genome.fa.s14776.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014776.1 Kokia drynarioides strain JFW-HI SEQ_129818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  247535

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5732--5768	19	1.9	19	88	0	56	51	0	0	48	1.00
5714--5770	15	3.5	15	69	17	51	47	0	1	50	1.11
5921--5953	13	2.8	12	86	13	50	45	0	0	54	0.99
5949--5999	20	2.7	19	78	6	50	62	0	0	37	0.95
12408--12448	21	2.0	21	95	0	73	31	4	19	43	1.72
22908--22949	11	3.8	11	78	9	50	57	2	0	40	1.12
25625--25702	27	2.8	28	70	12	72	47	1	5	46	1.33
25732--25784	23	2.3	23	80	6	63	43	3	1	50	1.30
29240--29308	26	2.7	25	74	19	70	47	0	0	52	1.00
29263--29326	16	3.5	19	70	20	55	48	1	0	50	1.10
29267--29310	16	2.7	16	89	3	61	52	0	0	47	1.00
38232--38258	9	3.0	9	100	0	54	0	0	22	77	0.76
39865--40039	84	2.1	84	100	0	350	30	12	23	33	1.92
44808--44849	12	3.4	12	78	15	50	9	11	2	76	1.12
48261--48306	14	3.4	14	76	11	60	41	23	10	23	1.86
48259--48318	26	2.3	26	100	0	120	40	21	11	26	1.88
48275--48318	12	3.5	12	76	11	52	38	20	13	27	1.90
56988--57020	16	2.0	17	88	5	50	60	0	6	33	1.21
58180--58219	21	1.9	21	89	0	62	25	10	12	52	1.70
58973--59050	39	2.0	39	100	0	156	35	7	12	43	1.72
59238--59297	29	2.1	29	87	0	84	30	15	10	45	1.78
63652--63690	18	2.1	19	90	4	62	38	2	2	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64567--64645	40	2.0	40	80	14	92	34	0	6	59	1.23
66792--66833	21	2.0	21	85	4	57	19	7	7	66	1.39
71066--71117	21	2.6	19	77	22	61	3	21	0	75	0.97
71077--71159	36	2.4	35	72	18	84	8	19	0	72	1.10
71078--71123	23	2.0	24	91	4	76	8	19	0	71	1.11
72145--72189	11	4.4	10	81	13	56	15	8	0	75	1.03
72152--72191	11	3.6	11	93	0	62	12	7	0	80	0.91
77051--77101	20	2.6	21	79	17	56	70	1	3	23	1.14
88587--88690	52	2.0	52	100	0	208	25	15	23	36	1.93
94113--94187	30	2.5	30	79	12	82	44	0	1	54	1.08
95259--95295	16	2.3	16	86	13	58	59	0	0	40	0.97
95302--95385	15	5.5	15	71	18	57	51	2	1	45	1.22
96658--96700	21	2.0	21	86	8	61	25	0	9	65	1.22
101223--101264	2	21.0	2	100	0	84	50	0	0	50	1.00
115624--115670	4	11.8	4	90	0	76	46	0	2	51	1.13
115624--115670	6	7.8	6	95	0	76	46	0	2	51	1.13
118900--119026	61	2.2	58	84	8	161	23	8	17	50	1.73
118986--119057	34	2.1	34	97	0	135	22	5	19	52	1.66
119000--119051	17	3.1	17	72	10	61	25	7	15	51	1.69
120487--120583	39	2.4	40	78	14	101	35	4	22	38	1.74
122708--122753	23	2.0	24	87	12	69	71	2	0	26	0.97
122708--122748	12	3.4	12	80	19	50	73	2	0	24	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127636--127671	18	2.0	18	89	10	56	38	8	8	44	1.65
129581--129808	110	2.1	111	98	0	440	43	11	21	23	1.84
141674--141700	5	5.4	5	100	0	54	81	18	0	0	0.69
143261--143305	19	2.4	19	88	7	65	37	0	8	53	1.32
143431--143488	23	2.5	23	100	0	116	27	18	12	41	1.86
150918--151437	268	1.9	268	84	5	685	32	11	19	36	1.88
153353--153446	30	3.2	30	82	7	102	35	24	2	38	1.68
153442--153590	29	5.1	29	78	5	131	40	22	6	31	1.78
153442--153591	57	2.6	59	79	4	160	40	22	6	31	1.78
164648--164793	72	2.0	72	100	0	292	38	14	21	25	1.91
165905--166430	208	2.5	209	87	0	750	36	16	23	23	1.94
166368--166440	37	2.0	37	91	0	119	34	19	23	23	1.97
168672--168759	29	3.0	29	80	3	106	30	31	4	32	1.78
168718--168847	30	4.4	29	78	9	113	35	28	3	32	1.75
178751--178786	18	2.1	17	89	5	54	0	11	2	86	0.68
183084--183114	2	15.5	2	100	0	62	51	48	0	0	1.00
184513--184580	34	2.1	33	83	5	84	35	10	4	50	1.57
186222--186258	4	9.2	4	93	0	56	0	18	0	81	0.70
187034--187118	32	2.7	32	85	3	118	45	15	1	37	1.54
187254--187290	15	2.5	15	90	0	56	64	2	8	24	1.34
191473--191503	2	16.0	2	93	6	55	48	0	0	51	1.00
199517--199651	60	2.3	59	84	5	166	25	12	8	53	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210829--210855	2	13.5	2	100	0	54	48	0	0	51	1.00
217089--217128	2	20.0	2	89	0	62	47	2	2	47	1.29
217496--217543	23	2.0	24	84	8	62	29	2	6	62	1.31
219977--220011	16	2.1	18	89	10	56	42	2	0	54	1.15
220354--220382	13	2.1	14	93	6	51	58	13	0	27	1.36
229530--229599	12	5.9	12	76	3	61	70	18	4	7	1.28
229604--229667	22	2.8	23	78	2	58	59	18	7	14	1.58
230476--230525	15	3.4	15	68	15	50	54	8	0	38	1.30
230866--230924	32	1.9	32	83	10	79	40	6	3	49	1.46
230963--231003	14	2.8	15	79	13	50	46	0	2	51	1.14
230963--231000	16	2.3	17	82	17	53	42	0	2	55	1.14
240304--240372	24	2.9	24	87	8	104	27	23	21	27	1.99

Tables:   1

The End!