Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014771.1 Kokia drynarioides strain JFW-HI SEQ_129812, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14192
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.35

Warning! 510 characters in sequence are not A, C, G, or T


Found at i:13738 original size:50 final size:51

Alignment explanation


    Indices: 13667--13767  Score: 170
    Period size: 50  Copynumber: 2.0  Consensus size: 51

      13657 CGTAAAAAAA

                                              *                
      13667 TGACTGAAATGTAAACTAAGTGACTATTTGTTTCTCCTTATCAAAATTGAG
          1 TGACTGAAATGTAAACTAAGTGACTATTTGTTTCCCCTTATCAAAATTGAG

                                                                
      13718 TGACTGAAA-GTAAA-TCAAGTGACTATTTGTTTCCCCTTATCAAAATTGAG
          1 TGACTGAAATGTAAACT-AAGTGACTATTTGTTTCCCCTTATCAAAATTGAG

      13768 NNNNNNNNNN


Statistics
Matches: 48,  Mismatches: 1, Indels: 3
        0.92            0.02        0.06

Matches are distributed among these distances:
  49    1  0.02
  50   38  0.79
  51    9  0.19

ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36


Consensus pattern (51 bp):   
TGACTGAAATGTAAACTAAGTGACTATTTGTTTCCCCTTATCAAAATTGAG
Done.