Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014749.1 Kokia drynarioides strain JFW-HI SEQ_129788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1975
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33


Found at i:547 original size:29 final size:29

Alignment explanation


    Indices: 489--547  Score: 82
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        479 TCCATCTTAG

                  *                * *   
        489 CACGAATTCTCAATGAACAAGTTTTTCAC
          1 CACGAACTCTCAATGAACAAGTTCTCCAC

                      *                  
        518 CACGAACTCTGAATGAACAAGTTCTCCAC
          1 CACGAACTCTCAATGAACAAGTTCTCCAC

             
        547 C
          1 C

        548 TCTTCCACGA


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  29   26  1.00

ACGTcount: A:0.34, C:0.29, G:0.12, T:0.25


Consensus pattern (29 bp):   
CACGAACTCTCAATGAACAAGTTCTCCAC
Done.