGC
641 TCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGC
* *
21046 ATGGAATGTTCGCAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTA
706 ATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
* * * ** *
21111 TAACAGAAATAGTAAAAGCTTTCCTAGTTCGAAAGTTATTCCAAGAACCAAGAGAGAAATAATTT
771 TAACAGAAATAGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTT
**
21176 ACACATAAATAAGTATTTAATTCAGTG
836 ACACATAAATAAGTATTTAATTCAAAG
* * ** * *
21203 ACCAAGAGGTTTTTTTATGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGG
1 ACCAA-AAG-TTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGG
* * * *
21268 AATGTTCGGAATATTTCTTCG-AGGATTGGATCATCTTGAATAATTAATTTAAGGAACCGAAGTT
64 AATGTTCGGAATATTGC-TCGAAGGAATGGATCATCTTG---AA-TACTTTAAGGAACCAAAGTT
* * * * *
21332 ATTATAGAAGAAATAGTAAAAGTTTGACAAGTTTAGAAGTTTGTCTAAGAATCAAAAGAGAAATA
124 ATTA-A-AAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAAAGAGAACTA
* * *
21397 ATTCTCACATAAATATA-TTTTTAACTCAAAGACCAAAAAGTTGTTTGCAAAATGACAAACTATT
187 ATTCTCACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATT
* * *
21461 TAGACCGAATGATGCTATTTCCCGAGCATGGAATGTTCAGAATATTGATCGAAGGAATGGACCGT
250 TAGACCGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAAAATTG-TCGAAGGAATGGATCG-
* * * *
21526 CTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCTTGACTAGTTCAGAAGTT
313 CTTGAATACTTTAAGGAACCTAAGTTATGAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAGTT
* * * ** *
21591 CGTCTAAGAACCAAAG-GAGAAACAATTCTCACGTAAATAAGTTTTTAGTTTGAAGACCAAAACT
377 CGTCCAAGAA-CAAAGAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAAGT
* * * * *
21655 TGGTTTTCAAAATGACAAACTATTTAGACCAAAAGACGCAATTTCTCGAGCATGGAATGTTTGGA
441 T-GTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGA
* * * * *
21720 AAATTGCTCG-TAGAAACGGATGGTCTTGAATACTTTAAGGAACCCAAGTTATAAAATAACTCGT
505 ATATTGCTCGAAAG-AATGGATCGTCTTGAATACTTTAAGGAA-CCAAGTTATAAAAGAACTCGT
* * * * * * ** * * *
21784 AAAAGTTTTACAAGTTCGGTAGTTCATCCAAGAACCAAGAGAGTGACAATTTTCACATAAATGAG
568 AAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAG
* * * * *
21849 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAAAAACTACTTAGACCAAAAGATTCGATT
633 TTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATT
** * * * * * * * *
21914 TCGGGAGAACGGAATGTTC-GAAAATTGCTCGATGAAGTGGATCATTTATATATAATACACTTCA
698 TCTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATC--GTCT-T-GAAT--ACTTTA
* * * * * * *
21978 AGGAACCGAAGTTTTAAAAGAACTTGTAAAAGTTTGACAAGTCCTG-AGGTTCGTCCAAGAACCA
757 AGGAACCGAAGTTATAACAGAAATAGTAAAAGTTTTACAAGTTC-GAAAGTTCGTCCAAGAACCA
** * ** * * * * *
22042 AGACTGAAACAAATCCCACGTCAGTAGGTTTTTAATTCAAAG
821 AGAGAGAAACAATTTACACATAAATAAGTATTTAATTCAAAG
* * * * *
22084 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAAAGATTCGATTTCCGGAGAATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAA
* * * * * * **
22149 TGTTC-GAAAATTACTCG-ATGAAGTGGATCATTTATATACAATACACTTCAAGGAACCCGAGTT
66 TGTTCGGAATATTGCTCGAAGGAA-TGGATCA--TCT-T-GAAT--ACTTTAAGGAACCAAAGTT
* * * * * * * *
22212 -TTAAAAGAACTTGTATAAGATTGACAAG-TCAAGAGGTTCGTCCAAGAACCAAGAGAGAACCAA
124 ATTAAAAGAAATAGTAAAAGCTTGACAAGTTC-AGAAGTTCGTCTAAGAACCAAAAGAGAACTAA
* * * * *
22275 ATCCCACGTCAATAAGTTTTTAATACAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTT-G
188 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
* * * * * * * * * *
22339 TATCAAATGATGCGATTTTCTGAACATTGAATGTTCGAAAAATTCGTAGAAGGAATGTATCGCAT
253 -ACCGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAAAATT-GTCGAAGGAATGGATCGC-T
* * * * *
22404 AGGATGCTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAG-TCAA
315 TGAATACTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTC-G
* * * * * *
22468 TCCAAGAGCTAAGAGAGAAACAATTCTCACGTAAATAAGTTTATAATCCAAAGACCAAAAGCTGT
379 TCCAAGAACAAAGAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAAGTTGT
* * *
22533 TTACAAAATGACAAAATATTTAGACCGAATGATACGATTTCTCGAGCATGGGATGTTTGGAATAT
444 TTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATAT
* * *
22598 TGGTTGAAAGAATGGATCGCCTTGAATACTTTAAGGAACCAATGTTATAAAAGAACTCGTAAAAG
509 TGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCAA-GTTATAAAAGAACTCGTAAAAG
* * * *
22663 CTTGAAAAGTTCAGAAGTTTGTCTAAGAACCAAAAGAGAATCAATTCTCACGTAAATAAGTTTTT
573 CTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
* * *
22728 AATTCAACGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAGTGATACAATTTCTCG
638 AATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCG
* *
22793 AGCATGGAATGTTCGTAAAATTGCTCGAAGAAATGGATCATCTTGAATACTTTAAGGAACCGAAG
703 AGCATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* *
22858 TTATAACAGAAATAGTAAAAGTTTTCCTAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAA
768 TTATAACAGAAATAGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAA
**
22923 TTTACACATAAATAAGTATTTAATTCAGTG
833 TTTACACATAAATAAGTATTTAATTCAAAG
* * * *
22953 ACCAAAAGTTTTTTTACGAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGA
1 ACCAAAAG-TTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGA
* *
23018 ATGTTCGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATA
65 ATGTTCGGAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATTA-A
* * *
23083 GAAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTT-TTCCTAAGAATCAAAAGAGAAATAATTCT
129 -AAGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGT-CTAAGAACCAAAAGAGAACTAATTCT
* * *
23147 CACATAAATATA-TTTTTAACTCAAAGACCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGAC
192 CACGTAAATA-AGTTTTTAATTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGAC
* * * *
23211 CGAATGATGCTATTTCCCGAGCATGGAATGTTTGGAATATTGATCGAAGGAATGAATTGTCTTGA
255 CGAATGATGCTATTTCCCGAGCATGGAATGTTCGGAAAATTG-TCGAAGGAATGGATCG-CTTGA
