Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014744.1 Kokia drynarioides strain JFW-HI SEQ_129783, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2786
ACGTcount: A:0.36, C:0.12, G:0.13, T:0.38

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:628 original size:5 final size:5

Alignment explanation


    Indices: 618--664  Score: 60
    Period size: 5  Copynumber: 9.4  Consensus size: 5

        608 ATGATGTGTA

                                         *                   *       
        618 AATAT AATAT AATA- AATAT AATTAA AATAT AATAT AATAT TATAT AA
          1 AATAT AATAT AATAT AATAT AA-TAT AATAT AATAT AATAT AATAT AA

        665 GCAAATAATG


Statistics
Matches: 36,  Mismatches: 4, Indels: 4
        0.82            0.09        0.09

Matches are distributed among these distances:
   4    4  0.11
   5   28  0.78
   6    4  0.11

ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38


Consensus pattern (5 bp):   
AATAT
Done.