genome.fa.s14779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014779.1 Kokia drynarioides strain JFW-HI SEQ_129821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  275255

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3719--3854	72	1.9	72	87	0	200	25	16	25	33	1.96
4609--4658	23	2.2	23	89	7	75	24	12	20	44	1.85
4994--5064	31	2.2	32	80	9	83	43	5	7	43	1.55
6897--6984	28	3.1	28	100	0	176	10	21	13	54	1.68
13055--13126	36	2.0	36	86	0	99	19	25	13	41	1.88
13557--13599	21	2.0	22	90	4	70	34	18	2	44	1.63
15769--15836	24	2.7	24	80	19	68	63	2	2	30	1.24
16744--16800	4	14.2	4	81	0	51	43	5	7	43	1.54
16771--16800	14	2.1	14	93	0	51	40	0	10	50	1.36
17254--17345	40	2.4	39	87	5	134	32	23	18	25	1.97
23529--23555	14	1.9	14	100	0	54	40	14	14	29	1.86
27787--27827	14	2.9	14	92	0	73	31	0	17	51	1.46
27779--27844	12	5.2	12	77	13	60	34	3	15	46	1.61
34234--34273	21	1.9	21	89	0	62	32	27	12	27	1.93
34235--34281	21	2.2	21	84	0	58	40	25	12	21	1.89
36333--36513	90	2.0	90	94	0	317	25	19	16	39	1.91
46481--46508	2	14.0	2	100	0	56	0	0	50	50	1.00
46912--46978	30	2.2	30	79	10	75	65	0	26	7	1.19
47199--47287	34	2.6	36	80	12	105	40	1	3	55	1.24
50609--50642	18	2.0	16	88	11	50	20	17	23	38	1.93
60663--60719	29	1.9	30	96	3	107	29	21	14	35	1.92
63791--63837	10	4.6	11	75	20	57	55	6	0	38	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65758--65996	56	4.3	55	86	2	302	26	17	22	33	1.96
69045--69206	23	7.0	22	80	10	123	41	23	24	10	1.86
76061--76086	5	5.2	5	100	0	52	19	0	42	38	1.51
76387--76511	23	5.5	22	82	8	110	40	24	23	12	1.88
80062--80137	38	2.0	38	97	0	143	38	11	21	28	1.89
83685--83742	21	2.8	21	97	0	107	36	22	18	22	1.95
86971--87083	60	1.9	60	94	0	199	31	11	11	45	1.76
87105--87129	8	3.1	8	100	0	50	40	24	0	36	1.55
92992--93085	47	2.0	47	100	0	188	38	17	12	31	1.87
98060--98124	30	2.2	30	85	0	94	55	24	10	9	1.63
98455--98487	12	2.6	13	90	4	50	51	18	15	15	1.77
101933--101991	28	2.1	28	80	0	64	25	16	20	37	1.93
101960--102124	55	3.0	55	85	5	226	26	17	21	33	1.96
101998--102088	27	3.3	26	72	10	83	29	16	23	30	1.96
106793--106849	30	1.9	30	82	7	71	45	19	1	33	1.61
109426--109484	18	3.3	18	82	0	73	40	22	8	28	1.83
112737--112791	22	2.5	22	88	5	76	18	9	9	63	1.49
112751--112783	14	2.3	15	89	5	50	18	9	12	60	1.57
112894--112923	15	2.0	15	93	0	51	43	0	0	56	0.99
113975--114028	27	2.0	27	100	0	108	33	14	18	33	1.92
117495--117532	19	2.0	19	100	0	76	36	21	5	36	1.76
117646--117722	37	2.1	37	83	7	95	61	0	5	33	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154374--154437	27	2.3	27	83	2	83	26	3	17	53	1.59
154657--154701	16	2.8	16	86	0	72	44	4	22	28	1.72
154692--154785	44	2.1	45	84	7	120	30	4	26	38	1.76
159386--159541	30	5.3	29	67	15	86	33	5	28	33	1.79
159398--159840	29	15.2	29	73	13	263	36	4	25	33	1.75
159397--159725	59	5.6	58	83	6	312	36	3	25	34	1.74
159384--159831	59	7.7	58	80	7	287	37	4	25	32	1.76
160978--161037	2	30.0	2	100	0	120	50	0	0	50	1.00
161742--161835	6	16.3	6	72	8	79	57	4	1	37	1.25
161742--161836	17	5.5	17	87	2	127	57	4	1	36	1.25
161742--161838	35	2.8	35	85	1	142	57	4	1	37	1.25
165891--165948	30	1.9	30	82	0	71	48	6	15	29	1.71
178444--178477	2	17.5	2	87	6	52	50	0	0	50	1.00
178571--178663	48	1.9	48	88	0	141	39	6	4	49	1.48
198202--198231	3	10.0	3	100	0	60	33	0	0	66	0.92
202866--202926	10	6.0	9	74	23	50	70	1	8	19	1.21
203571--203642	18	3.5	20	72	18	60	34	5	0	59	1.21
203486--203747	139	1.9	138	87	5	386	43	6	3	47	1.44
205446--205472	2	13.5	2	100	0	54	51	0	0	48	1.00
217233--217280	9	5.2	9	77	22	55	52	0	0	47	1.00
217231--217271	19	2.0	21	90	9	68	48	0	0	51	1.00
217234--217313	28	2.7	29	83	14	110	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217234--217313	31	2.7	32	88	9	116	48	0	1	50	1.08
218804--218847	21	2.2	20	88	8	63	72	2	0	25	0.96
219293--219341	20	2.5	19	80	9	55	61	8	2	28	1.36
219574--219621	20	2.3	20	89	3	69	37	2	4	56	1.30
219960--220064	52	2.0	52	100	0	210	45	13	11	29	1.78
223724--223769	22	2.1	22	95	0	83	52	13	10	23	1.71
242340--242570	113	2.0	113	95	0	417	34	22	12	30	1.91
250717--250758	20	2.2	20	86	4	59	64	0	7	28	1.20
260395--260605	90	2.4	86	80	10	230	45	13	4	37	1.63
260480--260645	84	1.9	88	80	9	200	45	15	5	33	1.68
260749--260803	19	2.9	19	78	5	58	69	1	0	29	0.99
270215--270301	40	2.2	40	87	0	120	20	24	9	45	1.80
270275--270342	15	4.7	15	72	20	63	26	25	7	41	1.81
270303--270417	55	2.1	54	85	6	151	31	20	6	42	1.76
270288--270385	14	7.2	13	67	22	51	30	22	5	41	1.75
270275--270414	28	5.0	28	84	5	167	30	21	6	42	1.78
270923--270961	21	1.9	21	89	5	62	46	23	0	30	1.53
274634--274678	6	7.5	6	89	0	63	46	0	31	22	1.52
275050--275137	41	2.1	41	93	4	151	56	6	12	23	1.60

Tables:   1

The End!