genome.fa.s14778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014778.1 Kokia drynarioides strain JFW-HI SEQ_129820, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40539

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5128--5337	30	7.0	30	85	2	260	39	1	22	35	1.66
5128--5337	91	2.3	90	88	0	312	39	1	22	35	1.66
8778--8807	11	2.6	12	94	5	53	40	0	0	60	0.97
9415--9463	22	2.3	22	82	3	55	32	8	0	59	1.27
10603--10872	30	8.9	29	80	9	220	38	22	2	37	1.67
10637--10961	60	5.5	57	77	11	237	36	23	2	37	1.68
10625--10845	90	2.4	91	82	5	268	38	23	2	36	1.67
10703--10980	30	9.4	30	76	12	140	35	23	2	38	1.70
18784--18816	16	1.9	18	88	11	52	30	24	15	30	1.95
18827--18855	10	2.7	11	94	5	51	34	0	13	51	1.42
18848--18912	20	3.6	18	82	12	78	35	3	3	58	1.29
18880--18934	16	3.4	16	82	2	65	40	1	7	50	1.40
19676--19739	3	21.3	3	90	6	103	65	0	1	32	1.02
20893--21047	60	2.6	59	80	10	156	28	23	3	44	1.71
21004--21197	57	3.4	58	78	11	179	28	25	7	38	1.84
21057--21197	59	2.5	57	81	6	178	26	26	8	38	1.85
21004--21197	28	6.8	28	74	8	126	28	25	7	38	1.84
21146--21207	28	2.2	28	85	0	88	29	29	9	32	1.89
22670--22770	50	2.0	50	98	0	193	39	15	18	25	1.91
25258--25379	6	19.3	6	68	18	54	70	0	3	26	1.02
25288--25382	5	18.6	5	75	16	72	71	0	4	24	1.03
25290--25330	17	2.3	18	83	4	57	78	0	2	19	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25257--25382	19	6.9	19	71	23	62	69	0	3	26	1.05
25288--25387	38	2.8	36	75	14	91	70	1	5	24	1.14
34671--35015	161	2.2	160	86	2	485	35	18	22	23	1.96
34990--35353	173	2.1	173	88	1	541	34	17	23	23	1.96
34831--35570	383	1.9	383	85	1	1025	35	17	23	23	1.96
35171--35570	210	1.9	210	86	2	570	36	17	23	23	1.95
36847--37380	120	4.4	120	83	2	599	37	2	24	35	1.70
36847--37380	30	17.8	30	80	1	527	37	2	24	35	1.70
38403--38449	24	1.9	25	82	4	60	19	4	29	46	1.68
38917--38944	13	2.2	13	100	0	56	10	14	21	53	1.70

Tables:   1

The End!