genome.fa.s14766.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014766.1 Kokia drynarioides strain JFW-HI SEQ_129805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206991

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413--584	30	5.7	31	85	5	169	33	2	24	38	1.70
442--584	60	2.4	59	84	2	187	34	3	23	37	1.72
413--584	90	1.9	91	82	10	219	33	2	24	38	1.70
2621--2673	26	2.0	26	100	0	106	32	11	18	37	1.87
2967--3049	9	8.7	10	90	9	106	61	1	1	36	1.12
2971--3033	3	20.7	3	96	3	117	65	0	0	34	0.93
4030--4133	30	3.5	30	80	13	135	37	28	4	28	1.78
4026--4149	58	2.1	59	86	4	180	36	29	4	29	1.76
4030--4152	30	4.2	30	78	9	128	37	28	4	30	1.76
4215--4276	28	2.2	28	85	2	79	35	29	9	25	1.88
7761--7812	25	2.1	25	85	0	68	36	0	0	63	0.95
7766--7804	18	2.2	18	86	9	53	35	0	0	64	0.94
22669--22699	16	1.9	16	93	0	53	48	0	0	51	1.00
22733--22772	20	2.0	20	90	0	62	30	0	2	67	1.04
23212--23245	18	1.9	18	88	5	52	20	8	8	61	1.52
30872--30909	19	2.0	20	84	5	51	31	5	7	55	1.51
44000--44040	21	2.0	21	90	0	64	39	34	9	17	1.82
48674--48753	23	3.4	23	76	8	81	46	15	11	27	1.79
50115--50141	6	4.5	6	100	0	54	18	51	14	14	1.76
64791--64817	3	9.0	3	100	0	54	33	33	33	0	1.58
66308--66338	2	15.5	2	93	0	53	0	3	51	45	1.17
73447--73491	22	2.1	21	83	4	54	31	4	8	55	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76386--76431	24	1.9	23	86	8	65	54	6	4	34	1.46
76497--76529	13	2.6	13	85	4	50	57	12	0	30	1.35
81371--81402	14	2.4	13	90	10	55	71	0	3	25	1.00
82821--82882	28	2.2	29	80	13	67	35	1	25	37	1.66
82846--82957	58	1.9	57	82	7	136	35	4	26	33	1.77
82965--83313	29	11.8	29	80	5	317	35	3	26	35	1.72
82963--83304	119	2.9	117	84	6	440	35	3	26	35	1.73
83725--83756	16	2.0	16	93	0	55	28	18	21	31	1.97
85075--85108	17	1.9	18	88	5	52	11	2	20	64	1.39
85178--85214	14	2.7	14	95	4	67	64	0	2	32	1.07
85838--85883	24	1.9	23	86	8	65	54	6	4	34	1.46
86337--86370	7	4.9	7	92	0	50	47	0	52	0	1.00
91685--91731	19	2.6	18	83	10	51	0	27	0	72	0.85
92287--92337	17	3.0	17	78	13	52	47	0	5	47	1.26
94424--94609	29	6.5	28	78	9	132	37	24	3	34	1.72
94210--94640	30	14.8	29	77	7	331	36	24	4	34	1.76
95136--95182	2	23.5	2	91	0	76	46	0	0	53	1.00
97330--97362	17	2.0	16	94	5	57	33	0	0	66	0.92
98272--98361	47	1.9	47	84	4	119	35	6	6	51	1.55
100711--100923	108	2.0	104	79	13	227	43	17	8	29	1.80
106567--106644	17	4.5	17	78	10	86	39	3	2	53	1.33
106567--106644	35	2.2	35	82	8	88	39	3	2	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107323--107349	3	9.0	3	100	0	54	66	0	0	33	0.92
107410--107435	3	8.7	3	100	0	52	65	0	0	34	0.93
108404--108604	59	3.4	58	80	13	196	33	27	5	33	1.80
108442--108604	59	2.7	59	82	10	197	34	28	4	31	1.78
108406--108604	29	6.7	30	81	7	194	34	27	5	33	1.79
109772--109882	29	3.8	29	70	20	70	34	9	27	29	1.87
109744--109941	59	3.4	59	83	4	177	32	7	29	30	1.85
109801--109893	29	3.2	29	70	18	84	33	7	30	29	1.85
109791--109941	59	2.5	59	88	3	205	32	8	26	32	1.87
109840--110065	29	7.6	29	70	18	110	33	4	26	35	1.78
109947--110198	29	8.6	29	72	11	158	33	3	26	36	1.73
109990--110199	59	3.6	58	81	10	232	34	1	26	37	1.68
109940--110209	30	9.1	29	68	17	101	33	2	25	38	1.71
109999--110223	59	3.8	58	79	6	222	32	1	27	38	1.67
119075--119102	5	5.6	5	100	0	56	60	0	0	39	0.97
122280--122326	17	2.8	16	81	12	58	72	2	0	25	0.96
127794--127876	30	2.5	33	77	15	91	36	1	0	62	1.03
127825--127873	13	3.5	13	75	20	53	36	2	0	61	1.08
127808--127872	30	2.1	32	88	5	98	40	1	0	58	1.07
127817--127876	15	4.0	15	73	4	59	36	1	0	61	1.06
132357--132575	115	1.9	117	83	3	291	20	13	17	48	1.80
135914--136014	47	2.1	47	94	0	175	33	8	14	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140003--140063	32	1.9	32	93	3	106	49	13	6	31	1.67
149430--149464	13	2.7	13	90	0	61	37	22	14	25	1.92
151454--151502	23	2.1	23	100	0	98	61	8	8	22	1.51
162099--162127	6	4.8	6	100	0	58	34	31	17	17	1.93
181962--181991	14	2.1	14	93	0	51	40	0	0	60	0.97
182002--182034	7	4.7	7	100	0	66	57	0	12	30	1.35
197369--197457	12	8.1	11	68	20	53	71	20	2	5	1.16
197368--197459	31	2.8	33	80	8	109	70	21	2	5	1.18
197369--197459	22	4.2	21	80	8	103	71	20	2	5	1.17
197369--197485	43	2.7	42	77	16	105	70	20	3	5	1.21
203288--203368	6	14.2	6	69	19	57	44	0	2	53	1.14
203324--203375	10	4.8	10	80	17	59	44	0	1	53	1.11
203309--203375	27	2.6	27	84	9	79	41	0	2	55	1.15
203288--203375	17	5.2	16	80	5	86	44	0	2	53	1.13
203992--204024	15	2.2	15	94	0	57	57	3	6	33	1.38
204003--204043	12	3.4	12	86	6	57	56	0	2	41	1.13
205144--205775	29	21.7	29	67	14	277	33	30	5	31	1.80
205174--205452	30	9.4	30	71	13	121	33	29	5	32	1.79
205152--205797	59	11.1	59	78	8	533	33	29	5	31	1.80
205851--205910	28	2.1	29	84	9	79	35	28	10	26	1.89

Tables:   1

The End!