* * * * * * *
23276 ATACTTTAAGGAATCAAAGTTTTAAAAGAACTCGTAAAAAGCTTGACTAGTTCAGAAGTTCGTCT
318 ATACTTTAAGGAACCTAAGTTATGAAAGAACTCGT-AAAAGTTTGACAAGTTCAGAAGTTCGTCC
* * *** *
23341 AAGAACCAAA-TGAGAAACAATTCTCAC-ATAAATAAGTTTTTAGTTTGGAGACCAAAACTTGGT
382 AAGAA-CAAAGAGAGAAACAATTCTCACGA-AAATAAGTTTTTAATTCAAAGACCAAAAGTT-GT
* * * * * *
23404 TTTCAAAATGACAAACTATTTAGACCAAAAGACGCAATTTCTCGAGCATGGAATGTTTGGAAAAT
444 TTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATAT
* * * * * * *
23469 TGCTCGTAAA-AAAGGATCATCTTGAGTACTGTAAGGAACCGAAGTTATAACAGAAATAGTAAAA
509 TGCTCG-AAAGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAAA
* ** * * * * * *
23533 GTTTTCCTAGTTC-GAAAGTTCGTCCAAGAACCAAGAGATAAACAA-TAT-AC--ACATAAGTAT
572 GCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
** * * * * * * *
23593 TTAATTCAGTGACCAATAGTTTTTTTACGAAATGGA-AAACTATTTTGACCGAATGATTCGATTT
636 TTAATTCAAAGACCAAAAG-TTGTTTACAAAAT-GACAAACTATTTAGACCAAATGATGCAATTT
* * * * * *
23657 CCCGAGCATGGAATGTTCAGAATATTGCTCGAAGAATTGGATCATCTTGAATACTTTATGGAACC
699 CTCGAGCATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACC
* * * * * *
23722 GAAGTTATTATAGACGAAATAGTACAAGTTTGACAAGTTC-AGAAGTTTG-CCTAAGAATCAAAA
764 GAAGTTA-TA-ACA-GAAATAGTAAAAGTTTTACAAGTTCGA-AAGTTCGTCC-AAGAACCAAGA
* * *
23785 GAGAAATAATTCT-CACATAAATATA-TTTTTAACTCAAAG
824 GAGAAACAATT-TACACATAAATA-AGTATTTAATTCAAAG
* * *
23824 ACCAAAAAGTTGTTTGCAAAATGACAAACTATTTAGACCGAATGACGCTATTTCCCGAGCATGGA
1 ACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGA
* * * * *
23889 ATGTTGGGAATATTGATCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCAAAGTT-TTGAA
65 ATGTTCGGAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATTAAA
* * * * *
23953 AGAACTCGTAAAAAGCTTGACTAGTTTAGAATTTCGTCTAAGAACCAAAAGAGAAAC-AATTCTC
130 AGAAATAGT-AAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAAAGAG-AACTAATTCTC
* * ** * * * *
24017 ACGTGAATAAGTTTTTAGTTTGAGGACCAAAACTTGGTTTTCAAAATGACAAACTATTTAGACCA
193 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCG
* * * ** * * * ** *
24082 AAAGACGCAATTTCTAGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAACAGATGGTCTTGAAT
257 AATGATGCTATTTCCCGAGCATGGAATGTTCGGAAAATTG-TCGAAGGAATGGATCG-CTTGAAT
* * * * * * *
24147 ACTTTAAGGAACCCAAGTTATAAAATAACTCGTAAAGGTTTTACAAGTTCGGTAGTTCGTCCAAG
320 ACTTTAAGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAG
* * * *
24212 AACCAAGAGAGGAATAATTTTCAC-ATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
385 AACAAAGAGAGAAACAATTCTCACGA-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACA
* * * * * * * *
24276 AAATGACAAACTATTTAGACCAAAAGATTCCATTTCTGGAGAATGGAATG-TTCGAAAATTGCTC
449 AAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTC
* * * * * * * *
24340 G-ATGAAGTGGATCATTTATATATAATACACTTCAAGGAACCGAAGTTTTAAAAGAACTTGTCAA
514 GAAAGAA-TGGATC--GTCT-T-GAAT--ACTTTAAGGAACC-AAGTTATAAAAGAACTCGTAAA
* * * * * * * * *
24404 AGTTTGACAAGTCCGGAGGTTCGTCCAAGAACCAAGAGAGAAAGAAATCCCACGTCAATAAGTTT
571 AGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTT
* * * *
24469 TTAATTCAAAGACCAAAAGTTGTTCACAAAATGACAAACTATTTAGATCAAATGATGC-GTTTTT
636 TTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCT
* * * * * * * *
24533 CCGAACATTGAATGTTTGAAAAATTTG-TAGAAGGAATGGATCG-CATAGAATGCTTTAAGGAAC
701 -CGAGCATGGAATGTTCGGAAAA-TTGCTCGAAGAAATGGATCGTC-TTGAATACTTTAAGGAAC
* * * * * ** *
24596 CTAAGTTATGAA-TGAACTCA-TAAAAGTTTAACAAGTTCGGAAGTTTATCCAAGAACTAAGAGA
763 CGAAGTTAT-AACAGAAAT-AGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGA
* *
24659 GAAACAATTCT-CA-ACTAAAAAAGTTTTTAATTCAAAG
826 GAAACAATT-TACACA-TAAATAAGTATTTAATTCAAAG
* ** *
24696 ACCAAAAGTTGTTTACAAAATGACAAAATATTTAGATGGAATGATGCGATTTCTCGAGCATGGAA
1 ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAA
* * * *
24761 TGTTTGGAATATTGCTTGAAAGAATGGATC-TCCTTGAATACTTAAAGGAACCAAAGTTA-TAAA
66 TGTTCGGAATATTGCTCGAAGGAATGGATCAT-CTTGAATACTTTAAGGAACCAAAGTTATTAAA
* * * * *
24824 ATAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCG--T----------------CTAA-TCCCAC
130 AGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAAAGAGAACTAATTCTCAC
* ** *
24870 GTAAATAAGTTTTTAATTCAAAGATCAAAAGTTGTTTACAAAATGACAAAGGATTTAGACCGAGT
195 GTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAAT
* * * *
24935 GATGCAATTTCTCGAGCATGGAATGTTCGCAAAATTGTTCG-AGGAAATGGATCATCTTGAATAC
260 GATGCTATTTCCCGAGCATGGAATGTTCGGAAAATTG-TCGAAGG-AATGGATC-GCTTGAATAC
* * * ** * *
24999 TTTAAGGAACCAAAGTTAT-AACAGAAATAGTAAAAGTTTTCCTAGTT-TGAAAGTTCGTCCAAG
322 TTTAAGGAACCTAAGTTATGAA-AGAACTCGTAAAAGTTTGACAAGTTCAG-AAGTTCGTCCAAG
* * ** * *
25062 AACCAAGAGAGAAACAATT-TACAC-ATAAATAAGTATTTAATTCAGTGACCAAAAGTTTTTTAT
385 AACAAAGAGAGAAACAATTCT-CACGA-AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTAC
* * * * * *
25125 GAAATGGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGAATGGAATGTTAGGAATATTGCT
448 AAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCT
* * * * * *
25190 CGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAGAAGAAATAGAAAAAGC
513 CGAAAGAATGGATCGTCTTGAATACTTTAAGGAACC-AAGTTA-TA-A-AAGAACTCGTAAAAGC
* ** * * *
25255 TTGACAAGTTCAGAAGTT-TTCCTAAGAATTAAAAGAGAAATAATTCTCACATAAATATA-TTTT
574 TTGACAAGTTCAGAAGTTCGT-CTAAGAACCAAGAGAGAAACAATTCTCACGTAAATA-AGTTTT
* * * * *
25318 TAACTT-GAAGACCAAAAAGTTGTTTGCAAAATGAAAAACTATTTAGACCGAATGATGCTATTTC
637 TAA-TTCAAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTC
* * ** * * *
25382 CCGAGCATGGAATGTTCGGAATATTAATCGATGGAATGGATCGTCTTGAATACTTTAAGGAACCA
700 TCGAGCATGGAATGTTCGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCG
* * * * * * *
25447 AAGTTATTAA-AGAACTCGTAAAAAGCTTGACTAG-TCCAGAAGTTCGTCTAAGAACCAA-AGGA
765 AAGTTA-TAACAGAAATAGT-AAAAGTTTTACAAGTTCGA-AAGTTCGTCCAAGAACCAAGA-GA
* * * ** **
