genome.fa.s14750.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014750.1 Kokia drynarioides strain JFW-HI SEQ_129789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  167501

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2123--2202	27	3.0	25	85	10	90	21	21	27	30	1.98
3533--3589	21	2.5	24	75	8	57	40	26	3	29	1.73
3691--3742	26	2.0	27	96	3	97	36	21	11	30	1.89
4252--4585	51	6.5	51	92	1	571	32	22	13	32	1.92
6119--6175	11	5.4	11	74	16	50	38	1	1	57	1.19
6159--6207	20	2.7	18	77	22	57	44	0	4	51	1.20
7015--7058	22	2.0	23	81	4	54	27	22	25	25	2.00
17973--18009	10	3.8	10	85	7	58	21	2	21	54	1.58
17968--18041	9	8.2	9	79	11	71	25	5	16	52	1.64
19196--19409	43	5.0	43	81	4	243	24	14	17	42	1.87
19196--19409	86	2.5	86	83	0	275	24	14	17	42	1.87
28060--28122	33	1.9	33	90	0	99	11	9	20	58	1.60
31070--31117	21	2.3	21	92	3	80	25	16	10	47	1.78
44939--44967	14	2.1	14	100	0	58	34	31	13	20	1.92
54939--54969	16	1.9	16	93	0	53	25	38	0	35	1.56
55474--55504	8	3.9	8	95	0	53	32	0	25	41	1.56
56456--56638	98	1.9	97	91	1	303	26	19	27	26	1.99
66376--66542	48	3.5	48	95	0	280	23	9	13	53	1.69
66986--67141	80	2.0	78	89	2	240	35	21	15	28	1.93
73062--73193	48	2.7	48	92	2	210	22	9	14	53	1.70
73642--73794	80	1.9	80	90	0	243	34	20	14	30	1.93
84271--84433	81	2.0	81	92	2	274	26	23	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85375--85404	15	2.0	15	100	0	60	26	20	20	33	1.97
90867--91046	37	4.9	37	86	0	243	11	21	30	36	1.89
95731--95868	69	2.0	68	88	1	204	36	10	30	23	1.88
109850--110017	84	2.0	84	98	0	327	28	10	23	37	1.87
121554--121741	25	7.5	25	86	2	270	28	4	20	46	1.70
123437--123507	20	3.5	20	75	12	74	46	12	7	33	1.69
124552--124618	32	2.1	32	86	2	91	29	7	17	44	1.76
132435--132472	15	2.5	15	86	0	58	15	10	31	42	1.81
137491--137546	16	3.4	16	69	26	53	39	0	25	35	1.56
137487--137555	34	2.0	34	100	0	138	37	0	27	34	1.57
137811--138090	82	3.5	80	79	6	273	26	17	23	32	1.96
138263--138298	18	2.0	18	88	0	54	33	0	22	44	1.53
142960--143124	25	6.7	25	90	2	262	29	4	20	45	1.72
142968--143112	48	3.0	48	91	4	236	29	5	20	44	1.73
151074--151139	32	2.1	32	88	0	96	33	7	16	42	1.77
154295--154458	80	2.1	79	89	2	249	29	15	20	34	1.94
159825--159868	22	1.9	24	81	9	56	29	9	13	47	1.74
160106--160226	47	2.5	48	90	2	190	53	14	9	21	1.70
165720--165876	80	2.0	79	89	1	242	31	14	19	34	1.92
166321--166501	48	3.8	48	90	0	272	53	13	8	24	1.69

Tables:   1

The End!