genome.fa.s14754.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014754.1 Kokia drynarioides strain JFW-HI SEQ_129793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104367

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2238--2287	21	2.4	21	83	6	57	4	30	4	62	1.32
2494--2572	33	2.4	33	79	12	83	49	2	2	45	1.29
7789--7922	28	4.8	28	83	4	146	40	23	12	23	1.89
7789--7924	56	2.4	56	85	3	177	40	23	12	23	1.89
10104--10157	16	3.5	15	78	14	56	46	0	16	37	1.48
10115--10157	15	2.9	14	83	13	50	48	0	13	37	1.43
10866--10931	26	2.5	26	92	0	105	30	13	28	27	1.94
11428--11785	172	2.2	158	80	13	372	38	0	36	24	1.56
11902--11947	18	2.5	18	89	3	65	34	17	15	32	1.91
16971--17029	30	2.0	30	86	6	84	42	0	37	20	1.52
17177--17220	21	2.0	22	91	4	72	40	0	36	22	1.54
18380--18530	23	6.6	23	75	12	105	44	21	22	11	1.84
18380--18524	69	2.1	68	83	12	181	44	20	22	12	1.85
24457--24583	62	2.0	62	95	0	227	18	22	10	48	1.79
25659--25761	23	4.4	23	80	7	118	42	20	25	11	1.85
25633--25741	48	2.3	48	84	10	143	41	21	24	12	1.88
25662--25761	48	2.1	46	85	7	130	42	20	26	12	1.86
25633--25741	23	4.5	25	79	11	120	41	21	24	12	1.88
29253--30118	49	17.8	49	77	3	640	34	15	27	22	1.94
29257--30118	98	8.9	98	77	4	717	34	15	27	22	1.94
30131--30225	42	2.3	43	80	10	108	42	14	24	18	1.88
30975--31007	14	2.4	14	90	10	50	72	18	9	0	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31128--32621	4	378.8	4	81	6	1674	45	25	5	23	1.73
32917--32988	30	2.4	31	86	6	94	27	12	1	58	1.43
39027--39416	194	2.0	195	95	0	710	27	25	15	31	1.96
40494--40538	9	5.0	9	100	0	90	44	11	11	33	1.75
41531--41886	195	1.8	193	84	3	491	30	18	25	25	1.98
42672--42723	21	2.5	21	81	6	61	26	15	28	28	1.96
44744--44909	52	3.2	52	86	1	201	27	18	21	32	1.97
44744--44909	25	6.5	26	78	6	142	27	18	21	32	1.97
44834--44905	27	2.8	25	83	8	90	30	18	13	37	1.89
44794--44941	25	5.7	26	75	11	110	28	18	19	33	1.96
55999--56063	32	2.0	32	100	0	130	29	15	12	43	1.83
62269--62366	52	1.9	52	83	6	128	37	5	7	50	1.52
62520--62730	79	2.6	81	78	14	208	29	12	12	44	1.80
70761--70797	19	1.9	19	88	0	56	24	0	10	64	1.25
71073--71125	26	2.0	26	85	0	70	41	5	3	49	1.44
71865--71942	31	2.5	31	81	6	95	64	5	12	17	1.46
72921--72950	14	2.1	14	100	0	60	13	6	0	80	0.91
78600--78829	127	1.8	127	83	4	313	46	21	9	22	1.79
80061--80110	20	2.4	21	77	9	59	30	6	4	60	1.39
80691--80747	29	2.0	29	89	0	87	36	28	10	24	1.88
82361--82436	37	2.1	36	85	11	102	40	1	2	55	1.22
82361--82436	12	6.8	11	72	19	52	40	1	2	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84949--84985	12	3.3	12	78	21	53	27	8	24	40	1.83
93559--93592	3	11.3	3	100	0	68	0	32	0	67	0.91
95421--95501	30	2.7	31	79	7	96	44	20	12	22	1.85
96735--96778	22	2.1	20	87	8	61	75	0	9	15	1.05
101401--101436	14	2.5	15	90	4	56	5	5	0	88	0.61
101400--101436	15	2.5	15	91	8	58	5	5	0	89	0.60
101499--101559	13	4.8	12	73	13	50	40	8	16	34	1.78
101497--101559	26	2.4	26	89	0	99	39	9	15	34	1.80
104338--104367	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!