25509 GAAACAATTCT-CACGTACATAAGTTTTTGGTTTGAAG
826 GAAACAATT-TACACATAAATAAGTATTTAATTCAAAG
* * * * * * * *
25546 ACCAAAACTTGGTTTTCAAAATGACAAACCATTTAGACCAAAAGACGCAATTTCTCGAGCATGGA
1 ACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGA
* * * * * ** ** * * *
25611 ATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATGTTTTAATGAACCCAAGGTA-TAAA
65 ATGTTCGGAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATTAAA
* * * * * * * * * * *
25675 ATAACTAGTAAAAGTTTTACAAGTTCGGTAGCTCGTCCAAGAACCAAGAGAGAGAC-AATTTTTA
130 AGAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAAAGAGA-ACTAATTCTCA
* *
25739 CATAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAG
194 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAG
25798 TCCAAAAGAT
Statistics
Matches: 5236, Mismatches: 905, Indels: 382
0.80 0.14 0.06
Matches are distributed among these distances:
845 18 0.00
846 2 0.00
847 5 0.00
848 69 0.01
849 115 0.02
850 292 0.06
851 172 0.03
852 6 0.00
864 17 0.00
865 21 0.00
866 29 0.01
867 155 0.03
868 835 0.16
869 657 0.13
870 455 0.09
871 588 0.11
872 218 0.04
873 22 0.00
874 480 0.09
875 396 0.08
876 414 0.08
877 83 0.02
878 17 0.00
879 60 0.01
880 19 0.00
881 90 0.02
882 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (862 bp):
ACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGATGCGATTTCCCGAGCATGGAA
TGTTCGGAATATTGCTCGAAGGAATGGATCATCTTGAATACTTTAAGGAACCAAAGTTATTAAAA
GAAATAGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAAAGAGAACTAATTCTCACG
TAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATG
ATGCTATTTCCCGAGCATGGAATGTTCGGAAAATTGTCGAAGGAATGGATCGCTTGAATACTTTA
AGGAACCTAAGTTATGAAAGAACTCGTAAAAGTTTGACAAGTTCAGAAGTTCGTCCAAGAACAAA
GAGAGAAACAATTCTCACGAAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGAC
AAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTCGAAAGAA
TGGATCGTCTTGAATACTTTAAGGAACCAAGTTATAAAAGAACTCGTAAAAGCTTGACAAGTTCA
GAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCA
AAAGTTGTTTACAAAATGACAAACTATTTAGACCAAATGATGCAATTTCTCGAGCATGGAATGTT
CGGAAAATTGCTCGAAGAAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAACAGAAAT
AGTAAAAGTTTTACAAGTTCGAAAGTTCGTCCAAGAACCAAGAGAGAAACAATTTACACATAAAT
AAGTATTTAATTCAAAG
Found at i:25057 original size:197 final size:197
Alignment explanation
Indices: 24674--25034 Score: 521
Period size: 197 Copynumber: 1.8 Consensus size: 197
24664 AATTCTCAAC
* **
24674 TAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAATATTTAGATGGAATG
1 TAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAAGATTTAGACCGAATG
* * * *
24739 ATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGCTTGAAAGAATGGATCTCCTTGAATACTT
66 ATGCAATTTCTCGAGCATGGAATGTTCGCAAAATTGCTTGAAAGAATGGATCTCCTTGAATACTT
* * *
24804 AAAGGAACCAAAGTTATAAAATAACTCGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAATCCCA
131 AAAGGAACCAAAGTTATAAAAGAAATAGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAATCCCA
24869 CG
196 CG
* * * *
24871 TAAATAAGTTTTTAATTCAAAGATCAAAAGTTGTTTACAAAATGACAAAGGATTTAGACCGAGTG
1 TAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAAGATTTAGACCGAATG
*
24936 ATGCAATTTCTCGAGCATGGAATGTTCGCAAAATTG-TTCG-AGGAAATGGATCAT-CTTGAATA
66 ATGCAATTTCTCGAGCATGGAATGTTCGCAAAATTGCTT-GAAAG-AATGGATC-TCCTTGAATA
* *
24998 CTTTAAGGAACCAAAGTTATAACAGAAATAGTAAAAG
128 CTTAAAGGAACCAAAGTTATAAAAGAAATAGTAAAAG
25035 TTTTCCTAGT
Statistics
Matches: 144, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
196 4 0.03
197 139 0.97
198 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.29
Consensus pattern (197 bp):
TAAAAAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAAAGATTTAGACCGAATG
ATGCAATTTCTCGAGCATGGAATGTTCGCAAAATTGCTTGAAAGAATGGATCTCCTTGAATACTT
AAAGGAACCAAAGTTATAAAAGAAATAGTAAAAGCTTGAAAAGTTCAGAAGTTCGTCTAATCCCA
CG
Found at i:25405 original size:220 final size:217
Alignment explanation
Indices: 24871--25858 Score: 904
Period size: 218 Copynumber: 4.5 Consensus size: 217
24861 TAATCCCACG
* * ** *
24871 TAAATAAGTTTTTAATTCAAAGATCAAAAGTTGTTTACAAAATGACAAAGGATTTAGACCGAGTG
1 TAAATAAGTTTTTAATT-GAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATG
* * *
24936 ATGCAATTTCTCGAGCATGGAATGTTCGCAAAATTGTTCG-AGGAAATGGATCATCTTGAATACT
65 ATGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGG-AATGGATCATCTTGAATACT
* * * ** *
25000 TTAAGGAACCAAAGTTATA-ACAGAAATAGTAAAAGTTTTCCTAGTT-TGAAAGTTCGTCC-AAG
129 TTAAGGAACCAAAGTTATATAAAGAAATAGAAAAAGCTTGACTAGTTCAG-AAGTTCGTCCTAAG
*
25062 AACCAAGAGAGAAACAATT-TACACA
193 AACCAAAAGAGAAACAATTCT-CACA
* * * * ** * *
25087 TAAATAAGTATTTAATTCAGTGACCAAAAGTTTTTTATGAAATGGCAAACTATTTTGACCGAATG
1 TAAATAAGTTTTTAATTGA-AGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATG
* * * * *
25152 ATGCGATTTCCCGAGAATGGAATGTTAGGAATATTGCTCGAAGGATTGGATCATCTTGAATACTT
65 ATGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTT
* * *
25217 TAAGGAACCGAAGTTATTATAGAAGAAATAGAAAAAGCTTGACAAGTTCAGAAGTT-TTCCTAAG
130 TAAGGAACCAAAGTTA-TATA-AAGAAATAGAAAAAGCTTGACTAGTTCAGAAGTTCGTCCTAAG
** *
25281 AATTAAAAGAGAAATAATTCTCACA
193 AACCAAAAGAGAAACAATTCTCACA
* *
25306 TAAATATA-TTTTTAACTTGAAGACCAAAAAGTTGTTTGCAAAATGAAAAACTATTTAGACCGAA
1 TAAATA-AGTTTTTAA-TTGAAGACC-AAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAA
* * ** * *
25370 TGATGCTATTTCCCGAGCATGGAATGTTCGGAATATTAATCGATGGAATGGATCGTCTTGAATAC
63 TGATGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATAC
* * *
25435 TTTAAGGAACCAAAGTTAT-TAAAGAACTCGTAAAAAGCTTGACTAGTCCAGAAGTTCGT-CTAA
128 TTTAAGGAACCAAAGTTATATAAAGAAATAG-AAAAAGCTTGACTAGTTCAGAAGTTCGTCCTAA
* *
25498 GAACCAAAGGAGAAACAATTCTCACG
192 GAACCAAAAGAGAAACAATTCTCACA
* ** * * * * *
25524 TACATAAGTTTTTGGTTTGAAGACCAAAACTTGGTTTTCAAAATGACAAACCATTTAGACCAAAA
