genome.fa.s14770.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014770.1 Kokia drynarioides strain JFW-HI SEQ_129811, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  203025

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8451--8527	22	3.5	22	89	1	91	35	7	14	42	1.74
13884--13925	22	2.0	22	86	13	61	57	4	26	11	1.54
24222--24333	55	2.0	55	100	0	224	39	22	3	34	1.71
27242--27336	48	2.0	48	97	0	181	23	23	18	34	1.96
35159--35187	3	9.7	3	100	0	58	0	31	0	68	0.89
35884--35947	29	2.2	29	85	0	83	56	10	7	25	1.60
38196--38224	7	4.1	7	100	0	58	27	0	17	55	1.42
41647--41688	12	3.5	12	96	0	75	42	14	33	9	1.78
49469--49898	30	14.7	29	74	12	262	36	3	24	35	1.73
49469--49919	87	5.1	90	73	13	291	36	3	24	35	1.74
49469--49927	59	7.8	58	75	9	301	36	3	24	35	1.73
55048--55195	23	6.4	23	81	3	109	47	22	16	13	1.82
55082--55196	23	5.0	23	86	4	142	43	23	19	13	1.87
61821--61978	67	2.4	66	90	6	252	50	3	0	44	1.24
62602--63037	30	14.9	28	75	10	277	36	3	23	36	1.73
62604--63037	59	7.4	59	76	10	322	36	3	23	36	1.73
62604--63029	87	4.8	90	74	12	282	36	3	24	35	1.74
68158--68305	23	6.4	23	81	3	109	47	22	16	13	1.82
68192--68306	23	5.0	23	86	4	142	43	23	19	13	1.87
74925--75082	67	2.4	66	90	6	252	50	3	0	44	1.24
75626--76138	79	6.5	79	81	4	550	25	18	25	30	1.98
75638--76138	40	12.6	40	76	7	389	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76189--76312	50	2.5	50	78	2	142	20	24	18	37	1.94
81063--81139	31	2.5	31	87	4	104	41	11	15	31	1.83
83588--83746	63	2.5	62	80	10	189	50	3	1	44	1.28
86095--86139	6	7.5	6	89	0	63	22	31	0	46	1.52
90284--90343	28	2.1	28	84	6	77	36	1	28	33	1.67
90313--90761	30	15.3	30	78	8	394	35	3	26	34	1.73
90313--90761	59	7.7	59	80	8	415	35	3	26	34	1.73
90343--90569	29	7.8	29	77	9	104	35	3	26	33	1.74
90313--90769	87	5.2	87	78	8	385	35	3	26	34	1.72
90306--90761	117	3.9	111	79	10	400	35	3	26	34	1.72
91516--91550	8	4.4	8	92	0	61	65	0	0	34	0.93
93744--93800	29	1.9	30	82	10	73	29	1	8	59	1.38
100734--100798	17	3.4	18	78	16	69	52	1	1	44	1.19
100763--100806	17	2.6	17	92	0	70	56	2	0	40	1.11
100764--100832	17	4.3	16	72	10	61	55	1	1	42	1.18
100743--100832	47	1.9	46	84	10	121	54	1	1	43	1.14
100849--100878	15	2.0	15	93	0	51	6	30	0	63	1.20
101647--101740	20	4.9	20	70	23	85	50	1	0	48	1.07
101645--101731	27	3.1	27	85	5	120	49	0	0	50	1.00
112495--112553	30	2.0	30	83	3	75	15	38	5	40	1.69
113680--113801	55	2.2	55	92	0	199	38	10	17	33	1.84
116248--116296	19	2.6	19	83	0	62	24	42	8	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117252--117313	29	2.1	30	82	11	76	27	3	16	53	1.58
119769--119855	41	2.1	41	100	0	174	32	14	22	29	1.94
127987--128034	19	2.6	19	81	15	64	10	12	4	72	1.24
128707--128734	10	2.8	10	100	0	56	53	17	10	17	1.72
128901--128952	25	2.1	25	85	7	70	55	13	9	21	1.66
129827--129875	13	3.8	13	76	10	55	30	22	0	46	1.52
133290--133324	17	2.1	17	89	10	54	77	5	0	17	0.96
143108--143140	17	1.9	17	93	0	57	9	9	3	78	1.05
148872--148995	48	2.6	48	84	2	151	35	13	24	26	1.93
148872--149014	48	3.0	48	79	2	126	36	13	24	25	1.93
148793--149120	172	1.9	173	89	1	516	36	17	22	23	1.94
149095--149194	37	2.7	37	93	0	164	35	16	22	27	1.94
150084--150112	14	2.0	15	93	6	51	75	0	10	13	1.04
154439--154490	23	2.3	23	86	6	70	44	15	26	13	1.84
154545--154579	17	2.1	17	89	5	54	20	8	0	71	1.11
155892--155937	18	2.6	17	83	16	58	34	13	8	43	1.74
158131--158312	96	1.9	97	83	1	240	39	13	15	31	1.86
158528--158876	29	12.0	30	69	16	184	37	4	27	30	1.76
158562--158755	30	6.7	28	72	15	94	38	4	26	30	1.77
158528--158859	58	5.7	60	77	10	323	37	4	27	29	1.77
160767--160860	17	5.4	17	83	5	125	53	1	1	44	1.14
160767--160860	6	16.2	6	74	18	83	53	1	1	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160770--160858	29	3.3	28	70	22	82	52	1	1	44	1.15
160767--160860	35	2.7	34	83	9	118	53	1	1	44	1.14
161334--162060	99	7.4	99	82	4	885	14	24	20	40	1.90
161345--162064	296	2.4	295	90	1	1109	14	24	20	40	1.90
161314--162060	197	3.8	196	83	3	910	14	24	20	40	1.89
172509--172584	6	13.0	6	76	20	81	52	0	1	46	1.08
172509--172602	17	5.4	17	83	8	118	54	1	1	43	1.14
172512--172604	12	8.1	11	75	11	53	54	1	1	43	1.14
174352--174438	39	2.3	37	78	7	93	44	1	3	50	1.26
174431--174483	23	2.2	24	80	12	65	64	3	0	32	1.12
175033--175083	25	2.1	24	82	7	59	11	9	1	76	1.10
175180--175213	17	2.1	16	94	5	59	79	0	17	2	0.86
180089--180115	10	2.7	10	100	0	54	0	44	7	48	1.31
180911--180957	15	3.1	15	87	3	67	8	8	0	82	0.83
181529--181593	13	4.9	13	75	7	51	44	3	10	41	1.55
182456--182496	19	2.2	19	100	0	82	31	0	14	53	1.41
187355--187474	60	2.0	60	95	0	213	24	25	14	36	1.93
188894--188952	29	2.0	29	100	0	118	44	18	6	30	1.76
190780--190816	17	2.1	18	90	5	58	62	2	2	32	1.23
196070--196144	23	3.2	23	86	7	80	13	20	22	44	1.86
196082--196182	23	4.3	23	83	5	105	12	19	22	44	1.85
201173--201342	59	2.8	59	82	11	204	44	1	2	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201323--201379	29	2.1	26	81	12	62	50	8	1	38	1.44

Tables:   1

The End!