genome.fa.s14742.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014742.1 Kokia drynarioides strain JFW-HI SEQ_129781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219017

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1233--1298	20	3.2	20	75	18	64	59	1	0	39	1.07
1245--1299	20	2.7	21	78	15	71	60	1	0	38	1.08
2421--2462	20	2.1	20	86	8	59	50	0	11	38	1.40
3737--4139	30	13.7	29	74	17	323	32	3	32	31	1.76
3708--4142	59	7.4	59	87	3	583	31	4	31	31	1.77
5329--5375	24	2.0	24	82	0	58	40	4	6	48	1.48
5907--5977	15	4.7	15	87	0	106	16	11	26	45	1.82
5971--6011	13	3.2	13	80	16	50	21	4	17	56	1.60
6009--6064	17	3.4	16	80	7	67	53	1	1	42	1.21
6252--6310	25	2.3	26	82	5	66	27	1	1	69	1.07
6255--6312	26	2.2	27	81	6	66	25	1	1	70	1.06
7591--7697	41	2.6	41	95	0	187	32	25	16	25	1.96
8118--8160	21	2.0	21	100	0	86	23	16	18	41	1.89
10081--10146	22	3.1	21	76	4	62	68	1	3	27	1.13
30576--30649	21	3.5	21	81	7	80	31	14	22	31	1.94
39216--39296	24	3.4	24	94	0	135	51	7	12	28	1.66
39511--39713	109	1.9	108	82	7	259	33	10	14	41	1.79
41573--41835	39	6.7	39	83	1	276	39	19	16	24	1.91
41684--41745	22	3.0	22	60	22	53	37	16	17	29	1.92
42021--42070	26	2.0	26	92	4	84	54	18	6	22	1.65
43251--43487	52	4.6	52	89	1	370	37	25	12	24	1.91
44434--44466	16	2.1	16	94	0	57	24	18	3	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44995--45053	28	2.1	28	100	0	118	47	13	0	38	1.43
48926--48989	20	3.2	20	69	20	62	43	23	7	25	1.80
48939--49002	20	3.2	20	67	20	53	39	21	12	26	1.89
48905--49124	74	2.9	76	81	6	239	38	20	15	26	1.92
48910--49124	113	1.9	113	86	0	304	38	20	15	26	1.92
48905--49162	39	6.7	38	81	8	247	39	20	15	25	1.91
64968--65032	29	2.2	29	94	0	112	58	7	6	27	1.50
65617--65665	22	2.2	22	85	0	62	34	10	6	48	1.62
65625--65666	22	1.9	22	90	0	66	35	7	7	50	1.57
69503--69710	69	3.0	69	87	0	299	20	20	23	36	1.96
72841--72894	26	2.1	25	82	3	63	25	24	11	38	1.88
74445--74482	14	2.6	15	84	16	53	42	5	7	44	1.56
78141--78264	23	5.5	22	78	11	126	12	20	22	43	1.86
78190--78255	22	2.9	22	81	6	69	15	21	25	37	1.92
83745--83794	23	2.2	23	89	3	75	18	18	24	40	1.91
91463--91564	17	5.9	17	83	1	123	37	1	2	57	1.25
91463--91558	34	2.8	34	88	1	138	35	2	3	59	1.25
91465--91564	6	17.3	6	73	8	55	37	2	3	58	1.25
91469--91558	11	7.9	12	70	18	59	35	2	3	58	1.27
91538--91709	85	2.0	85	98	0	335	43	15	9	31	1.78
93428--93732	29	10.5	30	76	12	223	35	25	3	35	1.73
93438--93698	59	4.5	56	78	8	249	36	23	3	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95101--95247	66	2.2	66	92	0	240	18	19	23	38	1.93
102199--102326	61	2.1	61	94	0	220	25	19	16	38	1.92
106067--107155	208	5.2	209	84	2	1348	37	17	21	23	1.94
106959--107401	124	3.6	124	82	5	536	36	17	23	23	1.95
107832--107933	17	5.9	17	82	1	123	37	1	3	56	1.29
107834--107933	6	17.3	6	72	8	55	37	2	4	57	1.29
107832--107924	34	2.7	34	91	1	150	35	2	4	58	1.30
109747--109843	29	3.3	29	91	1	149	38	25	0	36	1.57
109736--109870	29	4.5	30	84	9	143	40	23	0	34	1.60
109736--109889	59	2.6	58	81	7	159	40	25	1	32	1.64
109736--109889	29	5.2	29	85	4	139	40	25	1	32	1.64
116943--116981	17	2.3	17	81	0	51	17	10	25	46	1.80
119550--119580	10	2.9	11	90	9	55	29	6	0	64	1.18
121687--121727	15	2.6	16	84	3	57	34	0	2	63	1.08
121755--121794	20	2.0	20	90	0	62	32	2	7	57	1.40
127036--127088	21	2.6	20	75	13	54	39	0	0	60	0.97
142363--142394	3	10.7	3	100	0	64	34	31	0	34	1.58
148286--148357	31	2.4	30	86	4	99	34	11	13	40	1.81
148500--148555	28	2.0	29	89	3	87	48	14	8	28	1.74
155678--155721	24	2.0	21	86	13	61	54	0	2	43	1.12
155653--155769	62	1.9	61	86	5	166	53	2	2	41	1.28
157365--157653	51	5.7	51	87	0	391	30	23	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157365--157653	153	1.9	152	88	2	436	30	23	13	31	1.94
173134--173279	69	2.1	69	83	0	184	23	36	6	32	1.82
176254--176299	22	2.1	22	83	0	56	36	2	26	34	1.69
179822--179898	38	2.0	38	100	0	154	29	23	18	28	1.97
184096--184708	306	2.0	304	96	1	1122	37	20	15	27	1.92
187786--187825	21	1.9	21	85	10	55	67	7	5	20	1.34
194500--194539	19	2.0	20	85	4	55	50	10	2	37	1.50
200010--200116	29	3.6	28	72	14	90	27	14	9	48	1.75
200004--200135	60	2.2	59	84	7	169	25	12	9	52	1.70
200373--200467	35	2.9	34	86	7	124	51	10	14	23	1.73
200342--200513	93	1.8	93	83	1	227	45	11	17	25	1.82
200373--200513	31	4.5	31	71	19	105	48	9	17	24	1.77
200760--200821	18	3.4	19	78	12	58	62	6	0	30	1.20
201544--201639	49	2.0	48	87	2	138	37	13	8	40	1.75
211253--211449	60	3.3	59	77	14	179	25	10	12	51	1.71
211899--211964	26	2.8	23	72	9	62	37	0	7	54	1.29
212444--212483	21	2.0	20	90	5	62	20	0	7	72	1.08
213185--213231	7	6.6	7	80	20	53	68	4	0	27	1.08
213183--213229	22	2.2	20	92	7	76	68	4	0	27	1.08
213220--213283	21	3.0	22	82	11	71	56	0	3	40	1.15
213234--213283	22	2.2	22	86	10	66	54	0	4	42	1.19
214123--214168	20	2.4	19	82	7	56	34	2	2	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217491--217609	45	2.6	45	87	0	166	21	22	24	31	1.98
218177--218260	43	2.0	42	88	2	123	47	10	11	29	1.74

Tables:   1

The End!