1 TAAATAAGTTTTT-AATTGAAGACCAAAAGTT-GTTTACAAAATGACAAACTATTTAGACCGAAT
* * * * * * ** **
25589 GACGCAATTTCTCGAGCATGGAATGTTTGGAAAATTGCTCGTAGAAACGGATGGTCTTGAATGTT
64 GATGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACT
* * * * * * * * * * * *
25654 TTAATGAACCCAAGGTATA-AAATAACTAGTAAAAGTTTTACAAGTTCGGTAGCTCGTCC-AAGA
129 TTAAGGAACCAAAGTTATATAAAGAAATAGAAAAAGCTTGACTAGTTCAGAAGTTCGTCCTAAGA
* * * *
25717 ACCAAGAGAGAGACAATTTTTACA
194 ACCAAAAGAGAAACAATTCTCACA
* * * * *
25741 TAAATAAGTTTTTAATTCAAAGACTAAAAGTTGTTTACAAAATGACAAACTATTTAGTCCAAAAG
1 TAAATAAGTTTTTAATT-GAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATG
*** * * * * *
25806 ATTTGATTTTCAGAGAATGGAATGTTC-GAAAATTTCTCG-ATGAAGTGGATCAT
65 ATGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAA-TGGATCAT
25859 TTATATATAA
Statistics
Matches: 624, Mismatches: 128, Indels: 41
0.79 0.16 0.05
Matches are distributed among these distances:
214 3 0.00
215 17 0.03
216 169 0.27
217 84 0.13
218 175 0.28
219 65 0.10
220 111 0.18
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.29
Consensus pattern (217 bp):
TAAATAAGTTTTTAATTGAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTAGACCGAATGA
TGCAATTTCCCGAGCATGGAATGTTCGGAAAATTGCTCGAAGGAATGGATCATCTTGAATACTTT
AAGGAACCAAAGTTATATAAAGAAATAGAAAAAGCTTGACTAGTTCAGAAGTTCGTCCTAAGAAC
CAAAAGAGAAACAATTCTCACA
Found at i:26853 original size:218 final size:216
Alignment explanation
Indices: 25933--29399 Score: 2846
Period size: 216 Copynumber: 15.7 Consensus size: 216
25923 GAGGTTTGTC
* *
25933 CAAAATGACAAAATATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGC
1 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTGC
* * * * * * *
25998 TTGAAAGATTGGATCGCCATGAATACTTTAAGGAACCAATGTTATAAAAGAACTCGTAGAAGCTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTT
* ** * *
26063 GA-AAGGTTCAGAAGTACGTCTAAGAACCAAGATTGAAACAATTCCCACGTAAATAAGTTTTTAA
131 GACAA-GTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
*
26127 TTCAAAGACCAAAAGTTGTTTA
195 TTCAAAGACCAAAAGTTGTTTT
* * *
26149 CAAAATGACAAACTATTTAGACC-AAGTGATGCAATTTCTCGAGTATGGAATGTT-GGCAAAATT
1 CAAAATGACAAACTATTTAGACCGAA-TGATGCGATTTCTCGAGCATGGAATGTTCGG-AATATT
* * * * * * *
26212 GCTCGAAGAAATGGATCATCTTTAATACTTTAAGGAACCGAAGTTATAACAGAAATAGTAAAAG-
64 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGC
** * * * * * *
26276 TTTTCCAGTT-TGAAAGTTCATCCAAGAACCAAGAGAGAAACAATT-TACACATACATAAGTATT
129 TTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTT
* ** *
26339 TAATTTAGTGACCAAAAGTTTTTTT
192 TAATTCAAAGACCAAAAGTTGTTTT
* * * *
26364 ACGAAAT-AGCAAACTATTTTGACCGAATGATGCGATTTCCCGAGCATGGAATGTTCGAAATATT
1 -CAAAATGA-CAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATT
* * * * *
26428 GCTCAAAGGATTGGATCATCTTGAATACTTTAAGGAA-CAGAAGTTATTATAGAAGAAATAGTAA
64 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCA-AAGTTA-TA-A-AAGAACTCGTAA
* * *
26492 AAGCTTGACAAGTTCAGAAGTTTGTCTAAGAATCGAA-AGAGAAATAATTCTCACATAAATATA-
125 AAGCTTGACAAGTTCAGAAGTTCGTCTAAGAA-CCAAGAGAGAAACAATTCTCACATAAATA-AG
* * *
26555 TTTTTAACTCAAAGACCGAAATGTTGTTTG
188 TTTTTAATTCAAAGACC-AAAAGTTGTTTT
* * * * * *
26585 CAAAATGACAAAGTATTTAGACCGAATGATACTATTTCCCGAACATGGAATGTTCGGAATATTGA
1 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTGC
* * *
26650 TTGAAGGAATGGATCGTCTTGAATACTTTAACGAACCAAAGTTATAAAGGAACTCGTAAAAAGCT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAAAGCT
* * * *
26715 TGACTAGTTCAAAAATTCGTCTAAGAACCAA-AGGAGAAACAATTATCACATAAATAAGTTTTTA
130 TGACAAGTTCAGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTA
* ** *
26779 GTTTGAAGACCAAAACTTGGTTTT
194 ATTCAAAGACCAAAAGTT-GTTTT
* * ** * * * *
26803 CAAAATGACAAACTATTTAGACCAAAAGACACAATTTCTCGAGAATGGAATGTTTGGAAAATTGC
1 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTGC
* * * * * * * * *
26868 TTGTAGAAACGGATGGTCTTGAATACTTTAAGGAACCCAAGTTATAAAATAACTCATAAAAGTTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTT
* * * * *
26933 TACAAGTTCGGTAGTTCGTCCAAGAACCAAGAGAG--ACAATTTTCACATAAATAAGTTTTTAAT
131 GACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
*
26996 TCAAAGACCAGAAGTTGTTTT
196 TCAAAGACCAAAAGTTGTTTT
* * * * *
27017 ACAAAATGACAAACTATTTAGACCAAAAGATTCGATTT-TCGGAGAATGGAATGTTC-GAAAATT
1 -CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAATATT
* * ** * * * *
27080 TCTCG-ATGAAGTGGATAAT-TTATAATACACTTCAAGGAA-CAGAAGTTTTAAAAGAACTTGTA
64 GCTCGAAGGAA-TGGATCGTCTT-GAAT--ACTTTAAGGAACCA-AAGTTATAAAAGAACTCGTA
* * * * * * *
27142 AAAGTTTGACAAGTCCGGAGGTTCATCTAAGAACCAAGAGAGAAGCAATT-TAGATCATTCAAGA
124 AAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CA-CA-T--A-A
* **** * * * *
27206 ACCAAG-AGAGAA-GCAAATCCCACGTCAGTAAGTTTTTAATT
183 A-TAAGTTTTTAATTCAAA---GAC--CA-AAAGTTGTT--TT
* * * * * * *
27247 CAAAGACTAAGAGTTGTTCACAAAATGACAAACTATTTAGATCAAATGATGAGATTTTTCGAACA
1 C----A--AA-A--TG---AC--AA--AC-TA-T-TTA-GACCGAATGATGCGATTTCTCGAGCA
* * * * * * *
27312 TTGAATGTTC-AACAAATTTG-TAGAAGGAATGGATCG-CATAGAATGA-TTTAAGGTACCTAAG
46 TGGAATGTTCGGA-ATA-TTGCTCGAAGGAATGGATCGTC-TTGAAT-ACTTTAAGGAACCAAAG
* * ** * * *
27373 TTATAAAAGAACTCATAAAAGTTTGACAAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAACAA
107 TTATAAAAGAACTCGTAAAAGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAA
* * *
27438 TTCTCGCGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTA
172 TTCTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTT
*
27483 CAAAATGACATAA-TATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTG
1 CAAAATGACA-AACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTG
* ** * * * *
27547 CTTGAACTAATGCACCGCCTTGAATACTTTAAGGAACCAATGTTATAAAAGAACTCGTAAAAGCT
65 CTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCT
* * * **
