genome.fa.s14743.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014743.1 Kokia drynarioides strain JFW-HI SEQ_129782, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141020

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5076--5171	23	4.2	23	79	15	117	12	25	21	40	1.88
5076--5235	46	3.7	46	76	16	126	12	23	20	43	1.86
5136--5210	39	1.9	39	91	0	123	12	22	21	44	1.85
5175--5235	23	2.7	23	87	2	88	11	22	18	47	1.80
6801--6949	23	6.5	23	81	6	151	44	21	21	12	1.84
6801--6948	46	3.2	46	86	5	176	45	20	21	12	1.84
14158--14223	32	2.1	32	100	0	132	27	24	9	39	1.85
21534--21629	23	4.2	23	79	15	117	12	25	21	40	1.88
21534--21693	46	3.7	46	76	16	126	12	23	20	43	1.86
21594--21668	39	1.9	39	91	0	123	12	22	21	44	1.85
21633--21693	23	2.7	23	87	2	88	11	22	18	47	1.80
23259--23407	23	6.5	23	81	6	151	44	21	21	12	1.84
23259--23406	46	3.2	46	86	5	176	45	20	21	12	1.84
30616--30681	32	2.1	32	100	0	132	27	24	9	39	1.85
34022--34135	56	2.0	56	100	0	228	21	7	25	46	1.76
35609--35689	40	2.0	41	92	2	137	30	12	14	41	1.83
40155--40189	3	11.7	3	100	0	70	34	0	34	31	1.58
41299--41335	19	2.0	18	89	5	56	2	21	8	67	1.29
42985--43031	10	4.8	10	82	17	55	31	0	2	65	1.04
42988--43031	9	4.6	9	81	13	52	29	0	2	68	1.02
46325--46354	12	2.5	12	100	0	60	93	0	6	0	0.35
59890--60030	31	4.5	31	73	15	121	27	17	10	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59953--60030	32	2.5	31	82	2	93	25	17	12	43	1.85
59890--60081	91	2.1	91	83	4	235	26	17	11	43	1.84
60257--60336	31	2.5	32	78	9	92	43	7	18	30	1.78
64089--64139	15	3.3	15	83	2	57	33	29	7	29	1.85
65815--65979	59	2.8	59	76	9	149	55	13	4	26	1.56
75482--75529	15	3.2	14	80	11	51	62	0	2	35	1.07
84246--84305	21	2.8	20	72	18	50	55	3	3	38	1.33
87889--87933	20	2.2	21	77	18	51	2	26	0	71	0.98
88498--88531	17	1.9	18	88	5	52	44	0	14	41	1.45
91728--91772	11	3.9	11	77	11	54	57	4	0	37	1.19
93029--93071	18	2.3	19	84	4	52	62	2	2	32	1.20
93047--93125	37	2.1	37	82	13	92	65	2	1	30	1.13
93270--93312	9	4.6	9	80	11	50	65	2	0	32	1.06
93272--93310	20	2.0	20	90	10	62	61	2	0	35	1.10
93084--93627	188	2.9	187	88	4	768	50	15	7	26	1.70
96818--97043	76	3.0	76	96	1	411	35	15	10	38	1.81
97027--97092	14	4.9	14	83	7	91	13	6	28	51	1.65
97083--97299	20	11.2	20	74	8	146	15	1	31	51	1.54
97142--97191	14	3.7	14	72	20	52	12	0	38	50	1.40
97341--97397	21	2.8	20	86	5	78	21	5	26	47	1.71
97340--97404	27	2.4	26	82	5	67	21	4	27	46	1.71
97340--97410	20	3.5	20	81	7	54	21	4	28	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97426--97475	20	2.5	20	83	0	73	18	0	34	48	1.48
97488--97539	14	3.8	13	80	12	50	13	0	25	61	1.32
97605--97631	14	1.9	14	100	0	54	7	0	33	59	1.25
97759--97802	20	2.2	21	80	12	56	13	6	25	54	1.63
101787--101817	14	2.2	14	94	0	53	90	0	6	3	0.55
102769--102803	15	2.3	15	90	9	54	42	0	0	57	0.99
103781--103809	15	1.9	15	100	0	58	62	13	13	10	1.55
104608--104638	16	1.9	16	93	0	53	64	0	0	35	0.94
104608--104646	19	2.1	19	85	9	53	64	2	0	33	1.08
104628--104661	14	2.4	14	85	0	50	50	11	0	38	1.39
105253--105277	13	1.9	13	100	0	50	84	16	0	0	0.63
122605--122658	24	2.2	24	86	0	72	38	1	1	57	1.20
134791--134871	14	5.7	14	76	2	63	34	16	2	46	1.60
135648--135682	2	17.5	2	100	0	70	0	51	0	48	1.00
140956--140986	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1

The End!