27612 TGAAAAGTTTAGAAGTTTGTCTAAGAACCAAGAGAGAAACAATTCTCATGTAAATAAGTTTTTAA
130 TGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAA
*
27677 TTCAAAGACCAAAAGTTGTTTA
195 TTCAAAGACCAAAAGTTGTTTT
* * * *
27699 CAAAATGACAAACGATTTAGACC-AAGTGATGCAATTTCTCGAGCATGGAATGTTCGCAAAATTG
1 CAAAATGACAAACTATTTAGACCGAA-TGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTG
* ** ** * *
27763 CTCGAAGAAATGGATCACCTTGAATA-TTTCAAGGAACTGAAGTTATAAACAGAAATAGTAAAAG
65 CTCGAAGGAATGGATCGTCTTGAATACTTT-AAGGAACCAAAGTTATAAA-AGAACTCGTAAAAG
* ** * * * * * *
27827 TTTTCCTAGTTCAAAACTTCATCCAAGAACCAAGAGAGAAACAATT-TACACATAAATAAGTATT
128 CTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTTTT
** *
27891 TAATTCAGTGACCAAAAGTTTTTTTT
192 TAATTCAAAGACCAAAAG-TTGTTTT
* * ** * * *
27917 ACGAAATGGCAAACTATTTTCACTGAATGATGTGATTTCTC-ACGCATGGAATGTTCGAAATATT
1 -CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGA-GCATGGAATGTTCGGAATATT
* * * * * *
27981 GCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAATCGAAGTTATTATAGAAGAAATAGTAAA
64 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTA-TA-A-AAGAACTCGTAAA
* * * *
28046 AGCTTGACAAGTTCAGAAGTTTGTCTAAGAATCAAAAGAGAAATAATTCTCACATAAATATA-TT
126 AGCTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATA-AGTT
*
28110 TTTAATTCAAAGACCAAAAAGTTGTTTG
190 TTTAATTCAAAGACC-AAAAGTTGTTTT
* * * * * *
28138 CAAAATGACAAACTATTTAGACCGAATGACGCTATTTCCCGGGCATGGAATGATCGGAATATTGA
1 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTGC
* * *
28203 TCAAAGGAATGGATCGACTTGAATACTTAAAGGAACCAAAGTTATAAAAGAACTCGTAAAAAGCT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGT-AAAAGCT
* * *
28268 TGACTAGTTCAGAAGTTCGTCCAAGAACCAA-AGGAGAAACAATTCTCACGTAAATAAGTTTTTA
130 TGACAAGTTCAGAAGTTCGTCTAAGAACCAAGA-GAGAAACAATTCTCACATAAATAAGTTTTTA
** * *
28332 ATTTGAAGAGCAAAACTTGGTTTT
194 ATTCAAAGACCAAAAGTT-GTTTT
* * * * * *
28356 CAAAATGACAAACTATTTAGAGCGAAAGATGCAATTTCTCGAGCATGGAGTGTTTGGAAAATTGC
1 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTGC
* ** * * *
28421 TCGTAA-AAACAGATGGTCTTGAATACTTTAAGGAACCGAAGTTAT-AAATAACTCATAAAAGTT
66 TCG-AAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTC------G--
* * * * *
28484 TTAAAAGAACTTGTAAAAGTTTGACAAGTCCGGAGGTTCATCTAAGAACCAAGAGAGAAGCAAAT
122 -TAAAAG--CTTG-ACAAG-TT--C-A-----GAAGTTCGTCTAAGAACCAAGAGAGAAACAATT
* * * * * * **
28549 CCCACGTCAGTAAGTTTTTAATTCAAAGACTAAGAGTTGTTCA
174 CTCACATAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTT
* * * * * * ** *
28592 CAAAATGACAAACTATTTAAATCAAATGATGCGATTTTTCGAACATTGAATGTTCAAAAAAATTG
1 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTC-GGAATATTG
* * * *
28657 -TAGAAGGAATGGATCG-CATAGAATGA-TTTAAGGAACCTAAGTTATAAAAGAACTCATAAAAG
65 CTCGAAGGAATGGATCGTC-TTGAAT-ACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAG
* * ** * * * *
28719 TTTGACGAGTTTGGAAGTTCATCCAAGAACTAAGAGAGAAACAATTCTCACGTAAATAAGTTTTT
128 CTTGACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTT
*
28784 AATTCAAAGACCAAAAGTTGTTTA
193 AATTCAAAGACCAAAAGTTGTTTT
* *
28808 CAAAATGACAAAATATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTTGGAATATTGC
1 CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTGC
* * * *
28873 TTGAAAGAATGGATCGCCTTGAATACTTTAAGGAACCAATGTTATAAAAGAACTCGTAAAAGCTT
66 TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTT
* * * * *
28938 GAAAAGTTCAGAAGTTTGTCTGAGAACCAAGAGAGAAACAATTCTCACGTAAATAAGTTTTGAAT
131 GACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
*
29003 TCAAAGACCAAAAGTTGTTTA
196 TCAAAGACCAAAAGTTGTTTT
* * * *
29024 CAAAATGACAAACGATTTAGACC-AATTGATGCTG-TTTCTCGAGCATGGAATGTTTGTAAAATT
1 CAAAATGACAAACTATTTAGACCGAA-TGATGC-GATTTCTCGAGCATGGAATGTTCGGAATATT
* * * * *
29087 GCTCGAA--ATATGGATCATCTTGAATACTTCAAGGAACCGAAGTTATAAACAGAAATAGTAAAA
64 GCTCGAAGGA-ATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAA-AGAACTCGTAAAA
* ** * * * * * *
29150 GTTTTCCTAGTTC-GAAAGTTTGTCCAAGAACCAAGAGAGAAACAATT-TACAGATAAATTAGTA
127 GCTTGACAAGTTCAG-AAGTTCGTCTAAGAACCAAGAGAGAAACAATTCT-CACATAAATAAGTT
** *
29213 TTTAATTCAGTGACCAAAAGTTTTTTT
190 TTTAATTCAAAGACCAAAAGTTGTTTT
* * *
29240 ACTAAATGACAAACTATTTTGACCGAATGATGCGATTTC-CTGAGCATGGAATGTTCGGAGTATT
1 -CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTC-GAGCATGGAATGTTCGGAATATT
* * * * *
29304 GCTCGAAGGATTGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTATAAAAGAAATAGTAAA
64 GCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAG---TTATAAAAGAACTCGTAAA
*
29369 AGCTTGACAAGTTCAGAAGTTTGTCTAAGAA
126 AGCTTGACAAGTTCAGAAGTTCGTCTAAGAA
29400 TCAAAATTAC
Statistics
Matches: 2615, Mismatches: 483, Indels: 302
0.77 0.14 0.09
Matches are distributed among these distances:
213 5 0.00
214 27 0.01
215 215 0.08
216 888 0.34
217 218 0.08
218 381 0.15
219 109 0.04
220 274 0.10
221 105 0.04
222 14 0.01
223 6 0.00
224 7 0.00
225 10 0.00
226 4 0.00
227 8 0.00
228 16 0.01
229 4 0.00
230 4 0.00
231 1 0.00
232 2 0.00
233 1 0.00
235 5 0.00
236 82 0.03
237 71 0.03
238 10 0.00
239 2 0.00
241 4 0.00
242 3 0.00
243 6 0.00
244 5 0.00
245 2 0.00
246 2 0.00
247 2 0.00
248 70 0.03
249 30 0.01
250 15 0.01
251 7 0.00
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (216 bp):
CAAAATGACAAACTATTTAGACCGAATGATGCGATTTCTCGAGCATGGAATGTTCGGAATATTGC
TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCAAAGTTATAAAAGAACTCGTAAAAGCTT
GACAAGTTCAGAAGTTCGTCTAAGAACCAAGAGAGAAACAATTCTCACATAAATAAGTTTTTAAT
TCAAAGACCAAAAGTTGTTTT
Found at i:33079 original size:16 final size:16
Alignment explanation
Indices: 33058--33089 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
33048 TTTGTTGTTG
33058 GATCATCAATCAAATT
1 GATCATCAATCAAATT
33074 GATCATCAATCAAATT
1 GATCATCAATCAAATT
33090 AAGGAATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (16 bp):
GATCATCAATCAAATT
Found at i:34774 original size:46 final size:46
Alignment explanation
Indices: 34724--34885 Score: 144
Period size: 46 Copynumber: 3.5 Consensus size: 46
34714 TAGCTCTTGT
* *
34724 ATATGTTACGGACTGGAGAATACAAATTTAGGTTCCCAGCTCCTAT
1 ATATGTTACAGACTGGAGAATACAAATTTAGGTTCCCAGCTCCTAC
* * *** * * *
34770 ATATGTTACAGATTGGAAAATATGGATGTAGGTTCCCAACTCCTGC
1 ATATGTTACAGACTGGAGAATACAAATTTAGGTTCCCAGCTCCTAC
* ** * * * * *
34816 ATACGTTGTAGACTGAATAATACGAATTTAGGTTCCTAGTTCCTAC
1 ATATGTTACAGACTGGAGAATACAAATTTAGGTTCCCAGCTCCTAC
* *
34862 ATATGTTACGGATTGGAGAATACA
1 ATATGTTACAGACTGGAGAATACA
34886 TAATATTAAG
Statistics
Matches: 85, Mismatches: 31, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.31
Consensus pattern (46 bp):
ATATGTTACAGACTGGAGAATACAAATTTAGGTTCCCAGCTCCTAC
Found at i:37182 original size:16 final size:16
Alignment explanation
Indices: 37163--37216 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
37153 GAATTATTTG
*
37163 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
*
37179 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
* * *
37195 ATTGCAGCCCTATTGC
1 ATTACAGCTCTATTCC
37211 ATTACA
1 ATTACA
37217 ACCTTATTCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.37
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:37224 original size:16 final size:16
Alignment explanation
Indices: 37172--37225 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
37162 GATTACAGCT
37172 TTATTCCATTACAA-C
1 TTATTCCATTACAACC
* *
37187 TCTATTCCATTGCAGCC
1 T-TATTCCATTACAACC
* *
37204 CTATTGCATTACAACC
1 TTATTCCATTACAACC
37220 TTATTC
1 TTATTC
37226 AATTCTAGAC
Statistics
Matches: 29, Mismatches: 8, Indels: 3
0.73 0.20 0.08
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.26, C:0.30, G:0.06, T:0.39
Consensus pattern (16 bp):
TTATTCCATTACAACC
Found at i:43379 original size:24 final size:24
Alignment explanation
Indices: 43345--43845 Score: 511
Period size: 24 Copynumber: 20.9 Consensus size: 24
43335 TTTATCTGAA
* *
43345 TAGCTGGCGAGCGTAAACGCATAT
1 TAGCTGACGAGCGTAAACGTATAT
43369 TAGCTGACGAGCGTAAACGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
* **
43393 TAGTTGGTGAGCGTAAACGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
*
43417 TAGCT-AGCGAGCGTAAATGTATAT
1 TAGCTGA-CGAGCGTAAACGTATAT
* * *
43441 TAGCTGGCGAGCATAAACGCATAT
1 TAGCTGACGAGCGTAAACGTATAT
* * * *
43465 TAGCTGGCGAGCATAAACGTACAC
1 TAGCTGACGAGCGTAAACGTATAT
* *
43489 TAGCTGACAAGCGTAAATGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
* *
43513 TAGTTGACGAGCGTAAACATATAT
1 TAGCTGACGAGCGTAAACGTATAT
43537 TAGCTGACGAGCGTAAACGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
* *
43561 TAGTTGGCGAGCGTAAACGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
* *
43585 TAGCT-AGCGAACATAAACGTATAT
1 TAGCTGA-CGAGCGTAAACGTATAT
* *
43609 TAGCTGGCGAGCGTAAAAGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
* * * * *
43633 TAGCTAACAAGCGTAAACATACAC
1 TAGCTGACGAGCGTAAACGTATAT
* *
43657 TAGCTGACGAGAGTAAATGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
43681 TAGCTGACGAGCGTAAACGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
* * * * *
43705 TAGTTGGCGAGTGTAAATGCATAT
1 TAGCTGACGAGCGTAAACGTATAT
* ** * * ** *
43729 TAGTTGATTAGTGTAAACATCCAC
1 TAGCTGACGAGCGTAAACGTATAT
*
43753 TAGCAGACGAGCGTAAACGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
* * **
43777 TAGCTGGCGAGTGTAAACACATAT
1 TAGCTGACGAGCGTAAACGTATAT
* *
43801 TAACTGATGAGCGTAAACGTATAT
1 TAGCTGACGAGCGTAAACGTATAT
*
43825 CAGCTGACGAGCGTAAACGTA
1 TAGCTGACGAGCGTAAACGTA
43846 CTAAACTTGT
Statistics
Matches: 382, Mismatches: 91, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
24 382 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.26
Consensus pattern (24 bp):
TAGCTGACGAGCGTAAACGTATAT
Found at i:46204 original size:106 final size:107
Alignment explanation
Indices: 45922--46232 Score: 444
Period size: 106 Copynumber: 2.9 Consensus size: 107
45912 ATTAATAGTA
* ** * *
45922 AGCCTAGCTCTAGTTGGATTAACCAACTATTTTGCGTCCAGTGCTAGTCAGATAAATCGACGAAT
1 AGCCCAGCTCTAGTTGGATTAACCAACGGTATTGCGCCCAGTGCTAGTCAGATAAATCGACGAAT
* * *
45987 GTGTGCCTAGCACTAGTTAGATAAACTGACAAATAGTTAATG
66 GTGTGCCCAGCACTAGTCAGATAAACTGACAAATAGATAATG
* * * * *
46029 AGCCCAGCTCTAGTTGGATTAACCAATGGTATTACGCACAGTGCTAGTCAGATAAACCGATGAAT
1 AGCCCAGCTCTAGTTGGATTAACCAACGGTATTGCGCCCAGTGCTAGTCAGATAAATCGACGAAT
*
46094 GTGTGCCCAGCACTAGTCAGATAAACTAACAAATA-ATAATG
66 GTGTGCCCAGCACTAGTCAGATAAACTGACAAATAGATAATG
* * *
46135 AGCCCAGCTCTAGTTGGATTAACCAACGGTATTGCGCCCAGCGCTAGTCGGATAAATCGACGAAA
1 AGCCCAGCTCTAGTTGGATTAACCAACGGTATTGCGCCCAGTGCTAGTCAGATAAATCGACGAAT
* *
46200 GTGTGCCCAACACTAGTCAGATTAACTGACAAA
66 GTGTGCCCAGCACTAGTCAGATAAACTGACAAA
46233 AGTTATGCCC
Statistics
Matches: 179, Mismatches: 25, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
106 92 0.51
107 87 0.49
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (107 bp):
AGCCCAGCTCTAGTTGGATTAACCAACGGTATTGCGCCCAGTGCTAGTCAGATAAATCGACGAAT
GTGTGCCCAGCACTAGTCAGATAAACTGACAAATAGATAATG
Found at i:46208 original size:34 final size:35
Alignment explanation
Indices: 46170--46258 Score: 92
Period size: 34 Copynumber: 2.6 Consensus size: 35
46160 ACGGTATTGC
* * *
46170 GCCCAGCGCTAGTCGGATAAA-TCGACGAAAG-TGT
1 GCCCAGCGCTAGTCAGATAAACT-GACAAAAGTTAT
* * *
46204 GCCCAACACTAGTCAGATTAACTGACAAAAGTTAT
1 GCCCAGCGCTAGTCAGATAAACTGACAAAAGTTAT
*
46239 GCCCAGCGCTAGCCAGATAA
1 GCCCAGCGCTAGTCAGATAA
46259 TTGACGAGTC
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
34 24 0.56
35 19 0.44
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.18
Consensus pattern (35 bp):
GCCCAGCGCTAGTCAGATAAACTGACAAAAGTTAT
Found at i:51419 original size:10 final size:10
Alignment explanation
Indices: 51404--51437 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
51394 AGGAGGTCAA
51404 AAAAAAAAAG
1 AAAAAAAAAG
51414 -AAAAAAAAG
1 AAAAAAAAAG
*
51423 AAAAGAAAAG
1 AAAAAAAAAG
51433 AAAAA
1 AAAAA
51438 GGAAAGAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:51419 original size:14 final size:14
Alignment explanation
Indices: 51402--51437 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
51392 AAAGGAGGTC
51402 AAAAAAAAAAAGAA
1 AAAAAAAAAAAGAA
*
51416 AAAAAAGAAAAGAA
1 AAAAAAAAAAAGAA
51430 AAGAAAAA
1 AA-AAAAA
51438 GGAAAGAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:51447 original size:14 final size:14
Alignment explanation
Indices: 51403--51450 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
51393 AAGGAGGTCA
* *
51403 AAAAAAAAAAGAAA
1 AAAAAGAAAAGAAG
51417 AAAAAGAAAAGAAAAG
1 AAAAAGAAAAG--AAG
*
51433 AAAAAGGAAAGAAG
1 AAAAAGAAAAGAAG
51447 AAAA
1 AAAA
51451 TAAAGTAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 17 0.59
16 12 0.41
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAGAAG
Found at i:51460 original size:17 final size:16
Alignment explanation
Indices: 51402--51467 Score: 59
Period size: 17 Copynumber: 4.2 Consensus size: 16
51392 AAAGGAGGTC
51402 AAAAAAA-AAAAG-A-
1 AAAAAAAGAAAAGAAG
51415 AAAAAAAGAAAAGAA-
1 AAAAAAAGAAAAGAAG
*
51430 AAGAAAAAGGAAAGAAG
1 AA-AAAAAGAAAAGAAG
* *
51447 AAAATAAAGTAAAGATG
1 AAAA-AAAGAAAAGAAG
51464 AAAA
1 AAAA
51468 CCCGCAAAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
13 7 0.16
14 5 0.11
15 3 0.07
16 14 0.31
17 16 0.36
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (16 bp):
AAAAAAAGAAAAGAAG
Found at i:53351 original size:96 final size:96
Alignment explanation
Indices: 53167--53358 Score: 255
Period size: 96 Copynumber: 2.0 Consensus size: 96
53157 TTTTTGGAAA
* ** *
53167 AAGGTTATTCGATTATCTCGATTTGAAGAAAGGTTGCACCTAGTAAGTTAAGGCACAATATTTTA
1 AAGGGTATTCGATTATCTCGATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCACAATATTTTA
*
53232 GAATCGAAGATAAGGAAACATTGCCTCGATT
66 GAATCGAAGATAAAGAAACATTGCCTCGATT
* * *
53263 AAGGGTATTCGATTATTTCGATTTGAGGAAAAATTACACCTAGTAAGTTAAGGCACAA-ATTTTT
1 AAGGGTATTCGATTATCTCGATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCACAATATTTTA
*
53327 GAAACTCGAA-ATAAA-AGAATATTGCCTCGATT
66 G-AA-TCGAAGATAAAGA-AACATTGCCTCGATT
53359 TTAAAGTTTT
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
95 7 0.08
96 72 0.86
97 5 0.06
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (96 bp):
AAGGGTATTCGATTATCTCGATTTGAAGAAAAATTACACCTAGTAAGTTAAGGCACAATATTTTA
GAATCGAAGATAAAGAAACATTGCCTCGATT
Found at i:53713 original size:58 final size:59
Alignment explanation
Indices: 53617--53781 Score: 142
Period size: 58 Copynumber: 2.8 Consensus size: 59
53607 GGACTTATTG
* * * * *
53617 GGGTAAAATGGG-AATTTTGGGAAAGTTCGA--GTTAAAAATGGAATTTTTAGACATTCGG
1 GGGTAAAA-GGGTAATTTTGAG-AGGTTCGAGGGTCAAAAATGGAATTTTTAGACATCCGA
* * * * *
53675 GGGTAAAAGGGTAATTTTGAGA-GTGTCGA-GGTCGAAAATGGAGTTTCTGGACATCCTA
1 GGGTAAAAGGGTAATTTTGAGAGGT-TCGAGGGTCAAAAATGGAATTTTTAGACATCCGA
* * **
53733 GGGTAAAATGGTAATTTTTAGAGGTTTTAGGGTCAAAAATGGAATTTTT
1 GGGTAAAAGGGTAATTTTGAGAGGTTCGAGGGTCAAAAATGGAATTTTT
53782 GGAAGTTCGA
Statistics
Matches: 86, Mismatches: 16, Indels: 9
0.77 0.14 0.08
Matches are distributed among these distances:
56 2 0.02
57 8 0.09
58 58 0.67
59 18 0.21
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (59 bp):
GGGTAAAAGGGTAATTTTGAGAGGTTCGAGGGTCAAAAATGGAATTTTTAGACATCCGA
Found at i:54106 original size:29 final size:29
Alignment explanation
Indices: 53733--54146 Score: 397
Period size: 30 Copynumber: 13.9 Consensus size: 29
53723 GGACATCCTA
* * *
53733 GGGT-AAAATGGTAATTTTTAGAGGTTTTA
1 GGGTAAAAATGG-AATTTTTGGAAGTTTTG
*
53762 GGGTCAAAAATGGAATTTTTGGAAG-TTCG
1 GGGT-AAAAATGGAATTTTTGGAAGTTTTG
*
53791 AGGCTAAAAATGGAATTTTTGGAAGTTTTG
1 -GGGTAAAAATGGAATTTTTGGAAGTTTTG
* * *
53821 AGGTCAAAAATGGGATTTTTGGAAG-TTCG
1 GGGT-AAAAATGGAATTTTTGGAAGTTTTG
* *
53850 AGGCTAAAAATGGGATTTTTGGAAGTTTTG
1 -GGGTAAAAATGGAATTTTTGGAAGTTTTG
* *
53880 GGGTCAAAAATGGGATTTTTGGAAGTTTAG
1 GGGT-AAAAATGGAATTTTTGGAAGTTTTG
53910 GGGTAAAAATGGAATTTTTGGAAGTTTTG
1 GGGTAAAAATGGAATTTTTGGAAGTTTTG
* **
53939 GGGTAAAAAATGGGATTTTTGGAAGTTCAG
1 GGGT-AAAAATGGAATTTTTGGAAGTTTTG
* * * *
53969 GGGTAAAATTAGAATTTTTTTGAAGTTTTA
1 GGGTAAAAATGGAA-TTTTTGGAAGTTTTG
* ***
53999 GGGTCAAAAATAGGGATTTTTGGAAGTTCAA
1 GGGT-AAAAAT-GGAATTTTTGGAAGTTTTG
54030 GGGTAAAAATGGAATTTTTGGAAGTTTTG
1 GGGTAAAAATGGAATTTTTGGAAGTTTTG
* *
54059 AGGTCAAAAAT-GAGATTTTTGGAAGTTTGG
1 GGGT-AAAAATGGA-ATTTTTGGAAGTTTTG
**
54089 GGGTAAAAAT-GAATTTTTTTGGAAGTTCAG
1 GGGTAAAAATGGAA--TTTTTGGAAGTTTTG
* *
54119 GGGTGAAAATAGAATTTTTGGACAGTTT
1 GGGTAAAAATGGAATTTTTGGA-AGTTT
54147 AGGGACCTCT
Statistics
Matches: 323, Mismatches: 44, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
28 1 0.00
29 124 0.38
30 165 0.51
31 31 0.10
32 2 0.01
ACGTcount: A:0.32, C:0.03, G:0.29, T:0.36
Consensus pattern (29 bp):
GGGTAAAAATGGAATTTTTGGAAGTTTTG
Found at i:54140 original size:59 final size:59
Alignment explanation
Indices: 53732--54115 Score: 502
Period size: 59 Copynumber: 6.5 Consensus size: 59
53722 TGGACATCCT
* * * * *
53732 AGGGT-AAAATGGTAATTTTTAGAGGTTTTAGGGTCAAAAATGGAATTTTTGGAAGTTCG
1 AGGGTAAAAATGG-AATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCA
* * *
53791 AGGCTAAAAATGGAATTTTTGGAAGTTTTGAGGTCAAAAATGGGATTTTTGGAAGTTCG
1 AGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCA
* * *
53850 AGGCTAAAAATGGGATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTTA
1 AGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCA
* *
53909 GGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTAAAAAATGGGATTTTTGGAAGTTCA
1 AGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCA
* * * * *
53968 GGGGTAAAATTAGAATTTTTTTGAAGTTTTAGGGTCAAAAATAGGGATTTTTGGAAGTTCA
1 AGGGTAAAAATGGAA-TTTTTGGAAGTTTTGGGGTCAAAAAT-GGGATTTTTGGAAGTTCA
* * **
54029 AGGGTAAAAATGGAATTTTTGGAAGTTTTGAGGTCAAAAATGAGATTTTTGGAAGTTTG
1 AGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCA
*
54088 GGGGTAAAAAT-GAATTTTTTTGGAAGTT
1 AGGGTAAAAATGGAA--TTTTTGGAAGTT
54116 CAGGGGTGAA
Statistics
Matches: 290, Mismatches: 30, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
58 3 0.01
59 192 0.66
60 65 0.22
61 30 0.10
ACGTcount: A:0.32, C:0.03, G:0.29, T:0.36
Consensus pattern (59 bp):
AGGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTCAAAAATGGGATTTTTGGAAGTTCA
Found at i:54934 original size:26 final size:25
Alignment explanation
Indices: 54896--54948 Score: 88
Period size: 26 Copynumber: 2.1 Consensus size: 25
54886 TCCATTTTCC
*
54896 CCTTTTTTTTTAAAACTTCTCTTTT
1 CCTTTTTGTTTAAAACTTCTCTTTT
54921 CCTTTTTCGTTTAAAACTTCTCTTTT
1 CCTTTTT-GTTTAAAACTTCTCTTTT
54947 CC
1 CC
54949 CCCTTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.15, C:0.25, G:0.02, T:0.58
Consensus pattern (25 bp):
CCTTTTTGTTTAAAACTTCTCTTTT
Found at i:55962 original size:17 final size:17
Alignment explanation
Indices: 55942--56023 Score: 60
Period size: 17 Copynumber: 4.9 Consensus size: 17
55932 AAATAAATTT
55942 TAAATTTAAATTTATAA
1 TAAATTTAAATTTATAA
**
55959 TAAA-TTAAATTTCA-GC
1 TAAATTTAAATTT-ATAA
*
55975 TAAATTTAAATTTAGAA
1 TAAATTTAAATTTATAA
** * *
55992 TAAACATAATTTTAAAA
1 TAAATTTAAATTTATAA
* *
56009 TAATTTTAAGTTTAT
1 TAAATTTAAATTTAT
56024 TGGGCCCAGA
Statistics
Matches: 49, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
16 13 0.27
17 36 0.73
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.44
Consensus pattern (17 bp):
TAAATTTAAATTTATAA
Found at i:56500 original size:50 final size:50
Alignment explanation
Indices: 56409--56513 Score: 138
Period size: 50 Copynumber: 2.1 Consensus size: 50
56399 GTGGGTCGGA
*
56409 TTAAAGCTAAAAAGGGGCAAATTAAAGACACAAAGAAGAATCATATACCC
1 TTAAAACTAAAAAGGGGCAAATTAAAGACACAAAGAAGAATCATATACCC
* * * * * * *
56459 TTAAAACTAAAAAGGGGCAGATTGAAGCCGCGAAGATGAATCTTATACCC
1 TTAAAACTAAAAAGGGGCAAATTAAAGACACAAAGAAGAATCATATACCC
56509 TTAAA
1 TTAAA
56514 GATATAGAGG
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (50 bp):
TTAAAACTAAAAAGGGGCAAATTAAAGACACAAAGAAGAATCATATACCC
Found at i:57486 original size:50 final size:50
Alignment explanation
Indices: 56496--57484 Score: 719
Period size: 50 Copynumber: 19.8 Consensus size: 50
56486 CCGCGAAGAT
* * * * * *
56496 GAATCTTATACCCTTAAAGATATAGAGGGAAATATTAAAGCTGCAAAAGC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
* * * * * * * *
56546 GAAACTTATACCCTTGAAGAGGAAAAGGGACAGATTGAAGTCGTAGAGGC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
* * * * *
56596 AAATCTTATACCCTTAAAGATGTAGAGGGAAAGATTGAGGCTGCAAAAGC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
* * * * * *
56646 GAATCTTATACCCTTGAAGA-GAAAAATGGG-TAGATTGAAGTCGCAGAGGC
1 GAATCTTATACCCTTAAAGATG-TAGA-GGGACAGATTGAAGTTGCAGAAGC
* * * * * *
56696 GAATCTTATACCCTTAAAGATGTAGAGGGAAACAATGAAGTTACAAAAGT
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
* ** * * * *
56746 GAATCTTATAACCTTAAAGA-GGGGAAGGGACAGATTAAAGTCGTAGAGGC
1 GAATCTTATACCCTTAAAGATGTAG-AGGGACAGATTGAAGTTGCAGAAGC
* * * * * *
56796 GAATCTTATACCCTTAAAGATGTAGAGAGAAAGATTGTAGCTGCAAAAGT
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
* * * * * *
56846 GAATCTTATACCCTTAAAGAGGAAGAGGGGCAAATTGAAGCTGTAG-AGAC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAG-C
* * * * * * *
56896 GAACCTTATACCCTTAAAAATATAGAAGGACAGATTGAAGCTACA-AAGGT
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAA-GC
* * * * * *
56946 GAATCTTATACCCCTAAAGATGTAGAGGGAAAGATTGAAATTGTAAAAGT
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
* * * * * *
56996 AAATATTATACCCTTAAAGA-GAAAGAGGGGCAGATTGAAGTCGTA-AAGGC
1 GAATCTTATACCCTTAAAGATG-TAGAGGGACAGATTGAAGTTGCAGAA-GC
* * *
57046 GAATCTTATACCCTTAAAGATGT-GAGGGAAAGATTGAAGCTGCA-AAGGT
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAA-GC
* * * * *
57095 GAATCTTATACCCTTAAAGAGGAAGAGAGG-CAGATTGAAGTCGTAGAGGC
1 GAATCTTATACCCTTAAAGATGTAGAG-GGACAGATTGAAGTTGCAGAAGC
* * * *
57145 AAATCTTATACCCTTAAAGATGCAGAGGGAAAGACTGAAGTTGCA-AATGC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAA-GC
* * *** * *
57195 GAATCTTATACCCTTGAAGA-GAAAGAGGGGTGGATTGAAGTTGCAGAGGT
1 GAATCTTATACCCTTAAAGATG-TAGAGGGACAGATTGAAGTTGCAGAAGC
* *
57245 GAATCTTATACCCTTAAAGATATAGAGGGAAAGATTGAAGTTGCA-AAGGC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAA-GC
* * * * * * * *
57295 GAATCTTATACCCTTGAAGAGGAAAAGGGGCGGATTGAAATGGCAG-AGAC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAG-C
* * * * *
57345 GAATCTTATACCTTTAAAGATGTAGAGGGAAAGATTGAAGCTACAAAAGC
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
* ** * * * ** ** * *
57395 GAATATTATACCCTGGAAGAGGAAGTGGGGTAGATTGAAGCCGTAGAAGT
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
*
57445 GAATCTTATACCCTTAAAGATGTAGAGGGACAGGTTGAAG
1 GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAG
57485 CCACAAGGTA
Statistics
Matches: 712, Mismatches: 202, Indels: 50
0.74 0.21 0.05
Matches are distributed among these distances:
49 58 0.08
50 638 0.90
51 16 0.02
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (50 bp):
GAATCTTATACCCTTAAAGATGTAGAGGGACAGATTGAAGTTGCAGAAGC
Found at i:59379 original size:4 final size:4
Alignment explanation
Indices: 59340--59368 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
59330 CACTTTATAT
59340 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
59369 CCCTTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Done.